cluster # 2037

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Anopheles gambiae
cluster # 2037 cluster # 2037 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2037#0 length = 686 sequences # 1

consensus_2037#1 length = 448 sequences # 1

consensusID : consensus_2037#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [CCGCATCTACGGCACACAAATCTTTCCCCATTGCGGCAAAAGTACCTTTATTGTTTAACCGTAAAAGATGGGTAGAAAACGACATGCTGGCGCATCGGAGGAAACGGAGGGAGAGTACGATTTGCCAGCGAAACACATGAACACCAGCCACATCCGAGCGAACGAACGGCGGCTGATCATTGTGCTCGAAGGGGCTCAGCTTGAAACGGTCAAGGTGGGCCAAGTGTTTGAGCTGCTAAACTGTGACGATCACATCAACATACTGAGGAGGAACAAGCGCGACCCGGGAAGCTGCCGGCCCGACATAACGCACCAGTCGCTGTTGATGCTGATGGACTCGCCGCTAAACCGGGCCGGACTGTTGCAAGTGTTCGTGAAGACGGAAAAGAACGTTCTGATCGAAATAGATCCGCAAACGAGAATTCCGCGCACCTTCAAACGGTTTGCCGGTTTGATGGTGCAACTGCTGCACAAATTTTCCGTCAAGGCAGCCGATTCGGATAAGAAGCTGATGAGAATTATAAAAAATCCAATCAGCAACCATCTGCCTGTCGGGTGCAGAAAGATAGCGATGTCTTTCAGCGCCAGCGAGGTGAAGAACGCGAAGGAGCTTGGTGCCGGCGGCCAACGAACCGTTGACGCTGGTCGTTGGCGCGTTTGCGCACGGCAATCTGAACCTAGACTAT]

[+] EMBL BM601659             [CCGCATCTACGGCACACAAATCTTTCCCCATTGCGGCAAAAGTACCTTTATTGTTTAACCGTAAAAGATGGGTAGAAAACGACATGCTGGCGCATCGGAGGAAACGGAGGGAGAGTACGATTTGCCAGCGAAACACATGAACACCAGCCACATCCGAGCGAACGAACGGCGGCTGATCATTGTGCTCGAAGGGGCTCAGCTTGAAACGGTCAAGGTGGGCCAAGTGTTTGAGCTGCTAAACTGTGACGATCACATCAACATACTGAGGAGGAACAAGCGCGACCCGGGAAGCTGCCGGCCCGACATAACGCACCAGTCGCTGTTGATGCTGATGGACTCGCCGCTAAACCGGGCCGGACTGTTGCAAGTGTTCGTGAAGACGGAAAAGAACGTTCTGATCGAAATAGATCCGCAAACGAGAATTCCGCGCACCTTCAAACGGTTTGCCGGTTTGATGGTGCAACTGCTGCACAAATTTTCCGTCAAGGCAGCCGATTCGGATAAGAAGCTGATGAGAATTATAAAAAATCCAATCAGCAACCATCTGCCTGTCGGGTGCAGAAAGATAGCGATGTCTTTCAGCGCCAGCGAGGTGAAGAACGCGAAGGAGCTTGGTGCCGGCGGCCAACGAACCGTTGACGCTGGTCGTTGGCGCGTTTGCGCACGGCAATCTGAACCTAGACTAT]




