cluster # 21

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Anopheles gambiae
cluster # 21 cluster # 21 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_21#0 length = 669 sequences # 1

consensus_21#1 length = 592 sequences # 1

consensusID : consensus_21#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [GGATTGGTCAAACAGGGAACGTCGGGTGACAAACGTCCAATGTTGCCACTATATGGTAAGCGCAATAAGCTTCGAAACACTTTTGGCATCCGCGAATCTAGCATAAAAGCGGAGAAAGATGATGATGCGGATGCAGGGGAATGTTCCACTTCCATAACAAAGGAAACAAAATCGATTCAAAAGACAGCTCCGAATAGTGAAGACATTCCCTCCGGAAGCAAGTCCGTTTCGCGGGGAGAAGTGCCAGGTGGACCGAGCAACTATAGAAATGAACGGAAACGGTCATCTTTGGTAGCGCAAGCTGACGATCCAAGTAAAGCAGATCCTATAACCGACAGCACTTCTGCCGGCGAGAGCAGTAGTAGCAATAAGAAGAAACGACCGAGACAACGGATCCGAGATGGTAAATTTCGCGAAAACGTCGATTTTGACGATGCTGTCGAACTAGCGAGCGATGATAAAAATGTCGAGTGGGTGCCACCGTCGGGCCAGACTGGTGATGGCCGAACTTCGCTGAATGAAAAGTTTGGATACTAGTATGAATGTTTCCATACTAAAGGATAATTCGTTTAAATGCTTATGCGTATTAGTTGCTTATGTGCTCAAGTGACAGTCAATAAAAAAGTACCATGAATTTCAGCAGTGTAGAGAATAATAGTAATAATATAA]

[+] EMBL BX627170             [GGATTGGTCAAACAGGGAACGTCGGGTGACAAACGTCCAATGTTGCCACTATATGGTAAGCGCAATAAGCTTCGAAACACTTTTGGCATCCGCGAATCTAGCATAAAAGCGGAGAAAGATGATGATGCGGATGCAGGGGAATGTTCCACTTCCATAACAAAGGAAACAAAATCGATTCAAAAGACAGCTCCGAATAGTGAAGACATTCCCTCCGGAAGCAAGTCCGTTTCGCGGGGAGAAGTGCCAGGTGGACCGAGCAACTATAGAAATGAACGGAAACGGTCATCTTTGGTAGCGCAAGCTGACGATCCAAGTAAAGCAGATCCTATAACCGACAGCACTTCTGCCGGCGAGAGCAGTAGTAGCAATAAGAAGAAACGACCGAGACAACGGATCCGAGATGGTAAATTTCGCGAAAACGTCGATTTTGACGATGCTGTCGAACTAGCGAGCGATGATAAAAATGTCGAGTGGGTGCCACCGTCGGGCCAGACTGGTGATGGCCGAACTTCGCTGAATGAAAAGTTTGGATACTAGTATGAATGTTTCCATACTAAAGGATAATTCGTTTAAATGCTTATGCGTATTAGTTGCTTATGTGCTCAAGTGACAGTCAATAAAAAAGTACCATGAATTTCAGCAGTGTAGAGAATAATAGTAATAATATAA]




>consensus_21#0
GGATTGGTCAAACAGGGAACGTCGGGTGACAAACGTCCAATGTTGCCACTATATGGTAAG
CGCAATAAGCTTCGAAACACTTTTGGCATCCGCGAATCTAGCATAAAAGCGGAGAAAGAT
GATGATGCGGATGCAGGGGAATGTTCCACTTCCATAACAAAGGAAACAAAATCGATTCAA
AAGACAGCTCCGAATAGTGAAGACATTCCCTCCGGAAGCAAGTCCGTTTCGCGGGGAGAA
GTGCCAGGTGGACCGAGCAACTATAGAAATGAACGGAAACGGTCATCTTTGGTAGCGCAA
GCTGACGATCCAAGTAAAGCAGATCCTATAACCGACAGCACTTCTGCCGGCGAGAGCAGT
AGTAGCAATAAGAAGAAACGACCGAGACAACGGATCCGAGATGGTAAATTTCGCGAAAAC
GTCGATTTTGACGATGCTGTCGAACTAGCGAGCGATGATAAAAATGTCGAGTGGGTGCCA
CCGTCGGGCCAGACTGGTGATGGCCGAACTTCGCTGAATGAAAAGTTTGGATACTAGTAT
GAATGTTTCCATACTAAAGGATAATTCGTTTAAATGCTTATGCGTATTAGTTGCTTATGT
GCTCAAGTGACAGTCAATAAAAAAGTACCATGAATTTCAGCAGTGTAGAGAATAATAGTA
ATAATATAA

consensusID : consensus_21#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 592
fasta sequence

