cluster # 2063

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Anopheles gambiae
cluster # 2063 cluster # 2063 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2063#0 length = 611 sequences # 1

consensus_2063#1 length = 395 sequences # 1

consensusID : consensus_2063#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence

                              [GGACGCACGGTCACGGCTCGCCGCAGTGCAATCATAGTGTGTGTGTGTGTGTCTGTGTGTGAGGAATTGTGACCGGTCGGGAAAATGATTGGTGCACGTGGTTGCATGGCAAACGATTTGATTGCGTGCGTTGTGCTTTCTGCGCTTGTCGCGCTACTGCTGGCAGCGAAGCCGGGCGCCTGCACCTATCGCTACAATTATGAAGATTATGACACGATGATGGGTACGTGCCGGGAGAACGAGGTGTGCAACATCGTGCACCACCGGCACTGGATGCCGAGCACGGTGGACAAGGTGTGCCGGTGCCCGCTCAACACGCCCAGCTGCCCGGTGGTGCATACGCGCCACGGCAACGTGATGAACGTGAACAGCCGGACGCAGATGAAGTTCTGCGCACCGCTGCGCAATCTGCGCCCGTGCCGCGACGGCGAGATTGCGCTGCGCCGCAAAACGCTCTACCAGTCGTACGGCGTGAAGAACGTGTCGATCGTGGTCGACTGTCTGTGCGACATCGGCAGAGCTACTGGACGTTTCACAACCGCTCCGGGGAGGATTTTAACGATGCGCACCATCTGTTTACGGTGGTGCAGAATTACAAGTGCGTCGCAATG]

[+] EMBL BX629081             [GGACGCACGGTCACGGCTCGCCGCAGTGCAATCATAGTGTGTGTGTGTGTGTCTGTGTGTGAGGAATTGTGACCGGTCGGGAAAATGATTGGTGCACGTGGTTGCATGGCAAACGATTTGATTGCGTGCGTTGTGCTTTCTGCGCTTGTCGCGCTACTGCTGGCAGCGAAGCCGGGCGCCTGCACCTATCGCTACAATTATGAAGATTATGACACGATGATGGGTACGTGCCGGGAGAACGAGGTGTGCAACATCGTGCACCACCGGCACTGGATGCCGAGCACGGTGGACAAGGTGTGCCGGTGCCCGCTCAACACGCCCAGCTGCCCGGTGGTGCATACGCGCCACGGCAACGTGATGAACGTGAACAGCCGGACGCAGATGAAGTTCTGCGCACCGCTGCGCAATCTGCGCCCGTGCCGCGACGGCGAGATTGCGCTGCGCCGCAAAACGCTCTACCAGTCGTACGGCGTGAAGAACGTGTCGATCGTGGTCGACTGTCTGTGCGACATCGGCAGAGCTACTGGACGTTTCACAACCGCTCCGGGGAGGATTTTAACGATGCGCACCATCTGTTTACGGTGGTGCAGAATTACAAGTGCGTCGCAATG]




>consensus_2063#0
GGACGCACGGTCACGGCTCGCCGCAGTGCAATCATAGTGTGTGTGTGTGTGTCTGTGTGT
GAGGAATTGTGACCGGTCGGGAAAATGATTGGTGCACGTGGTTGCATGGCAAACGATTTG
ATTGCGTGCGTTGTGCTTTCTGCGCTTGTCGCGCTACTGCTGGCAGCGAAGCCGGGCGCC
TGCACCTATCGCTACAATTATGAAGATTATGACACGATGATGGGTACGTGCCGGGAGAAC
GAGGTGTGCAACATCGTGCACCACCGGCACTGGATGCCGAGCACGGTGGACAAGGTGTGC
CGGTGCCCGCTCAACACGCCCAGCTGCCCGGTGGTGCATACGCGCCACGGCAACGTGATG
AACGTGAACAGCCGGACGCAGATGAAGTTCTGCGCACCGCTGCGCAATCTGCGCCCGTGC
CGCGACGGCGAGATTGCGCTGCGCCGCAAAACGCTCTACCAGTCGTACGGCGTGAAGAAC
GTGTCGATCGTGGTCGACTGTCTGTGCGACATCGGCAGAGCTACTGGACGTTTCACAACC
GCTCCGGGGAGGATTTTAACGATGCGCACCATCTGTTTACGGTGGTGCAGAATTACAAGT
GCGTCGCAATG

consensusID : consensus_2063#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [CAATAGCGACNCAGGTGTGTGTGTATGTGTGTGAGGAATTGTGACCGGTCGGGAAAATGATNGGNTGCACGTGGTTGCATGGCAAACGATAANGATTGCGTGCGTTGTGCTNTACTGCGCNTAGTCGCGCTACATGCTGGCAGCGAAGCCGGGCGCGCTGCACCTATANGCTACAATNATGAAGATAATGACACGATGATGGGTACGTGCCGGGAGAACGAGGTGTGCAACATCGTGCACCACCGGCACTGGATGCCNNAGCACGGTGGACAAGGTGTGCCGGTGCCCGCTNNAACACGCCCAGCTGCCCGGTGGTGCATACGCGCCAACGGCAACGTGATGAACGTGAACAGCCGGACGCAGATGAAGTCCTNGCCCACCCGCTNGCGCAATAT]