>consensus_2037#0
CCGCATCTACGGCACACAAATCTTTCCCCATTGCGGCAAAAGTACCTTTATTGTTTAACC
GTAAAAGATGGGTAGAAAACGACATGCTGGCGCATCGGAGGAAACGGAGGGAGAGTACGA
TTTGCCAGCGAAACACATGAACACCAGCCACATCCGAGCGAACGAACGGCGGCTGATCAT
TGTGCTCGAAGGGGCTCAGCTTGAAACGGTCAAGGTGGGCCAAGTGTTTGAGCTGCTAAA
CTGTGACGATCACATCAACATACTGAGGAGGAACAAGCGCGACCCGGGAAGCTGCCGGCC
CGACATAACGCACCAGTCGCTGTTGATGCTGATGGACTCGCCGCTAAACCGGGCCGGACT
GTTGCAAGTGTTCGTGAAGACGGAAAAGAACGTTCTGATCGAAATAGATCCGCAAACGAG
AATTCCGCGCACCTTCAAACGGTTTGCCGGTTTGATGGTGCAACTGCTGCACAAATTTTC
CGTCAAGGCAGCCGATTCGGATAAGAAGCTGATGAGAATTATAAAAAATCCAATCAGCAA
CCATCTGCCTGTCGGGTGCAGAAAGATAGCGATGTCTTTCAGCGCCAGCGAGGTGAAGAA
CGCGAAGGAGCTTGGTGCCGGCGGCCAACGAACCGTTGACGCTGGTCGTTGGCGCGTTTG
CGCACGGCAATCTGAACCTAGACTAT

consensusID : consensus_2037#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [AGCTCAGGCAAGAATCGCCACGAGGTTAAATCTTTCCCCATTGCGGCAAAGTACCCTTTATTGTTTAACCGTAAAAGATGGGTAGAAAACGACATGCTGGCGCATCGGAGGAAACGGAGGGAGACGTACGATTTGCCAGCGAAACACATGNAACACCAGCCACATCCGAGCGAACGAACGGCGGCTGATCATTGTGCTCGAACGGGGCTCANGCTTGAAACGGTCAAGGTGGGCCAAGTGTTTGAGCTGCTAAACTGTGACGATCACATCAACATACTGAGGAGGAACAAGCGCGACCCGGGAAGCTGCCGGACCGACATAACGCACCAGTCGCTGTTGATGCTGATGGACTCGCCGCTAAACCGGGCCGGACTGTTGCAAGTGTTCGTGAACGACGGAAACAGGAACGTNCTGATCGAAATAGATCCGGAAGANGAGAATTCCGCGC]

[+] EMBL BX466511             [AGCTCAGGCAAGAATCGCCACGAGGTTAAATCTTTCCCCATTGCGGCAAAGTACCCTTTATTGTTTAACCGTAAAAGATGGGTAGAAAACGACATGCTGGCGCATCGGAGGAAACGGAGGGAGACGTACGATTTGCCAGCGAAACACATGNAACACCAGCCACATCCGAGCGAACGAACGGCGGCTGATCATTGTGCTCGAACGGGGCTCANGCTTGAAACGGTCAAGGTGGGCCAAGTGTTTGAGCTGCTAAACTGTGACGATCACATCAACATACTGAGGAGGAACAAGCGCGACCCGGGAAGCTGCCGGACCGACATAACGCACCAGTCGCTGTTGATGCTGATGGACTCGCCGCTAAACCGGGCCGGACTGTTGCAAGTGTTCGTGAACGACGGAAACAGGAACGTNCTGATCGAAATAGATCCGGAAGANGAGAATTCCGCGC]




>consensus_2037#1
AGCTCAGGCAAGAATCGCCACGAGGTTAAATCTTTCCCCATTGCGGCAAAGTACCCTTTA
TTGTTTAACCGTAAAAGATGGGTAGAAAACGACATGCTGGCGCATCGGAGGAAACGGAGG
GAGACGTACGATTTGCCAGCGAAACACATGNAACACCAGCCACATCCGAGCGAACGAACG
GCGGCTGATCATTGTGCTCGAACGGGGCTCANGCTTGAAACGGTCAAGGTGGGCCAAGTG
TTTGAGCTGCTAAACTGTGACGATCACATCAACATACTGAGGAGGAACAAGCGCGACCCG
GGAAGCTGCCGGACCGACATAACGCACCAGTCGCTGTTGATGCTGATGGACTCGCCGCTA
AACCGGGCCGGACTGTTGCAAGTGTTCGTGAACGACGGAAACAGGAACGTNCTGATCGAA
ATAGATCCGGAAGANGAGAATTCCGCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2037#0      --------CCGCATCTACGGCACA--CAAATCTTTCCCCATTGCGGCAAAAGTACCTTTA 50
consensus_2037#1      AGCTCAGGCAAGAATCGCCACGAGGTTAAATCTTTCCCCATTGCGGCAAAGTACCCTTTA 60
                              *   *    *  *      ***********************    ******

