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Anopheles gambiae
cluster # 2067 cluster # 2067       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2067#0 length = 1276 sequences # 1  
consensus_2067#1 length = 760 sequences # 1  

consensusID : consensus_2067#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1276
fasta sequence
                              [TCATGCCAAGAATCCGAGGTNATTTAGATCTGGATCCAGATGATCGACGCGACGAAACACGTAACTTCCAGCGCGCTGAGAGTGCGTATAACTACGTGGAAGCAAATATTGATACCACAGGAATCAAACGAGAGCCATATGCGCTGCGGGACATACCTACGAATGTTTCACACGAATAGAACACACTGCAAGGGATTGGGCCACTACGAACGCGCTACAACCAGCTTAGCGCTCAGAGTAATNGCGCNTGGCGTGATTGCTGNGGGGAACCTGGTNTCCNGGGCCCACCATTGCAGTANNATGGGGCACTNTCTTTTAAACCGGGCCTGGTATTNNCTTAAACACCTTTGTGCCTTAGGNGAACCGTATATNGNGGGNGCATACAATAGGTATCATCACTGCGTCACTTTTAACCCGTGGGCGGAAACCGAATTATAAAACCCCGNGGTAAGNACAACNAAGAAATAAGACCNGANATGGANGNGCNAGTTNAAACACCAGCTACGTNGGAAGAAAAAAAACATATACCCGGNCGCCAAGNGAGNGACGGCNCNCCGGANTTACATNCGGCATATTGGGGGNGGCCGCCGCCCNACCACAANCGATACCACGCGAGNNGCGCCAGCAGGACAGNAACACACAAGGGGGCACGAGAAACCCCCACCANAGGCGCCACAGAGCCGGCGNACACACAACAGGGAACGAACACAACAACACCGGCACCAAAGGGGCAGAAAAAACCACAGCGAACAAAGAGGCACCAGGCACACCATAGGCCAACATNCCCGGANAAACAACGCCAAAAACAAGGGANCACANNCAAANAAACCACCGGACAGCATCACANACAGACACAACGNCGGCCCACACGGGCAACACACACCACGANGGGTANAAACCATCACGAAACAACAANATATCATAAACAANAAATNAACNCCANCACAAAACACAAACAAGGGAANAAAACAACAAACCCANAANAAAGAAGGCNGAGAAACACGAAGNACAAAACAAACGAGACCACCCACACACANCAGCAGCAATAGNGANTAAACACCACNAGAGACGANCAGACAGNCAAAAGCANAACGAGGAGACGACCNCGACGGGANCAAACAAACCACGAAGGGNAACAACGCGAGNAAGCCCACCAAAAACCGNACCNCGCACGAACAGCAAACCAAAAGGGNGGANACCCCCAGACAGGAAAANNGACCAGCTAACCCNGAACAACCAAGAGCAACGNCGCAACCAAAAGGAGAGTCAAACAAGA]