[+] EMBL BX619456             [CAATAGCGACNCAGGTGTGTGTGTATGTGTGTGAGGAATTGTGACCGGTCGGGAAAATGATNGGNTGCACGTGGTTGCATGGCAAACGATAANGATTGCGTGCGTTGTGCTNTACTGCGCNTAGTCGCGCTACATGCTGGCAGCGAAGCCGGGCGCGCTGCACCTATANGCTACAATNATGAAGATAATGACACGATGATGGGTACGTGCCGGGAGAACGAGGTGTGCAACATCGTGCACCACCGGCACTGGATGCCNNAGCACGGTGGACAAGGTGTGCCGGTGCCCGCTNNAACACGCCCAGCTGCCCGGTGGTGCATACGCGCCAACGGCAACGTGATGAACGTGAACAGCCGGACGCAGATGAAGTCCTNGCCCACCCGCTNGCGCAATAT]




>consensus_2063#1
CAATAGCGACNCAGGTGTGTGTGTATGTGTGTGAGGAATTGTGACCGGTCGGGAAAATGA
TNGGNTGCACGTGGTTGCATGGCAAACGATAANGATTGCGTGCGTTGTGCTNTACTGCGC
NTAGTCGCGCTACATGCTGGCAGCGAAGCCGGGCGCGCTGCACCTATANGCTACAATNAT
GAAGATAATGACACGATGATGGGTACGTGCCGGGAGAACGAGGTGTGCAACATCGTGCAC
CACCGGCACTGGATGCCNNAGCACGGTGGACAAGGTGTGCCGGTGCCCGCTNNAACACGC
CCAGCTGCCCGGTGGTGCATACGCGCCAACGGCAACGTGATGAACGTGAACAGCCGGACG
CAGATGAAGTCCTNGCCCACCCGCTNGCGCAATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2063#0      GGACGCACGGTCACGGCTCGCCGCAGTGCAATCATAGTGTGTGTGTGTGTGTCTGTGTGT 60
consensus_2063#1      ----------------------------CAATAGCGACNCAGGTGTGTGTGTATGTGTGT 32
                                                  ****          ********** *******

consensus_2063#0      GAGGAATTGTGACCGGTCGGGAAAATGATTGGT-GCACGTGGTTGCATGGCAAACGATT- 118
consensus_2063#1      GAGGAATTGTGACCGGTCGGGAAAATGATNGGNTGCACGTGGTTGCATGGCAAACGATAA 92
                      ***************************** **  ************************  

consensus_2063#0      TGATTGCGTGCGTTGTGCTTT-CTGCGCTT-GTCGCGCTAC-TGCTGGCAGCGAAGCCGG 175
consensus_2063#1      NGATTGCGTGCGTTGTGCTNTACTGCGCNTAGTCGCGCTACATGCTGGCAGCGAAGCCGG 152
                       ****************** * ****** * ********** ******************

consensus_2063#0      GCGC-CTGCACCTAT-CGCTACAATTATGAAGATTATGACACGATGATGGGTACGTGCCG 233
consensus_2063#1      GCGCGCTGCACCTATANGCTACAATNATGAAGATAATGACACGATGATGGGTACGTGCCG 212
                      **** **********  ******** ******** *************************

consensus_2063#0      GGAGAACGAGGTGTGCAACATCGTGCACCACCGGCACTGGATGCCGA-GCACGGTGGACA 292
consensus_2063#1      GGAGAACGAGGTGTGCAACATCGTGCACCACCGGCACTGGATGCCNNAGCACGGTGGACA 272
                      *********************************************   ************

consensus_2063#0      AGGTGTGCCGGTGCCCGCTCAA-CACGCCCAGCTGCCCGGTGGTGCATACGCGCCA-CGG 350
consensus_2063#1      AGGTGTGCCGGTGCCCGCTNNAACACGCCCAGCTGCCCGGTGGTGCATACGCGCCAACGG 332
                      *******************  * ********************************* ***

consensus_2063#0      CAACGTGATGAACGTGAACAGCCGGACGCAGATGAAGTTCTG---CGCACCGCTGCGCAA 407
consensus_2063#1      CAACGTGATGAACGTGAACAGCCGGACGCAGATGAAGTCCTNGCCCACCCGCTNGCGCAA 392
                      ************************************** **    * * *    ******

consensus_2063#0      TCTGCGCCCGTGCCGCGACGGCGAGATTGCGCTGCGCCGCAAAACGCTCTACCAGTCGTA 467
consensus_2063#1      TAT--------------------------------------------------------- 395
                      * *                                                         

consensus_2063#0      CGGCGTGAAGAACGTGTCGATCGTGGTCGACTGTCTGTGCGACATCGGCAGAGCTACTGG 527
consensus_2063#1      ------------------------------------------------------------
                                                                                  

consensus_2063#0      ACGTTTCACAACCGCTCCGGGGAGGATTTTAACGATGCGCACCATCTGTTTACGGTGGTG 587
consensus_2063#1      ------------------------------------------------------------
                                                                                  

consensus_2063#0      CAGAATTACAAGTGCGTCGCAATG 611
consensus_2063#1      ------------------------