consensus_2037#0      TTGTTTAACCGTAAAAGATGGGTAGAAAACGACATGCTGGCGCATCGGAGGAAACGGAGG 110
consensus_2037#1      TTGTTTAACCGTAAAAGATGGGTAGAAAACGACATGCTGGCGCATCGGAGGAAACGGAGG 120
                      ************************************************************

consensus_2037#0      GAGA-GTACGATTTGCCAGCGAAACACATGAA-CACCAGCCACATCCGAGCGAACGAACG 168
consensus_2037#1      GAGACGTACGATTTGCCAGCGAAACACATGNAACACCAGCCACATCCGAGCGAACGAACG 180
                      **** ************************* * ***************************

consensus_2037#0      GCGGCTGATCATTGTGCTCGAA-GGGGCTCAG-CTTGAAACGGTCAAGGTGGGCCAAGTG 226
consensus_2037#1      GCGGCTGATCATTGTGCTCGAACGGGGCTCANGCTTGAAACGGTCAAGGTGGGCCAAGTG 240
                      ********************** ********  ***************************

consensus_2037#0      TTTGAGCTGCTAAACTGTGACGATCACATCAACATACTGAGGAGGAACAAGCGCGACCCG 286
consensus_2037#1      TTTGAGCTGCTAAACTGTGACGATCACATCAACATACTGAGGAGGAACAAGCGCGACCCG 300
                      ************************************************************

consensus_2037#0      GGAAGCTGCCGGCCCGACATAACGCACCAGTCGCTGTTGATGCTGATGGACTCGCCGCTA 346
consensus_2037#1      GGAAGCTGCCGGACCGACATAACGCACCAGTCGCTGTTGATGCTGATGGACTCGCCGCTA 360
                      ************ ***********************************************

consensus_2037#0      AACCGGGCCGGACTGTTGCAAGTGTTCGTGAA-GACGGAAA--AGAACGTTCTGATCGAA 403
consensus_2037#1      AACCGGGCCGGACTGTTGCAAGTGTTCGTGAACGACGGAAACAGGAACGTNCTGATCGAA 420
                      ******************************** ********   ****** *********

consensus_2037#0      ATAGATCCGCAA-ACGAGAATTCCGCGCACCTTCAAACGGTTTGCCGGTTTGATGGTGCA 462
consensus_2037#1      ATAGATCCGGAAGANGAGAATTCCGCGC-------------------------------- 448
                      ********* ** * *************                                

consensus_2037#0      ACTGCTGCACAAATTTTCCGTCAAGGCAGCCGATTCGGATAAGAAGCTGATGAGAATTAT 522
consensus_2037#1      ------------------------------------------------------------
                                                                                  

consensus_2037#0      AAAAAATCCAATCAGCAACCATCTGCCTGTCGGGTGCAGAAAGATAGCGATGTCTTTCAG 582
consensus_2037#1      ------------------------------------------------------------
                                                                                  

consensus_2037#0      CGCCAGCGAGGTGAAGAACGCGAAGGAGCTTGGTGCCGGCGGCCAACGAACCGTTGACGC 642
consensus_2037#1      ------------------------------------------------------------
                                                                                  

consensus_2037#0      TGGTCGTTGGCGCGTTTGCGCACGGCAATCTGAACCTAGACTAT 686
consensus_2037#1      --------------------------------------------