                              [TAGATCGGCAGGGATTGCTGCGTCAAGCTAACCATGAGCCGCGACGACGATTCCAAAAACAATCGGATTCGGACGATGACGACGATTTTCTTGACCGGACGGGCGCAGTCGAAAAACGACGGCAGCGTAAAGAAGCTGCCAAAAATCCACAAACGCACACATACGCTGATTTGATTCACAAAGAGGCACAAATCCTCGAACGTTTGGAGACGAATTGAATCGAAGATACAAAACGCGCGGCTCATCAAACAGGAAACGCATCTGCCAGAGAATGCCGATGATGTGGCCAAATTTTTGGATAACCTGACTAAAGACAACTATAAAAATGAACGGAAACGGTCATCTTTGGTAGCGCAAGCTGACGAACCAAGTAAAGCAGATACTATAACCGACAGCACTTCTGCCGGCGAGAGCAGTAGTAGCAATAAGAAGAAACGACCGAGACAACGGATCCGAGATGGTAAATTTCGCGAAAACGTCGATTTTGACGATGCTGTCGAACTAGCGAGCGATGATAAAAATGTCGAGTGGGTGCCACCGTCGGGCCAGACTGGTGATGGCCGAACTTCACTGAATGAAAAGTTTGGATACT]

[-] EMBL CNS09H7K             [TAGATCGGCAGGGATTGCTGCGTCAAGCTAACCATGAGCCGCGACGACGATTCCAAAAACAATCGGATTCGGACGATGACGACGATTTTCTTGACCGGACGGGCGCAGTCGAAAAACGACGGCAGCGTAAAGAAGCTGCCAAAAATCCACAAACGCACACATACGCTGATTTGATTCACAAAGAGGCACAAATCCTCGAACGTTTGGAGACGAATTGAATCGAAGATACAAAACGCGCGGCTCATCAAACAGGAAACGCATCTGCCAGAGAATGCCGATGATGTGGCCAAATTTTTGGATAACCTGACTAAAGACAACTATAAAAATGAACGGAAACGGTCATCTTTGGTAGCGCAAGCTGACGAACCAAGTAAAGCAGATACTATAACCGACAGCACTTCTGCCGGCGAGAGCAGTAGTAGCAATAAGAAGAAACGACCGAGACAACGGATCCGAGATGGTAAATTTCGCGAAAACGTCGATTTTGACGATGCTGTCGAACTAGCGAGCGATGATAAAAATGTCGAGTGGGTGCCACCGTCGGGCCAGACTGGTGATGGCCGAACTTCACTGAATGAAAAGTTTGGATACT]




>consensus_21#1
TAGATCGGCAGGGATTGCTGCGTCAAGCTAACCATGAGCCGCGACGACGATTCCAAAAAC
AATCGGATTCGGACGATGACGACGATTTTCTTGACCGGACGGGCGCAGTCGAAAAACGAC
GGCAGCGTAAAGAAGCTGCCAAAAATCCACAAACGCACACATACGCTGATTTGATTCACA
AAGAGGCACAAATCCTCGAACGTTTGGAGACGAATTGAATCGAAGATACAAAACGCGCGG
CTCATCAAACAGGAAACGCATCTGCCAGAGAATGCCGATGATGTGGCCAAATTTTTGGAT
AACCTGACTAAAGACAACTATAAAAATGAACGGAAACGGTCATCTTTGGTAGCGCAAGCT
GACGAACCAAGTAAAGCAGATACTATAACCGACAGCACTTCTGCCGGCGAGAGCAGTAGT
AGCAATAAGAAGAAACGACCGAGACAACGGATCCGAGATGGTAAATTTCGCGAAAACGTC
GATTTTGACGATGCTGTCGAACTAGCGAGCGATGATAAAAATGTCGAGTGGGTGCCACCG
TCGGGCCAGACTGGTGATGGCCGAACTTCACTGAATGAAAAGTTTGGATACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_21#0      -----------------------------------------------GGATTGGTCAAAC 13
consensus_21#1      TAGATCGGCAGGGATTGCTGCGTCAAGCTAACCATGAGCCGCGACGACGATTCCAAAAAC 60
                                                                    ****    ****

