cluster # 2043

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Anopheles gambiae
cluster # 2043 cluster # 2043 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2043#0 length = 590 sequences # 1

consensus_2043#1 length = 536 sequences # 1

consensusID : consensus_2043#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence

                              [CCGCCCACGCGTCCGGTCCGAAACGAATGACGACTCGCTTACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTCCGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGACGGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGAAACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCCGGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGCCGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGAACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGCTGCAACCGGTGCCGAAACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAGCGGAAAGCGCATTTGAAGAGCCGCAGCCGGATGTGCCGAATGTTGGTGCTAGCGTGTCGAAGGAATCGTTCGGGG]

[+] EMBL BM612941             [CCGCCCACGCGTCCGGTCCGAAACGAATGACGACTCGCTTACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTCCGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGACGGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGAAACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCCGGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGCCGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGAACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGCTGCAACCGGTGCCGAAACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAGCGGAAAGCGCATTTGAAGAGCCGCAGCCGGATGTGCCGAATGTTGGTGCTAGCGTGTCGAAGGAATCGTTCGGGG]




>consensus_2043#0
CCGCCCACGCGTCCGGTCCGAAACGAATGACGACTCGCTTACCTTCGATTTGGGCAACGA
CGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTCCGACGACGAGAGTGGCATCAA
ACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGACGGACGACTGGGTACGCGATGA
GTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGAAACCAGTGCGACAGTGCAAAG
TGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCCGGTGCCCGTTGAACCGGCCGT
AAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGCCGGCTGCCAGGCAGCTCCCGT
GCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGAACCGACCACCACTCGGAGCAG
GGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGCTGCAACCGGTGCCGAAACAAC
GGCGCTGCCTACTACGACGGAGGATGAGGTCGCAGCGGAAAGCGCATTTGAAGAGCCGCA
GCCGGATGTGCCGAATGTTGGTGCTAGCGTGTCGAAGGAATCGTTCGGGG

consensusID : consensus_2043#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGATAAAAGATGTCCGAAACGAATGACGACTCGCTTACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTCCGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGACGGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGAAACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCCGGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGCCGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGAACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGCTGCAACCGGTGCCGACACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAG]

[+] EMBL BM582704             [CCGCGGACGCGTGGGCGGACGCGTGGGATAAAAGATGTCCGAAACGAATGACGACTCGCTTACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTCCGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGACGGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGAAACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCCGGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGCCGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGAACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGCTGCAACCGGTGCCGACACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAG]




>consensus_2043#1
CCGCGGACGCGTGGGCGGACGCGTGGGATAAAAGATGTCCGAAACGAATGACGACTCGCT
TACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTC
CGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGAC
GGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGA
AACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCC
GGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGC
CGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGA
ACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGC
TGCAACCGGTGCCGACACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2043#0      ------------CCGCCCACGCGTCCG---------GTCCGAAACGAATGACGACTCGCT 39
consensus_2043#1      CCGCGGACGCGTGGGCGGACGCGTGGGATAAAAGATGTCCGAAACGAATGACGACTCGCT 60
                                    **  ******  *         ************************

consensus_2043#0      TACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTC 99
consensus_2043#1      TACCTTCGATTTGGGCAACGACGATCCTGCCATTCTTAATGAGGACGAACTTTTGCTGTC 120
                      ************************************************************

consensus_2043#0      CGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGAC 159
consensus_2043#1      CGACGACGAGAGTGGCATCAAACTCGACCAGCCGGATGAAGATTTCCTGCTGGAAGAGAC 180
                      ************************************************************

consensus_2043#0      GGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGA 219
consensus_2043#1      GGACGACTGGGTACGCGATGAGTTGGTAGCGTCGAGAACTGTGGTGCAACCGAAAAGTGA 240
                      ************************************************************

consensus_2043#0      AACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCC 279
consensus_2043#1      AACCAGTGCGACAGTGCAAAGTGTGCCCCGTGACAGTGAAACGTCCGCACCACGTCCGCC 300
                      ************************************************************

consensus_2043#0      GGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGC 339
consensus_2043#1      GGTGCCCGTTGAACCGGCCGTAAGCCGGTGCGATGATGAGAGTGAACCAACAGAGGGAGC 360
                      ************************************************************

consensus_2043#0      CGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGA 399
consensus_2043#1      CGGCTGCCAGGCAGCTCCCGTGCCGGCACATCAAACTTTCCACGTCGATCCACCCATCGA 420
                      ************************************************************

consensus_2043#0      ACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGC 459
consensus_2043#1      ACCGACCACCACTCGGAGCAGGGACGATACTGGCGACGAGGCGAATGTAGAGGATGTTGC 480
                      ************************************************************

consensus_2043#0      TGCAACCGGTGCCGAAACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAGCGGA 519
consensus_2043#1      TGCAACCGGTGCCGACACAACGGCGCTGCCTACTACGACGGAGGATGAGGTCGCAG---- 536
                      *************** ****************************************    

consensus_2043#0      AAGCGCATTTGAAGAGCCGCAGCCGGATGTGCCGAATGTTGGTGCTAGCGTGTCGAAGGA 579
consensus_2043#1      ------------------------------------------------------------
                                                                                  

consensus_2043#0      ATCGTTCGGGG 590
consensus_2043#1      -----------