cluster # 2079

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Anopheles gambiae
cluster # 2079 cluster # 2079 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2079#0 length = 660 sequences # 1

consensus_2079#1 length = 371 sequences # 1

consensusID : consensus_2079#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 660
fasta sequence

                              [CCGGACCCGCTAAGATGAGAACAAGATAATTGAGGCAGATTTTCTTAGCTATCTTGGCACAGAAAGGATGACGAAGAGCGCGCCTCATCCAAGACTGGAGTTACGTAAGAACCGTGAATTTTAACGCAAATTTAGCGAATGAACAAGTAACAACTTCTACGTGTGTGGTGGCAAATGTTAGGCATCCTCGCATTTGTTTAAAACTGTCCCGTGGGTTTTGTATGAATATGAGTTAGATTGTCCTTTGTATGAAATATGCTAACTTTTTTTTGCATCAAAAGTTGCATAAACAATTTTTAAATTGGAATTAGCTGAACAGATCATGTTTAAACGTATTATAATTAATTATACGAAATACTTAGTAAAATATTTTCCTTTAATGGATATTCTGAGCAAAATTGGTTCCTTCTTGGTAATGCTTGAATTATATTTTTCAATATTCAAAAATGTTATTGGAGCATAAAGCATAGAGGTGAATCGTGTTTTGCTAAGCGGAAAAAATACCATTACAGTAGAAAAAGGATTTTTTGGCTCTAATTATGTTCGTTCATACTAACAGGATCGCGGATATATGCAACACATCCCGTTGAACTATTAAGCATGCAGTTGTACATTCATGAAGTGGTGGGATAGAACACCTAACTGAATGGGTTTTAGATG]

[+] EMBL BM651574             [CCGGACCCGCTAAGATGAGAACAAGATAATTGAGGCAGATTTTCTTAGCTATCTTGGCACAGAAAGGATGACGAAGAGCGCGCCTCATCCAAGACTGGAGTTACGTAAGAACCGTGAATTTTAACGCAAATTTAGCGAATGAACAAGTAACAACTTCTACGTGTGTGGTGGCAAATGTTAGGCATCCTCGCATTTGTTTAAAACTGTCCCGTGGGTTTTGTATGAATATGAGTTAGATTGTCCTTTGTATGAAATATGCTAACTTTTTTTTGCATCAAAAGTTGCATAAACAATTTTTAAATTGGAATTAGCTGAACAGATCATGTTTAAACGTATTATAATTAATTATACGAAATACTTAGTAAAATATTTTCCTTTAATGGATATTCTGAGCAAAATTGGTTCCTTCTTGGTAATGCTTGAATTATATTTTTCAATATTCAAAAATGTTATTGGAGCATAAAGCATAGAGGTGAATCGTGTTTTGCTAAGCGGAAAAAATACCATTACAGTAGAAAAAGGATTTTTTGGCTCTAATTATGTTCGTTCATACTAACAGGATCGCGGATATATGCAACACATCCCGTTGAACTATTAAGCATGCAGTTGTACATTCATGAAGTGGTGGGATAGAACACCTAACTGAATGGGTTTTAGATG]




>consensus_2079#0
CCGGACCCGCTAAGATGAGAACAAGATAATTGAGGCAGATTTTCTTAGCTATCTTGGCAC
AGAAAGGATGACGAAGAGCGCGCCTCATCCAAGACTGGAGTTACGTAAGAACCGTGAATT
TTAACGCAAATTTAGCGAATGAACAAGTAACAACTTCTACGTGTGTGGTGGCAAATGTTA
GGCATCCTCGCATTTGTTTAAAACTGTCCCGTGGGTTTTGTATGAATATGAGTTAGATTG
TCCTTTGTATGAAATATGCTAACTTTTTTTTGCATCAAAAGTTGCATAAACAATTTTTAA
ATTGGAATTAGCTGAACAGATCATGTTTAAACGTATTATAATTAATTATACGAAATACTT
AGTAAAATATTTTCCTTTAATGGATATTCTGAGCAAAATTGGTTCCTTCTTGGTAATGCT
TGAATTATATTTTTCAATATTCAAAAATGTTATTGGAGCATAAAGCATAGAGGTGAATCG
TGTTTTGCTAAGCGGAAAAAATACCATTACAGTAGAAAAAGGATTTTTTGGCTCTAATTA
TGTTCGTTCATACTAACAGGATCGCGGATATATGCAACACATCCCGTTGAACTATTAAGC
ATGCAGTTGTACATTCATGAAGTGGTGGGATAGAACACCTAACTGAATGGGTTTTAGATG

consensusID : consensus_2079#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence

                              [CCGCTTTTTTTTGCATCAAAAGTTGCATAAACAATTTTTAAATTGGAATTAGCTGAACAGATAATGTTCTTAGTAAAATATTTTCCTTTAATGGATATTCTGAGCAAAATTGGTTCCTTCTTGGTAATGCTTGAATTATATTTTTCAATATTCAAAAATGTTATTGGAGCATAAAGCATAGAGGTGAATCGTGTTTTGCTAAGCGGAAAAAATACCATTACAGTAGAAAAAGGATTTTTTGGCTCTAATTATGTTCGTTCATACTAACAGGATCGCGGATATATGCAACACATCCCGTTGAACTATTAAGCATGCAGTTGTACATTCATGAAGTGGTGGGATAGAACACCTAACTGAATGGGTTTTAGATG]