[+] EMBL AL695542             [TCATGCCAAGAATCCGAGGTNATTTAGATCTGGATCCAGATGATCGACGCGACGAAACACGTAACTTCCAGCGCGCTGAGAGTGCGTATAACTACGTGGAAGCAAATATTGATACCACAGGAATCAAACGAGAGCCATATGCGCTGCGGGACATACCTACGAATGTTTCACACGAATAGAACACACTGCAAGGGATTGGGCCACTACGAACGCGCTACAACCAGCTTAGCGCTCAGAGTAATNGCGCNTGGCGTGATTGCTGNGGGGAACCTGGTNTCCNGGGCCCACCATTGCAGTANNATGGGGCACTNTCTTTTAAACCGGGCCTGGTATTNNCTTAAACACCTTTGTGCCTTAGGNGAACCGTATATNGNGGGNGCATACAATAGGTATCATCACTGCGTCACTTTTAACCCGTGGGCGGAAACCGAATTATAAAACCCCGNGGTAAGNACAACNAAGAAATAAGACCNGANATGGANGNGCNAGTTNAAACACCAGCTACGTNGGAAGAAAAAAAACATATACCCGGNCGCCAAGNGAGNGACGGCNCNCCGGANTTACATNCGGCATATTGGGGGNGGCCGCCGCCCNACCACAANCGATACCACGCGAGNNGCGCCAGCAGGACAGNAACACACAAGGGGGCACGAGAAACCCCCACCANAGGCGCCACAGAGCCGGCGNACACACAACAGGGAACGAACACAACAACACCGGCACCAAAGGGGCAGAAAAAACCACAGCGAACAAAGAGGCACCAGGCACACCATAGGCCAACATNCCCGGANAAACAACGCCAAAAACAAGGGANCACANNCAAANAAACCACCGGACAGCATCACANACAGACACAACGNCGGCCCACACGGGCAACACACACCACGANGGGTANAAACCATCACGAAACAACAANATATCATAAACAANAAATNAACNCCANCACAAAACACAAACAAGGGAANAAAACAACAAACCCANAANAAAGAAGGCNGAGAAACACGAAGNACAAAACAAACGAGACCACCCACACACANCAGCAGCAATAGNGANTAAACACCACNAGAGACGANCAGACAGNCAAAAGCANAACGAGGAGACGACCNCGACGGGANCAAACAAACCACGAAGGGNAACAACGCGAGNAAGCCCACCAAAAACCGNACCNCGCACGAACAGCAAACCAAAAGGGNGGANACCCCCAGACAGGAAAANNGACCAGCTAACCCNGAACAACCAAGAGCAACGNCGCAACCAAAAGGAGAGTCAAACAAGA]


>consensus_2067#0 TCATGCCAAGAATCCGAGGTNATTTAGATCTGGATCCAGATGATCGACGCGACGAAACAC GTAACTTCCAGCGCGCTGAGAGTGCGTATAACTACGTGGAAGCAAATATTGATACCACAG GAATCAAACGAGAGCCATATGCGCTGCGGGACATACCTACGAATGTTTCACACGAATAGA ACACACTGCAAGGGATTGGGCCACTACGAACGCGCTACAACCAGCTTAGCGCTCAGAGTA ATNGCGCNTGGCGTGATTGCTGNGGGGAACCTGGTNTCCNGGGCCCACCATTGCAGTANN ATGGGGCACTNTCTTTTAAACCGGGCCTGGTATTNNCTTAAACACCTTTGTGCCTTAGGN GAACCGTATATNGNGGGNGCATACAATAGGTATCATCACTGCGTCACTTTTAACCCGTGG GCGGAAACCGAATTATAAAACCCCGNGGTAAGNACAACNAAGAAATAAGACCNGANATGG ANGNGCNAGTTNAAACACCAGCTACGTNGGAAGAAAAAAAACATATACCCGGNCGCCAAG NGAGNGACGGCNCNCCGGANTTACATNCGGCATATTGGGGGNGGCCGCCGCCCNACCACA ANCGATACCACGCGAGNNGCGCCAGCAGGACAGNAACACACAAGGGGGCACGAGAAACCC CCACCANAGGCGCCACAGAGCCGGCGNACACACAACAGGGAACGAACACAACAACACCGG CACCAAAGGGGCAGAAAAAACCACAGCGAACAAAGAGGCACCAGGCACACCATAGGCCAA CATNCCCGGANAAACAACGCCAAAAACAAGGGANCACANNCAAANAAACCACCGGACAGC ATCACANACAGACACAACGNCGGCCCACACGGGCAACACACACCACGANGGGTANAAACC ATCACGAAACAACAANATATCATAAACAANAAATNAACNCCANCACAAAACACAAACAAG GGAANAAAACAACAAACCCANAANAAAGAAGGCNGAGAAACACGAAGNACAAAACAAACG AGACCACCCACACACANCAGCAGCAATAGNGANTAAACACCACNAGAGACGANCAGACAG NCAAAAGCANAACGAGGAGACGACCNCGACGGGANCAAACAAACCACGAAGGGNAACAAC GCGAGNAAGCCCACCAAAAACCGNACCNCGCACGAACAGCAAACCAAAAGGGNGGANACC CCCAGACAGGAAAANNGACCAGCTAACCCNGAACAACCAAGAGCAACGNCGCAACCAAAA GGAGAGTCAAACAAGA



