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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2090#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence
[CCGGGAAAGCGAGCGCCAAAATGGGACCGACACGCCCCCGGCGCCGGAAGAGGTGCCGGAGGTGGCCGCCGGCCAGTACTTTGACCCGAACGCAACGATCGACCTGTCGGACGAGGACAACATGATACGGGCGCGGGCACTGTACGACTACCAGGCGGCGGACGATTCGGAGATCAGCTTCGATCCGGACGACATCATCACGCACATCGATCAGATCGACGAGGGCTGGTGGCAGGGCCTGGCCCCGGACGGCACGTACGGCCTGTTCCCGGCGAACTACGTCGAGCTCATTTAAAGCATTTTAATTCGCGTGTCTCTGCCACACGTGCTTAGCGCGCGCACTCCATGTCGTTATTATATATTGGTTATAGGCAAAAGCAAGCGCGCTCATCACACGAATAAGTATAGCAATCTGTTAACATAGTGCATATACGATCACGACTTAGATCAAACTGTAGCGCACAAACACACACACATCCCACACATGTACACACGTCGCACAGCTATATTTGCGGAGAGAGAGAGGAGATACGCCACTCGGGCAAGCGTTTAAATCGAAAACGTATCACGGAAAGCATTAGGGCAAGTGTTTTTGAATGTACTGTTTACGTCTTCTTCGACTCGTTTCTCGGTGTTTTTCCCAGGTTCCAGCGGCAACCAGTGATGATGCAGTCTAAAGTAGAGTAGTCAATGTGCGCA]
[+] EMBL BM638093 [CCGGGAAAGCGAGCGCCAAAATGGGACCGACACGCCCCCGGCGCCGGAAGAGGTGCCGGAGGTGGCCGCCGGCCAGTACTTTGACCCGAACGCAACGATCGACCTGTCGGACGAGGACAACATGATACGGGCGCGGGCACTGTACGACTACCAGGCGGCGGACGATTCGGAGATCAGCTTCGATCCGGACGACATCATCACGCACATCGATCAGATCGACGAGGGCTGGTGGCAGGGCCTGGCCCCGGACGGCACGTACGGCCTGTTCCCGGCGAACTACGTCGAGCTCATTTAAAGCATTTTAATTCGCGTGTCTCTGCCACACGTGCTTAGCGCGCGCACTCCATGTCGTTATTATATATTGGTTATAGGCAAAAGCAAGCGCGCTCATCACACGAATAAGTATAGCAATCTGTTAACATAGTGCATATACGATCACGACTTAGATCAAACTGTAGCGCACAAACACACACACATCCCACACATGTACACACGTCGCACAGCTATATTTGCGGAGAGAGAGAGGAGATACGCCACTCGGGCAAGCGTTTAAATCGAAAACGTATCACGGAAAGCATTAGGGCAAGTGTTTTTGAATGTACTGTTTACGTCTTCTTCGACTCGTTTCTCGGTGTTTTTCCCAGGTTCCAGCGGCAACCAGTGATGATGCAGTCTAAAGTAGAGTAGTCAATGTGCGCA]
consensusID : consensus_2090#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence
[CCGCACACACACACGAATAAGTATAGCAATCTGTTAACATAGTGCATATACGATCACGACTTAGATCAAACTGTAGCGCACAAACACACACACACACATCCCACACATGTACACACGTCGCACAGCTATATTTGCGAAGAGAGAGAGGAGATACGCCACTCGGGCAAGCGTTTAACGGGAAGCATTAGGGCAAGTGTTTTTGAATGTACTGTTTACGTCTTCTTCGACTCGTTTCTCGGTGTTTTTCCCAGGTTCCAGCGGCAACCAGTGATGATGCAGTCTAAAGTAGAGTAGTCAATGTGCGCAAAGCCGTGATTCCACGCCCGCGGAGAAAGCGATGTGTGATTATAATACAGTTCGATCGAACGATCGCGCACCCTCTCCATTTTACGCCCGTTTAGTCCGGGTGTACGCCTCCCGGTTCTAGACTAATAATAGATAAGCGTTTTAACTATTTAATTATACACACTTTCCCGCCACACGTACATCCACATCTACACTGACAACCCTATAACGAATGAACCGGGAATGAAGA]
[+] EMBL BM585327 [CCGCACACACACACGAATAAGTATAGCAATCTGTTAACATAGTGCATATACGATCACGACTTAGATCAAACTGTAGCGCACAAACACACACACACACATCCCACACATGTACACACGTCGCACAGCTATATTTGCGAAGAGAGAGAGGAGATACGCCACTCGGGCAAGCGTTTAACGGGAAGCATTAGGGCAAGTGTTTTTGAATGTACTGTTTACGTCTTCTTCGACTCGTTTCTCGGTGTTTTTCCCAGGTTCCAGCGGCAACCAGTGATGATGCAGTCTAAAGTAGAGTAGTCAATGTGCGCAAAGCCGTGATTCCACGCCCGCGGAGAAAGCGATGTGTGATTATAATACAGTTCGATCGAACGATCGCGCACCCTCTCCATTTTACGCCCGTTTAGTCCGGGTGTACGCCTCCCGGTTCTAGACTAATAATAGATAAGCGTTTTAACTATTTAATTATACACACTTTCCCGCCACACGTACATCCACATCTACACTGACAACCCTATAACGAATGAACCGGGAATGAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2090#0 CCGGGAAAGCGAGCGCCAAAATGGGACCGACACGCCCCCGGCGCCGGAAGAGGTGCCGGA 60
