|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2058#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 961 fasta sequence
[GAATGCCCGAGGCGTGTGTAGGAAGAGCACTGAAGAACACAAGCAGCAAGCAAACAAACACTTACAAACATGCAACATGAGCCCGTTGCTAAGGAGTTCGGAGCGACGGGCCGATCTTCAGCTTAAACGTGTAAAATATTCATCGAAGCGACTTCTTCAAAAAGAAACAAAAAGTCTAACTGTTTTCGTCCACGGTGCAAGTTGTGACAGTCAGCGCAGTGCGAAGATGTAAAATTTAAGCAAACGGCACTCGGATAAGATGCATTGCATGGAGTAGTTTAGGGTTGATGATATTATTGCAATCAATACGTTCTGGGAGACGCCACCGAATGCGCCGTTCTTACACAGCTTCCTCTGCTCCGGTGTGAGAATGGTTCGAAGCAAGACTTAAAAACCGAAAACTCCAAAACGATCCCATTAGCGTCAGATACTGTGAAGCCGTTTGTGAACAAATTGGCCACATAATCGGGGCTAAATGCGCAACATCTTTCAGTTTTACCACGAGGTCACAGGAGGTGAGGAGTTGAGCTTCCCCGTCAGCCACATATATNGATTGCAATGCCTAGGTTGTAGGCCATTAGGTACGGTAACTNAAACANGCATTAGCCCTTCGGTAACAACCCAATTCTTCCTTGTCTTGCTTTCTTCCCAATAATGGATTGGTTGGGCCAATTTATNAAGCTTAACGTCCGATGTAATTACGAAGACGANATGGGTGCCACACATNGGTTGCGCATATAACAAAGNGAATGGGTNTCACGGNNCGANGAGCGCTNANGTNCAGCNAANATCTGTGAATATGGCTTCCATGGTAANAACACGACATGACAACGNAAGGNGTNCAGGAAGCTCGCGGTAAANAGTGGGTAAAAATNGCACGCCCCAGTAGTNCATCAGATAAGTAACGGGNGGGGACACTGAAAACAAAATGGTGTTATAACAATCCTGGNNCCACNTNCTN]
[+] EMBL AL932677 [GAATGCCCGAGGCGTGTGTAGGAAGAGCACTGAAGAACACAAGCAGCAAGCAAACAAACACTTACAAACATGCAACATGAGCCCGTTGCTAAGGAGTTCGGAGCGACGGGCCGATCTTCAGCTTAAACGTGTAAAATATTCATCGAAGCGACTTCTTCAAAAAGAAACAAAAAGTCTAACTGTTTTCGTCCACGGTGCAAGTTGTGACAGTCAGCGCAGTGCGAAGATGTAAAATTTAAGCAAACGGCACTCGGATAAGATGCATTGCATGGAGTAGTTTAGGGTTGATGATATTATTGCAATCAATACGTTCTGGGAGACGCCACCGAATGCGCCGTTCTTACACAGCTTCCTCTGCTCCGGTGTGAGAATGGTTCGAAGCAAGACTTAAAAACCGAAAACTCCAAAACGATCCCATTAGCGTCAGATACTGTGAAGCCGTTTGTGAACAAATTGGCCACATAATCGGGGCTAAATGCGCAACATCTTTCAGTTTTACCACGAGGTCACAGGAGGTGAGGAGTTGAGCTTCCCCGTCAGCCACATATATNGATTGCAATGCCTAGGTTGTAGGCCATTAGGTACGGTAACTNAAACANGCATTAGCCCTTCGGTAACAACCCAATTCTTCCTTGTCTTGCTTTCTTCCCAATAATGGATTGGTTGGGCCAATTTATNAAGCTTAACGTCCGATGTAATTACGAAGACGANATGGGTGCCACACATNGGTTGCGCATATAACAAAGNGAATGGGTNTCACGGNNCGANGAGCGCTNANGTNCAGCNAANATCTGTGAATATGGCTTCCATGGTAANAACACGACATGACAACGNAAGGNGTNCAGGAAGCTCGCGGTAAANAGTGGGTAAAAATNGCACGCCCCAGTAGTNCATCAGATAAGTAACGGGNGGGGACACTGAAAACAAAATGGTGTTATAACAATCCTGGNNCCACNTNCTN]
consensusID : consensus_2058#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 832 fasta sequence