consensusID : consensus_2067#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 760
fasta sequence
                              [GGCTGCGACCGATGCCGGGAGGGTGACGCTACGTTCGAGGAGCGTTTCAACATGATCTGCTGTCCCGCCTGTCGCCGGGAGTACTCGAAGGAGCTGAACCTGGAGGAACTGCCAACAGTGTGTGTGTACTGTTCGGCGGAAATTCCCTCCGAATGGTTAAGCCAAATTTTGGATCTGGATCCAGATGATCGTCGCGACGAAACACGTAACTTCCAGCGCGCTGAGAGTGCGTATAACTACGGCAAGCAAATATTGATCCACAGCAATCAAACGAGAGCCATTGCGCTGCGGCACATCCTCGAATGTTTCACACGAATAGCCACCTGCAAGGGATTGGCCCACTCGAACGCGCTCAACCAGCTAGCGCTAGAGTATGCGCTGCTAATGCGGGAACGGTTCGGTCACATGAGTTTGGAATTTTTAACCGGCTGTTTCTACCTGCTGGACGTTTGGGCTATGTTTTGCTATTACGGCGACGATGAACCGGAGCAGCAGGCCGAGGAGCGTACCGTGCTGAAACAGTTCCGCCAGGCGCTCGCTATGATTGGCGCCGACAATCGGGGGCAGATTTTGGATTACATGCAGCGGTACAAGATAATCGACGGGGAATCGATGGCAGAATGCATCGAAACAATGGAGCAAACGGCTTAATAACGCTTTGTTTTTTTTTTTGTAATTCAAATTTTAATTTCCTTTTCTTTGCTTCACCAACGGTTCGCGCATCGCCGGTGAGTGGTTACATTGTTTTTGTTTCGGGCGC]

[+] EMBL BX608716             [GGCTGCGACCGATGCCGGGAGGGTGACGCTACGTTCGAGGAGCGTTTCAACATGATCTGCTGTCCCGCCTGTCGCCGGGAGTACTCGAAGGAGCTGAACCTGGAGGAACTGCCAACAGTGTGTGTGTACTGTTCGGCGGAAATTCCCTCCGAATGGTTAAGCCAAATTTTGGATCTGGATCCAGATGATCGTCGCGACGAAACACGTAACTTCCAGCGCGCTGAGAGTGCGTATAACTACGGCAAGCAAATATTGATCCACAGCAATCAAACGAGAGCCATTGCGCTGCGGCACATCCTCGAATGTTTCACACGAATAGCCACCTGCAAGGGATTGGCCCACTCGAACGCGCTCAACCAGCTAGCGCTAGAGTATGCGCTGCTAATGCGGGAACGGTTCGGTCACATGAGTTTGGAATTTTTAACCGGCTGTTTCTACCTGCTGGACGTTTGGGCTATGTTTTGCTATTACGGCGACGATGAACCGGAGCAGCAGGCCGAGGAGCGTACCGTGCTGAAACAGTTCCGCCAGGCGCTCGCTATGATTGGCGCCGACAATCGGGGGCAGATTTTGGATTACATGCAGCGGTACAAGATAATCGACGGGGAATCGATGGCAGAATGCATCGAAACAATGGAGCAAACGGCTTAATAACGCTTTGTTTTTTTTTTTGTAATTCAAATTTTAATTTCCTTTTCTTTGCTTCACCAACGGTTCGCGCATCGCCGGTGAGTGGTTACATTGTTTTTGTTTCGGGCGC]