consensus_2090#1 ------------------------------------------------------------
consensus_2090#0 GGTGGCCGCCGGCCAGTACTTTGACCCGAACGCAACGATCGACCTGTCGGACGAGGACAA 120
consensus_2090#1 ------------------------------------------------------------
consensus_2090#0 CATGATACGGGCGCGGGCACTGTACGACTACCAGGCGGCGGACGATTCGGAGATCAGCTT 180
consensus_2090#1 ------------------------------------------------------------
consensus_2090#0 CGATCCGGACGACATCATCACGCACATCGATCAGATCGACGAGGGCTGGTGGCAGGGCCT 240
consensus_2090#1 ------------------------------------------------------------
consensus_2090#0 GGCCCCGGACGGCACGTACGGCCTGTTCCCGGCGAACTACGTCGAGCTCATTTAAAGCAT 300
consensus_2090#1 ------------------------------------------------------------
consensus_2090#0 TTTAATTCGCGTGTCTCTGCCACACGTGCTTAGCGCGCGCACTCCATGTCGTTATTATAT 360
consensus_2090#1 ------------------------------------------------------------
consensus_2090#0 ATTGGTTATAGGCAAAAGCAAGCGCGCTCATCACACGAATAAGTATAGCAATCTGTTAAC 420
consensus_2090#1 ---------------------CCGCACACA-CACACGAATAAGTATAGCAATCTGTTAAC 38
*** * ** *****************************
consensus_2090#0 ATAGTGCATATACGATCACGACTTAGATCAAACTGTAGCGCACAAACACACACACA---- 476
consensus_2090#1 ATAGTGCATATACGATCACGACTTAGATCAAACTGTAGCGCACAAACACACACACACACA 98
********************************************************
consensus_2090#0 TCCCACACATGTACACACGTCGCACAGCTATATTTGCGGAGAGAGAGAGGAGATACGCCA 536
consensus_2090#1 TCCCACACATGTACACACGTCGCACAGCTATATTTGCGAAGAGAGAGAGGAGATACGCCA 158
************************************** *********************
consensus_2090#0 CTCGGGCAAGCGTTTAAATCGAAAACGTATCACGGAAAGCATTAGGGCAAGTGTTTTTGA 596
consensus_2090#1 CTCGGGCAAGCGTTTA---------------ACGGGAAGCATTAGGGCAAGTGTTTTTGA 203
**************** **** ************************
consensus_2090#0 ATGTACTGTTTACGTCTTCTTCGACTCGTTTCTCGGTGTTTTTCCCAGGTTCCAGCGGCA 656
consensus_2090#1 ATGTACTGTTTACGTCTTCTTCGACTCGTTTCTCGGTGTTTTTCCCAGGTTCCAGCGGCA 263
************************************************************
consensus_2090#0 ACCAGTGATGATGCAGTCTAAAGTAGAGTAGTCAATGTGCGCA----------------- 699
consensus_2090#1 ACCAGTGATGATGCAGTCTAAAGTAGAGTAGTCAATGTGCGCAAAGCCGTGATTCCACGC 323
*******************************************
consensus_2090#0 ------------------------------------------------------------
consensus_2090#1 CCGCGGAGAAAGCGATGTGTGATTATAATACAGTTCGATCGAACGATCGCGCACCCTCTC 383
consensus_2090#0 ------------------------------------------------------------
consensus_2090#1 CATTTTACGCCCGTTTAGTCCGGGTGTACGCCTCCCGGTTCTAGACTAATAATAGATAAG 443
consensus_2090#0 ------------------------------------------------------------
consensus_2090#1 CGTTTTAACTATTTAATTATACACACTTTCCCGCCACACGTACATCCACATCTACACTGA 503
consensus_2090#0 --------------------------------
consensus_2090#1 CAACCCTATAACGAATGAACCGGGAATGAAGA 535
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||