[+] EMBL BM635772             [CCGCTTTTTTTTGCATCAAAAGTTGCATAAACAATTTTTAAATTGGAATTAGCTGAACAGATAATGTTCTTAGTAAAATATTTTCCTTTAATGGATATTCTGAGCAAAATTGGTTCCTTCTTGGTAATGCTTGAATTATATTTTTCAATATTCAAAAATGTTATTGGAGCATAAAGCATAGAGGTGAATCGTGTTTTGCTAAGCGGAAAAAATACCATTACAGTAGAAAAAGGATTTTTTGGCTCTAATTATGTTCGTTCATACTAACAGGATCGCGGATATATGCAACACATCCCGTTGAACTATTAAGCATGCAGTTGTACATTCATGAAGTGGTGGGATAGAACACCTAACTGAATGGGTTTTAGATG]




>consensus_2079#1
CCGCTTTTTTTTGCATCAAAAGTTGCATAAACAATTTTTAAATTGGAATTAGCTGAACAG
ATAATGTTCTTAGTAAAATATTTTCCTTTAATGGATATTCTGAGCAAAATTGGTTCCTTC
TTGGTAATGCTTGAATTATATTTTTCAATATTCAAAAATGTTATTGGAGCATAAAGCATA
GAGGTGAATCGTGTTTTGCTAAGCGGAAAAAATACCATTACAGTAGAAAAAGGATTTTTT
GGCTCTAATTATGTTCGTTCATACTAACAGGATCGCGGATATATGCAACACATCCCGTTG
AACTATTAAGCATGCAGTTGTACATTCATGAAGTGGTGGGATAGAACACCTAACTGAATG
GGTTTTAGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2079#0      CCGGACCCGCTAAGATGAGAACAAGATAATTGAGGCAGATTTTCTTAGCTATCTTGGCAC 60
consensus_2079#1      ------------------------------------------------------------
                                                                                  

consensus_2079#0      AGAAAGGATGACGAAGAGCGCGCCTCATCCAAGACTGGAGTTACGTAAGAACCGTGAATT 120
consensus_2079#1      ------------------------------------------------------------
                                                                                  

consensus_2079#0      TTAACGCAAATTTAGCGAATGAACAAGTAACAACTTCTACGTGTGTGGTGGCAAATGTTA 180
consensus_2079#1      ------------------------------------------------------------
                                                                                  

consensus_2079#0      GGCATCCTCGCATTTGTTTAAAACTGTCCCGTGGGTTTTGTATGAATATGAGTTAGATTG 240
consensus_2079#1      ------------------------------------------------------------
                                                                                  

consensus_2079#0      TCCTTTGTATGAAATATGCTAACTTTTTTTTGCATCAAAAGTTGCATAAACAATTTTTAA 300
consensus_2079#1      -------------------CCGCTTTTTTTTGCATCAAAAGTTGCATAAACAATTTTTAA 41
                                            **************************************

consensus_2079#0      ATTGGAATTAGCTGAACAGATCATGTTTAAACGTATTATAATTAATTATACGAAATACTT 360
consensus_2079#1      ATTGGAATTAGCTGAACAGATAATGTT------------------------------CTT 71
                      ********************* *****                              ***

consensus_2079#0      AGTAAAATATTTTCCTTTAATGGATATTCTGAGCAAAATTGGTTCCTTCTTGGTAATGCT 420
consensus_2079#1      AGTAAAATATTTTCCTTTAATGGATATTCTGAGCAAAATTGGTTCCTTCTTGGTAATGCT 131
                      ************************************************************

consensus_2079#0      TGAATTATATTTTTCAATATTCAAAAATGTTATTGGAGCATAAAGCATAGAGGTGAATCG 480
consensus_2079#1      TGAATTATATTTTTCAATATTCAAAAATGTTATTGGAGCATAAAGCATAGAGGTGAATCG 191
                      ************************************************************

consensus_2079#0      TGTTTTGCTAAGCGGAAAAAATACCATTACAGTAGAAAAAGGATTTTTTGGCTCTAATTA 540
consensus_2079#1      TGTTTTGCTAAGCGGAAAAAATACCATTACAGTAGAAAAAGGATTTTTTGGCTCTAATTA 251
                      ************************************************************

consensus_2079#0      TGTTCGTTCATACTAACAGGATCGCGGATATATGCAACACATCCCGTTGAACTATTAAGC 600
consensus_2079#1      TGTTCGTTCATACTAACAGGATCGCGGATATATGCAACACATCCCGTTGAACTATTAAGC 311
                      ************************************************************

consensus_2079#0      ATGCAGTTGTACATTCATGAAGTGGTGGGATAGAACACCTAACTGAATGGGTTTTAGATG 660
consensus_2079#1      ATGCAGTTGTACATTCATGAAGTGGTGGGATAGAACACCTAACTGAATGGGTTTTAGATG 371
                      ************************************************************