[AGATCCCCGAGGNTAAAACTCCAAAACGATCCCATTAGCGGCAGATACTGTTGAAGCCGTTGTGAACAAATTGGCAACATAATCGGGGCTAAATGCGCAACCATCTTTCAGTTGACAGAGGTCACAGAGGTGAGGAGTTTGAGCTTCCCGTCAGCAACATATATAGATTGCAATGCTAGTTTTGCACAGTTCTGTTACTAACTCAGCAAAACCTTCGTAAAACCAATTCTTCCAATTCTTTGCTTCTTCCATTTGTTTGTTGCCATTTTTTAACTAAGTCGATTATAAAGAAGATGATGGTACAAAATTGTGTCGATTATAACTTAACGATTATTGCGTCTTCCGTGCTGAAGCTTTTAGGATTGACTCGAAATATCTGTGTAATTTTGCGTTCCATGGCAAACAAACCGCAAATCAGTACGATCAGGCAACAGGTAAGAACGGTAGAAACGCTTCTCGTATGTACTAAAAACGGTGTGTAACAGCATTTCCGCTACACACTCACCCAATAATGAACAACTGCAACATCAACAAGAGAATAAGTAGGCCTANCGCGCATTGGACGGACGGAACAAAAGGTAACACGGTAAGGGGAAAAACCAAGGAACAAACACTAATACGTCAGGNGGCCACTTCCTATCGTTAAAACCATTGAGTTAAANCACCACCACAAACTAAGGAGTCTAAGCCCGCGAAACGGTCCAGGTCCAGAGGCCGGGGCGCAGCACGCGGCAAACACGGAANACACAATAACACNACACAACCATNTCACAACCTAAAATCGCAAATAACACCGCAAATGAAACCACCCAACAGGACACAACNACAACAC]
[+] EMBL AL695476 [AGATCCCCGAGGNTAAAACTCCAAAACGATCCCATTAGCGGCAGATACTGTTGAAGCCGTTGTGAACAAATTGGCAACATAATCGGGGCTAAATGCGCAACCATCTTTCAGTTGACAGAGGTCACAGAGGTGAGGAGTTTGAGCTTCCCGTCAGCAACATATATAGATTGCAATGCTAGTTTTGCACAGTTCTGTTACTAACTCAGCAAAACCTTCGTAAAACCAATTCTTCCAATTCTTTGCTTCTTCCATTTGTTTGTTGCCATTTTTTAACTAAGTCGATTATAAAGAAGATGATGGTACAAAATTGTGTCGATTATAACTTAACGATTATTGCGTCTTCCGTGCTGAAGCTTTTAGGATTGACTCGAAATATCTGTGTAATTTTGCGTTCCATGGCAAACAAACCGCAAATCAGTACGATCAGGCAACAGGTAAGAACGGTAGAAACGCTTCTCGTATGTACTAAAAACGGTGTGTAACAGCATTTCCGCTACACACTCACCCAATAATGAACAACTGCAACATCAACAAGAGAATAAGTAGGCCTANCGCGCATTGGACGGACGGAACAAAAGGTAACACGGTAAGGGGAAAAACCAAGGAACAAACACTAATACGTCAGGNGGCCACTTCCTATCGTTAAAACCATTGAGTTAAANCACCACCACAAACTAAGGAGTCTAAGCCCGCGAAACGGTCCAGGTCCAGAGGCCGGGGCGCAGCACGCGGCAAACACGGAANACACAATAACACNACACAACCATNTCACAACCTAAAATCGCAAATAACACCGCAAATGAAACCACCCAACAGGACACAACNACAACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2058#0 GAATGCCCGAGGCGTGTGTAGGAAGAGCACTGAAGAACACAAGCAGCAAGCAAACAAACA 60
consensus_2058#1 ------------------------------------------------------------
consensus_2058#0 CTTACAAACATGCAACATGAGCCCGTTGCTAAGGAGTTCGGAGCGACGGGCCGATCTTCA 120
consensus_2058#1 ----------------AGATCCCCGAGGNTAAA-ACTCCAAAACGAT---CCCATTAGCG 40
* **** * *** * * * * *** ** ** *
consensus_2058#0 GCTTAAACGTGTAAAATATTCATCGAAGCGACTTCTTCAAAAAGAAACAAAAAGTCTAAC 180
consensus_2058#1 GCAGATACTGTTGAAGCCGTTGT--GAACAAATTGGC--AACATAATCGGGG---CTAAA 93
** * ** * ** * * * * * ** ** * ** * ****
consensus_2058#0 TGTTTTCGTCCACGGTGCAAGTTGTGACAGTCAGCGCAGTGCGAAGATGTAAAATTTAAG 240
consensus_2058#1 TGC--GCAACCATCTTTCAGTTGACAGAGGTCACAGAGGTGAGGAGTT-TGAGCTTCCCG 150
** * *** * ** * **** * *** * ** * * * ** *
consensus_2058#0 CAAACGGCACTCGGATAAGATGCATTGCATGGAGTAGTTTAGGGTTGATGATATTATTGC 300
consensus_2058#1 TCAGCAACATAT--ATAGATTGCAATGCT---AGTTTTGCACAGTTC-TGTTACTAACTC 204