consensus_21#0      AGGGAACGTCGGGTGACAAACGTCCAATGTTGCCACTATATGGTAAGCG-CAATAAGCTT 72
consensus_21#1      AATCGGATTCGGACGATGA-CGACGATTTTCTTGACCGGACGGGCGCAGTCGAAAAACGA 119
                    *       ****  **  * ** * * * *    **   * **     * * * ** *  

consensus_21#0      CGAAACACTTTTGGCATCCGCGAATCTAGCATAAAAGCGGAGAAAGATGATGATGCGGAT 132
consensus_21#1      CGGCA-GCGTAAAGAAGCTGCCAA--AAATCCACAAACGCACACATACGCTGAT-TTGAT 175
                    **  *  * *   * * * ** **   *    * ** ** * * * * * ****   ***

consensus_21#0      GCAGGGGAATGTTCCACTTCCATAACAAA-GGAAACAAAATCGATTCAAAAGACA----- 186
consensus_21#1      TCACAAAGAGGCACAAATCCTCGAACGTTTGGAGACGAATTGAATCGAAGATACAAAACG 235
                     **     * *  * * * *   ***    *** ** ** *  **  ** * ***     

consensus_21#0      ----GCTCCGAATAGTGAAGACATTCCCTCCGGAAGCAAGTCCGTTTCGCGGGGAGAAGT 242
consensus_21#1      CGCGGCTCATCAAACAGGAAACGCATCTGCCAGAGA-ATGCCGATGATGTGGCCAAATTT 294
                        ****   * *  * * **    *  ** **   * * *  *   * **  * *  *

consensus_21#0      ---GCCAGGTGGACCGAG--CAACTATAGAAATGAACGGAAACGGTCATCTTTGGTAGCG 297
consensus_21#1      TTGGATAACCTGACTAAAGACAACTATAAAAATGAACGGAAACGGTCATCTTTGGTAGCG 354
                       *  *    ***  *   ******** *******************************

consensus_21#0      CAAGCTGACGATCCAAGTAAAGCAGATCCTATAACCGACAGCACTTCTGCCGGCGAGAGC 357
consensus_21#1      CAAGCTGACGAACCAAGTAAAGCAGATACTATAACCGACAGCACTTCTGCCGGCGAGAGC 414
                    *********** *************** ********************************

consensus_21#0      AGTAGTAGCAATAAGAAGAAACGACCGAGACAACGGATCCGAGATGGTAAATTTCGCGAA 417
consensus_21#1      AGTAGTAGCAATAAGAAGAAACGACCGAGACAACGGATCCGAGATGGTAAATTTCGCGAA 474
                    ************************************************************

consensus_21#0      AACGTCGATTTTGACGATGCTGTCGAACTAGCGAGCGATGATAAAAATGTCGAGTGGGTG 477
consensus_21#1      AACGTCGATTTTGACGATGCTGTCGAACTAGCGAGCGATGATAAAAATGTCGAGTGGGTG 534
                    ************************************************************

consensus_21#0      CCACCGTCGGGCCAGACTGGTGATGGCCGAACTTCGCTGAATGAAAAGTTTGGATACTAG 537
consensus_21#1      CCACCGTCGGGCCAGACTGGTGATGGCCGAACTTCACTGAATGAAAAGTTTGGATACT-- 592
                    *********************************** **********************  

consensus_21#0      TATGAATGTTTCCATACTAAAGGATAATTCGTTTAAATGCTTATGCGTATTAGTTGCTTA 597
consensus_21#1      ------------------------------------------------------------
                                                                                

consensus_21#0      TGTGCTCAAGTGACAGTCAATAAAAAAGTACCATGAATTTCAGCAGTGTAGAGAATAATA 657
consensus_21#1      ------------------------------------------------------------
                                                                                

consensus_21#0      GTAATAATATAA 669
consensus_21#1      ------------