These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2053#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [CCGCCCACGCGTCCGACCGAGCCTATACGAGATACATTGCCGTGTCGTCTACCGCGAACAAATCTCTGGCCACACAAACGCACACCCACACGAGAGGCTCGGTACAAGAAAGTGAATCGAAACCCGTCGCACCGAGCACTAGCAGCAGCAGAAACTTTCCATTTCTACTGTGTCAACGGTGTTCTAGTCGATCTCCTTCTGGTTCCTGCGATGGATCTCTTCCTGTTGTGATTGTTGCTGACTGTTGTGTGTCAATGTTTTCGAAACCGAACCACAACCTTATTTCCACGGAGTTGGTCGTCGTGTTGCGAAAGAGTCGAAAGTTACGAGCAGATCCTTAAAAGTACCGCCTAGTAGCACTTTACCACCTTACCACAAAAAAAACACCGGAAGTATTCACTCTCTGATGGCTAAGAGCAACCACAATCAATTAGGATGCTACGTCATGATCGCACTTTTCGTGGCCGGAAAGGTGCAGTGCCTACCGGACCGAGCGGAACCAGCGGGACAGCTGACGACGGTCCCGGAGCGGGTCGATGGATCGACGGAATCCACTACAGACGACGTTGCTGCCACGGTCACCGAAGACGATCTCTACTTAGTAGATACCACCACCACCACGCAGCAGAGCATCAAAACGACGACACATGATCGGGTCTTGT] [+] EMBL BM601524 [CCGCCCACGCGTCCGACCGAGCCTATACGAGATACATTGCCGTGTCGTCTACCGCGAACAAATCTCTGGCCACACAAACGCACACCCACACGAGAGGCTCGGTACAAGAAAGTGAATCGAAACCCGTCGCACCGAGCACTAGCAGCAGCAGAAACTTTCCATTTCTACTGTGTCAACGGTGTTCTAGTCGATCTCCTTCTGGTTCCTGCGATGGATCTCTTCCTGTTGTGATTGTTGCTGACTGTTGTGTGTCAATGTTTTCGAAACCGAACCACAACCTTATTTCCACGGAGTTGGTCGTCGTGTTGCGAAAGAGTCGAAAGTTACGAGCAGATCCTTAAAAGTACCGCCTAGTAGCACTTTACCACCTTACCACAAAAAAAACACCGGAAGTATTCACTCTCTGATGGCTAAGAGCAACCACAATCAATTAGGATGCTACGTCATGATCGCACTTTTCGTGGCCGGAAAGGTGCAGTGCCTACCGGACCGAGCGGAACCAGCGGGACAGCTGACGACGGTCCCGGAGCGGGTCGATGGATCGACGGAATCCACTACAGACGACGTTGCTGCCACGGTCACCGAAGACGATCTCTACTTAGTAGATACCACCACCACCACGCAGCAGAGCATCAAAACGACGACACATGATCGGGTCTTGT] consensusID : consensus_2053#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [AGGCAGAATCGNCACGAGGTGCATTTTAGCACTTTTCGTGGCGGAAAGGTGCAGTGCCTACCGGACCGAGTGGAACCAGCGGGACAACTGACGACGGTCCCGGAGCGGGTCGATGGACCGACGGAATCCACTACAGAGCATCAAGACGACGACACATGATCGGGTCCTGTTTACCGATACGCCTGTCATGGACGCTATTACGATCGTATGGTACCTGGCCACCTTTATCGCGCTGATATCGTTCTTCCTGGTGATGGCCTGTGCCGATCACAACCGCTGCCGGTCGCGCAAACCATCGTCCAGCGAGCTGACTCCACCGCCGACACCGGCTCCCTCCTACCATCACTTTGCACCGCCCAGCTACGATTCGCTCGTGTTCGAGAAGGATAACGACAGCGATATTCATCATCCCGTACGATACTCGCATCGATGGTGCCCATCACGCACGGAGCGTTGACGATCTG] [+] EMBL BX468535 [AGGCAGAATCGNCACGAGGTGCATTTTAGCACTTTTCGTGGCGGAAAGGTGCAGTGCCTACCGGACCGAGTGGAACCAGCGGGACAACTGACGACGGTCCCGGAGCGGGTCGATGGACCGACGGAATCCACTACAGAGCATCAAGACGACGACACATGATCGGGTCCTGTTTACCGATACGCCTGTCATGGACGCTATTACGATCGTATGGTACCTGGCCACCTTTATCGCGCTGATATCGTTCTTCCTGGTGATGGCCTGTGCCGATCACAACCGCTGCCGGTCGCGCAAACCATCGTCCAGCGAGCTGACTCCACCGCCGACACCGGCTCCCTCCTACCATCACTTTGCACCGCCCAGCTACGATTCGCTCGTGTTCGAGAAGGATAACGACAGCGATATTCATCATCCCGTACGATACTCGCATCGATGGTGCCCATCACGCACGGAGCGTTGACGATCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2053#0 