* * ** *** **** *** *** * * *** ** ** ** *
consensus_2058#0 AATCAATACGTTCTGGGAGACGCCACCGAATGCGCCGTTCTTACACAGCTTCCTCTGCTC 360
consensus_2058#1 AG-CAAAACCTTCGTAAA------ACCAATTCTTCCAATTCTTTGCTTCTTCCATTTGTT 257
* *** ** *** * *** * * ** * * * ***** * *
consensus_2058#0 CGGTGTGAGAATGGTTCGAAGCAAGACTTAAAAAC--CGAAAACTCCAAAACGATCCCAT 418
consensus_2058#1 TGTTGCCATTTTTTAACTAAGTCGATTATAAAGAAGATGATGGTACAAAATTGTGTCGAT 317
* ** * * * *** **** * ** * *** * * **
consensus_2058#0 TAGCGTCAGAT-ACTGTGAAGCCGTTTGTGAACAAATTGGCCACATAATCGGGGCTAAAT 477
consensus_2058#1 TATAACTTAACGATTATTGCGTCTTCCGTGCTGAAGCT---TTTAGGATTGACTCGAAAT 374
** * * * * * * * *** ** * * ** * * ****
consensus_2058#0 GCGCA-ACATCTTTCAGTTTTACCACGAGGTCACAGGAGGTGAGGAGTTGAGCTTCCCCG 536
consensus_2058#1 ATCTGTGTAATTTTGCGTTCCATGGCAAACAAACCGCAAATCAGTA--CGA-----TCAG 427
* *** *** * * * ** * * * ** * ** * *
consensus_2058#0 TCAGCCACATATATNGATTGCAATGCCTAGGTTGTAGGCCATTAGGTACGGTAACTNAAA 596
consensus_2058#1 GCAACAGGTAAGAACGGTAGAAACGCTT--CTCGTATGT-ACTAAAAACGGTG------- 477
** * * * * * * ** ** * * *** * * ** *****
consensus_2058#0 CANGCATTAGCCCTTCGGTAACAACCCAATTCTTCCTTGTCTTGCTTTCTTCCCAATAAT 656
consensus_2058#1 --TGTAACAGCATTTCCGCTACACACTCACCCAATAATGAACAACTGCAACATCAACAAG 535
* * *** *** * *** * * * ** ** *** **
consensus_2058#0 GGATTGGTTGGGCCAATTTATNAAGCTTAACGTCCGATGTAATTACGAAGACGANATGGG 716
consensus_2058#1 AGAATAAGTAGGCCTANCG--CGCATTGGACGGACGGAACAAAAGGTAACACGGTAAGGG 593
** * * **** * * *** ** ** ** *** * ***
consensus_2058#0 TGCCACACATNGGTTGCGCATATAACAAAGNGAATGGGTNTCACGGNNCGANGAGCGC-T 775
consensus_2058#1 GAAAAACCAAGGAACAAACAC-TAATACGTCAGGNGGCCACTTCCTATCGTTAAAACCAT 652
* ** * ** *** * ** * ** * * *
consensus_2058#0 NANGTNCAGCNAANATCTGTGAATATGGCTTCCATGGTAANAACACGACATGACAACGNA 835
consensus_2058#1 TGAGTTAAANCACCACCACAAACTAAGGAGTCTAAGCCCGCGAAACGGTCCAGGTCCAGA 712
** * * * * * ** ** ** * * * *** * *
consensus_2058#0 AGGNGTNCAGGAAGCTCGCGGTAAANAGTGGGTAAA-AATNGCACGCCCCAGTAGTNCAT 894
consensus_2058#1 GGCCG-GGGCGCAGCACGCGGCAAACACGGAANACACAATAACACNACACAACCATNTCA 771
* * * *** ***** *** * * * * *** *** * ** **
consensus_2058#0 CAGATAAGTAACGGGNGGGGACACTGAAAACAAAATGGTGTTATAACAATCCTGGNNCCA 954
consensus_2058#1 CAACCTAA-AATCGCAAATAACACCGCAAATGAAACCACCCAACAG-GACACAACNACAA 829
** * ** * **** * *** *** * * * * * * *
consensus_2058#0 CNTNCTN 961
consensus_2058#1 CAC---- 832
*
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||