cluster # 2078

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Anopheles gambiae
cluster # 2078 cluster # 2078 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2078#0 length = 301 sequences # 1

consensus_2078#1 length = 296 sequences # 1

consensusID : consensus_2078#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence

                              [TTTTTTATGGGAAAGACTAGGTACGTGTTGTGTGCCACCCCTGTACGTCTCCTGCACCTGGTGTCTGCTGGTCGTTTCNCTCCTTCCTTCCTACCACGATTGATTCGTTTAACAGTTTTTATTTTAGATTTGAAACTGATTTGATTCNATCGTTTCATGGTTGTTGTTGTTTTTTTTTTGCGTGTGTGTTTTGTTGCTGTTAAAACATTAAAGCCAATACCAAAAGCAATGCTAATCGAAATCGAATCTGGCAAAGGGCAAAGGGAACCGGTCCGAAACCGGCCGCCGTAGCCACCGGGTG]

[+] EMBL BX628721             [TTTTTTATGGGAAAGACTAGGTACGTGTTGTGTGCCACCCCTGTACGTCTCCTGCACCTGGTGTCTGCTGGTCGTTTCNCTCCTTCCTTCCTACCACGATTGATTCGTTTAACAGTTTTTATTTTAGATTTGAAACTGATTTGATTCNATCGTTTCATGGTTGTTGTTGTTTTTTTTTTGCGTGTGTGTTTTGTTGCTGTTAAAACATTAAAGCCAATACCAAAAGCAATGCTAATCGAAATCGAATCTGGCAAAGGGCAAAGGGAACCGGTCCGAAACCGGCCGCCGTAGCCACCGGGTG]




>consensus_2078#0
TTTTTTATGGGAAAGACTAGGTACGTGTTGTGTGCCACCCCTGTACGTCTCCTGCACCTG
GTGTCTGCTGGTCGTTTCNCTCCTTCCTTCCTACCACGATTGATTCGTTTAACAGTTTTT
ATTTTAGATTTGAAACTGATTTGATTCNATCGTTTCATGGTTGTTGTTGTTTTTTTTTTG
CGTGTGTGTTTTGTTGCTGTTAAAACATTAAAGCCAATACCAAAAGCAATGCTAATCGAA
ATCGAATCTGGCAAAGGGCAAAGGGAACCGGTCCGAAACCGGCCGCCGTAGCCACCGGGT
G

consensusID : consensus_2078#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence

                              [CCGGAGAGAAAAGACCAGCAGAACACCACCACACCGGGTGTAGGAGACGTACAGGGGTGGCACACAACACGTACCTAGTCTTTCCCATAAAAAACACACACAAAAAACGAAAAAGAAGCAGCCCCATGTTTGAGCTCCACATTTGGAAGATCAATAATTTACCAAACAATTTCCCACCACCACTTCCCGCTGCTTACTCTCCCCGTCGCCCCCCTGTTTTCCCCCTTCGTTATAGTAAGAGTGACCGTGTGTGTGTGTGTGTGTGTGTGTGACTTTTTTTTAATTTACATACATAT]

[+] EMBL BM635753             [CCGGAGAGAAAAGACCAGCAGAACACCACCACACCGGGTGTAGGAGACGTACAGGGGTGGCACACAACACGTACCTAGTCTTTCCCATAAAAAACACACACAAAAAACGAAAAAGAAGCAGCCCCATGTTTGAGCTCCACATTTGGAAGATCAATAATTTACCAAACAATTTCCCACCACCACTTCCCGCTGCTTACTCTCCCCGTCGCCCCCCTGTTTTCCCCCTTCGTTATAGTAAGAGTGACCGTGTGTGTGTGTGTGTGTGTGTGTGACTTTTTTTTAATTTACATACATAT]




>consensus_2078#1
CCGGAGAGAAAAGACCAGCAGAACACCACCACACCGGGTGTAGGAGACGTACAGGGGTGG
CACACAACACGTACCTAGTCTTTCCCATAAAAAACACACACAAAAAACGAAAAAGAAGCA
GCCCCATGTTTGAGCTCCACATTTGGAAGATCAATAATTTACCAAACAATTTCCCACCAC
CACTTCCCGCTGCTTACTCTCCCCGTCGCCCCCCTGTTTTCCCCCTTCGTTATAGTAAGA
GTGACCGTGTGTGTGTGTGTGTGTGTGTGTGACTTTTTTTTAATTTACATACATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2078#0      TTTTTTATGGGAAAGACTAGGTA--------CGTGTTGTGTGCCACCCCTGTACGTCTCC 52
consensus_2078#1      --CCGGAGAGAAAAGACCAGCAGAACACCACCACACCGGGTGTAGGAGACGTACAGGGGT 58
                            *  * ****** **           *     * ***        ****      

consensus_2078#0      TGCACCTGGTGTCTGC-TGGTCGTTTCNCTCCTTCCTTCCTACCACGATTGATTCGTTTA 111
consensus_2078#1      GGCACACAACACGTACCTAGTCTTTCCCATAAAAAACACACACAAAAAACGAAAAAGA-A 117
                       ****        * * * *** ** *  *        *  ** *  *  **       *

consensus_2078#0      ACAGTTTT-TATTTTAGATTTGAAACTG--ATTTGATTCNATCGTTTCATGGTTGTTGTT 168
consensus_2078#1      GCAGCCCCATGTTTGAGCTCCACATTTGGAAGATCAATAATTTACCAAACAATTTCCCAC 177
                       ***     * *** ** *    *  **  *  * * *   *      *   **      

consensus_2078#0      GTTTTTTTTTTGCGTGTGTGTTTTGTTGCTGTTAAAACATTAAAGCCAATACCAAAAGCA 228
consensus_2078#1      CACCACTTCCCGCTGCTTACTCTCCCCGTCGCCCCCCTGTTTTCCCCCTTCGTTATAGTA 237
                            **   **   *   * *    *  *        **    **  *    * ** *

consensus_2078#0      ATGCTAATCGAAATCGAATCTGGCAAAGGGCAAAGGGAACCGGTCCGAAACCGGCCGCCG 288
consensus_2078#1      AGAGTGACCG----TGTGTGTGTGTGTGTGTGTGTGTGACTTTTTTTTAATTTACATACA 293
                      *   * * **     *  * **     * *     *  **   *    **    *   * 

consensus_2078#0      TAGCCACCGGGTG 301
consensus_2078#1      TAT---------- 296
                      **