>consensus_2067#1 GGCTGCGACCGATGCCGGGAGGGTGACGCTACGTTCGAGGAGCGTTTCAACATGATCTGC TGTCCCGCCTGTCGCCGGGAGTACTCGAAGGAGCTGAACCTGGAGGAACTGCCAACAGTG TGTGTGTACTGTTCGGCGGAAATTCCCTCCGAATGGTTAAGCCAAATTTTGGATCTGGAT CCAGATGATCGTCGCGACGAAACACGTAACTTCCAGCGCGCTGAGAGTGCGTATAACTAC GGCAAGCAAATATTGATCCACAGCAATCAAACGAGAGCCATTGCGCTGCGGCACATCCTC GAATGTTTCACACGAATAGCCACCTGCAAGGGATTGGCCCACTCGAACGCGCTCAACCAG CTAGCGCTAGAGTATGCGCTGCTAATGCGGGAACGGTTCGGTCACATGAGTTTGGAATTT TTAACCGGCTGTTTCTACCTGCTGGACGTTTGGGCTATGTTTTGCTATTACGGCGACGAT GAACCGGAGCAGCAGGCCGAGGAGCGTACCGTGCTGAAACAGTTCCGCCAGGCGCTCGCT ATGATTGGCGCCGACAATCGGGGGCAGATTTTGGATTACATGCAGCGGTACAAGATAATC GACGGGGAATCGATGGCAGAATGCATCGAAACAATGGAGCAAACGGCTTAATAACGCTTT GTTTTTTTTTTTGTAATTCAAATTTTAATTTCCTTTTCTTTGCTTCACCAACGGTTCGCG CATCGCCGGTGAGTGGTTACATTGTTTTTGTTTCGGGCGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2067#0      TCATGCCAAGAATCCGAGGTNATTTAGATCTGGATCCAGATGATCGACGCGACGAAACAC 60
consensus_2067#1      ------------------------------------------------------------
                                                                                  

consensus_2067#0      GTAACTTCCAGCGCGCTGAGAGTGCGTATAACTACGTGGAAGCAAATATTGATACCACAG 120
consensus_2067#1      ------------------------------------------------------------
                                                                                  

consensus_2067#0      GAATCAAACGAGAGCCATATGCGCTGCGGGACATACCTACGAATGTTTCACACGAATAGA 180
consensus_2067#1      ------------------------------------------------------------
                                                                                  

consensus_2067#0      ACACACTGCAAGGGATTGGGCCACTACGAACGCGCTACAACCAGCTTAGCGCTCAGAGTA 240
consensus_2067#1      ------------------------------------------------------------
                                                                                  

consensus_2067#0      ATNGCGCNTGGCGTGATTGCTGNGGGGAACCTGGTNTCCNGGGCCCACCATTGCAGTANN 300
consensus_2067#1      ---------------------------------------GGCTGCGACCGATGCCG-GGA 20
                                                              *   * ***  *** *    

consensus_2067#0      ATGGGGCACTNTCTTTTAAACCGGGCCTGGTATTNNCTTAAACACCTTTGTGCCTTAGGN 360
consensus_2067#1      GGGTGACGCTACGTTCGAGGAGCGTTTCAACATGATCTGCTGT-CCCGCCTGTCGCCGGG 79
                        * * * **   **  *     *       **   **      **    ** *   ** 

consensus_2067#0      GAACCGTATATNGNGGGNGCATACAATAGGTATCATCACTGCGTCACTTTTAACCCGTGG 420
consensus_2067#1      AGTACTCGAAGGAGCTGAACCTGGAGGAACTGCCAACAGTGTGTGTGT----ACTGTTCG 135
                          *    *      *  * *  *  *  *  ** ** ** **   *    **   * *

consensus_2067#0      GCGGAAACCGAATTATAAAACCCCGNGGTAAGNACAACNAAGAAATAAGACCNGANATGG 480
consensus_2067#1      GCGGAAATTCCCTCCGAAT------GGTTAAGCCAAATTTTGGATCTGGATCC-AGATGA 188
                      *******     *   **        * ****   **    * *    ** *  * *** 

consensus_2067#0      ANGNGCNAGTTNAAACAC-CAGCTACGTNGGAAGAAAAAAAACATATACCCGGNCGCCAA 539
consensus_2067#1      TCGT-CGCGACGAAACACGTAACTTCCAGCGCGCTGAGAGTGCGTATAACT--ACGGCAA 245
                        *  *  *   ******  * ** *    *     * *   * **** *    ** ***

consensus_2067#0      GNGAGNGACGGCNCNCCGGANTTACATNCGGCATATTGGGGGNGGCCGCCGCCCNACCAC 599
consensus_2067#1      GCAAATATTGATCCACAGCAATCAAACGAGAGCCATTGC-----GCTGCGGCACATCCTC 300
                      *  *     *   * * * * * * *   *    ****      ** ** ** *  ** *