CCGCCCACGCGTCCGACCGAGCCTATACGAGATACATTGCCGTGTCGTCTACCGCGAACA 60 consensus_2053#1 ------------------------------------------------------------ consensus_2053#0 AATCTCTGGCCACACAAACGCACACCCACACGAGAGGCTCGGTACAAGAAAGTGAATCGA 120 consensus_2053#1 ------------------------------------------------AGGCAGAATCGN 12 * ****** consensus_2053#0 AACCCGTCGCACCG-AGCACTAGCAGCAGCAGAAACTTTCCATTTCTACTGTGTCAACGG 179 consensus_2053#1 CACGAGGTGCATTTTAGCACTTTTCGTGGCGGAAAGGTGCAGTGCCTACCGGACCGA-GT 71 ** * *** ****** * ** **** * * * **** * * * * consensus_2053#0 TGTTCTAGTCGATCTCCTTCTGGT--TCCTGCGATGGATCTCTTCCTGTTGTGATTGTTG 237 consensus_2053#1 GGAACCAGCGGGACAACTGACGACGGTCCCGGAGCGGGTC----GATGGACCGACGGA-A 126 * * ** * * ** * *** * ** ** ** ** * consensus_2053#0 CTGACTGTTGTGTGTCAATGTTTTCGAAACCGAACCACAACCTTATTTCCACGGAGTTGG 297 consensus_2053#1 TCCACTACAGAGCATCAA-GACGACGACACATGATCGGGTCCTGTTTACCGATACGCCTG 185 *** * * **** * *** ** * * *** ** ** * * consensus_2053#0 TCGTCG----TGTTGCGAAAGAGTCGAAAGTTACGAGCAGATCCTTAAAAGTACCG--CC 351 consensus_2053#1 TCATGGACGCTATTACGATCGTATGGTACCTGGCCACCTTTATCGCGCTGATATCGTTCT 245 ** * * * ** *** * * * * * * * * * ** ** * consensus_2053#0 TAGTAGCACTTTACCACCTTACCACAAAAAAAACACCGGAAGTATTCACTCTCTGATGGC 411 consensus_2053#1 TCCTGGTGATGGCCTGTGCCGAT-CACAACCGCTGCCGGTCGCGCAAACCATCGTCCAGC 304 * * * * * ** ** **** * ** ** ** consensus_2053#0 TAAGAGCAACCACAATCAATTAGGATGCTACGTCATGATCGCACTTTTCGTGGCCGGAAA 471 consensus_2053#1 GAGCTGACTCCACCGCCGACACCG--GCTCCCTCCTACCATCACTTTGCACCGCC---CA 359 * * **** * * * *** * ** * ****** * *** * consensus_2053#0 GGTGCAGTGCCTACCGGACCGAGCGGAACCAGCGGGACAGCTGACGACGGTCCCGGAGCG 531 consensus_2053#1 GCTACGATTCGCTCGTGTTCGAGAAGGAT-AACGACAGCGATATTCATCATCCCGTAC-- 416 * * * * * * * **** * * * ** * * * * ***** * consensus_2053#0 GGTCGATGGATCGACGGAATCCACTACAGACGACGTTGCTGCCACGGTCACCGAAGACGA 591 consensus_2053#1 GATACTCGCATCGATGGTGCCCATCACGCACGGAGC-GTTG--ACGATCTG--------- 464 * * * ***** ** *** ** *** * * ** *** ** consensus_2053#0 TCTCTACTTAGTAGATACCACCACCACCACGCAGCAGAGCATCAAAACGACGACACATGA 651 consensus_2053#1 ------------------------------------------------------------ consensus_2053#0 TCGGGTCTTGT 662 consensus_2053#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||