consensus_2067#0      AANCGATACCACGCGAGNNGC-GCCAGCAGGACAGNAACACACAAGGGGGCACGAGAAAC 658
consensus_2067#1      GAATG-TTTCACACGAATAGCCACCTGCAAGGGATTGGCCCACTCGAACGCGC------- 352
                       *  * *  *** ***   **  ** *** *  *    * ***  *   ** *       

consensus_2067#0      CCCCACCANAGGCGCCACAGAGCCGGCGNACACACAACAGGGAACGAACACAACAACACC 718
consensus_2067#1      -TCAACCAGC-------TAGCGCTAGAGTATGCGCTGCT-------AATGCGGGAACGGT 397
                        * ****          ** **  * * *  * *  *        **  *   ***   

consensus_2067#0      GGCACCAAAGGGGCAGAAAAAACCACAGCGAACAAAGAGGCACCAGGCACACCATAGGCC 778
consensus_2067#1      TCGGTCACATGAGTTTGGAATTTTTAACCGGCTGTTT--CTACCTGCTGGACGTTTGGGC 455
                           ** * * *     **      * **           *** *    **  * ** *

consensus_2067#0      AACATNCCCGGANAAACAACGCCAAAAACAAGGGANCACANNCAAANAAACCACCGGACA 838
consensus_2067#1      TATGTTTT-GCTATTACGGCGACGATGAACCGGAGCAGCAGGCCGAGGAGC----GTACC 510
                       *  *    *     **  ** * *  *   **     **  *  *  * *    * ** 

consensus_2067#0      GCATCACANACAGACACAACGNCGGCCCAC-ACGGGCAACACACACCACGANGGGTANAA 897
consensus_2067#1      GTGCTG-AAACAGTTCCGCCAGGCGCTCGCTATGATTGGCGCCGACAATCGGGGGCAGAT 569
                      *      * ****   *  *    ** * * * *     * *  ** *    *** * * 

consensus_2067#0      ACC--ATCACGAAACAACAANATATCATAAACAANAAATNAACNCCANCACAAAACACAA 955
consensus_2067#1      TTTGGATTAC-ATGCAGCGGTACAAGATAATCGACGGGGAATCGATGGCAGAATGCATCG 628
                           ** ** *  ** *   * *  **** * *      * *     ** **  **   

consensus_2067#0      ACAAGGGAANAAAACAACAAACCCANAANAAAGAAGGCNGAGAAACACGAAGNACAAAAC 1015
consensus_2067#1      A------AACAATGGAGCAAAC---GGCTTAATAACGCTTTGTTTTTTTTTTTGTAATTC 679
                      *      ** **   * *****        ** ** **   *             **  *

consensus_2067#0      AAACGA-GACCACCCACACACANCAGCAGCAATAGNGANTAAACACCACNAGAGA-CGAN 1073
consensus_2067#1      AAATTTTAATTTCCTTTTCTTTGCTTCACCAACGGT--TCGCGCATCGCCGGTGAGTGGT 737
                      ***     *   **    *    *  ** ***  *        ** * *  * **  *  

consensus_2067#0      CAGACAGNCAAAAGCANAACGAGGAGACGACCNCGACGGGANCAAACAAACCACGAAGGG 1133
consensus_2067#1      TACATTGTTTTTGTTTCGGGCGC------------------------------------- 760
                       * *  *                                                     

consensus_2067#0      NAACAACGCGAGNAAGCCCACCAAAAACCGNACCNCGCACGAACAGCAAACCAAAAGGGN 1193
consensus_2067#1      ------------------------------------------------------------
                                                                                  

consensus_2067#0      GGANACCCCCAGACAGGAAAANNGACCAGCTAACCCNGAACAACCAAGAGCAACGNCGCA 1253
consensus_2067#1      ------------------------------------------------------------
                                                                                  

consensus_2067#0      ACCAAAAGGAGAGTCAAACAAGA 1276
consensus_2067#1      -----------------------
                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)