cluster # 2106

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Anopheles gambiae
cluster # 2106 cluster # 2106 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2106#0 length = 719 sequences # 1

consensus_2106#1 length = 711 sequences # 1

consensusID : consensus_2106#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 719
fasta sequence

                              [CAAGAATCGGCACGATGGGTTCACCAGCCGCGAAGCGAACCTGAAGGATGTGTGGGAACGACAGCAGATCTTTGACCGTTCCGTGCGTGCGTTTACAGCCACGCTCGGGCCGGCCGGTGGAAAACGGGGCTACCAGGGCATTACTGGCCACGTTTCGAACGGACTGGCCTGGTACATCAATGGGTTCCTCGTGCCGGAACTGTGGCTCCGCCGTGGCCTTACCTACTCGTTCCTCGTGCGCGGTGGAAACAATCCACACTCGCCCGAGTTCTACCATCCGCTCGTCATTACGGACGAACCGCACGGTGGATACGATCGGCTTTCCGACGCACGGCAGAGCGAAATTCGCGTGCTGGCCGGCGTTGAGTTTACGCGCCGCGGTCGGCCGAAACCGATCGCCGCCGGACCACTGTGCCTGGCCCGTCACCCAGAAGGACAGGATCGACGGTTGGATGACAATTTTGCAACGTTCAAAAAGTTCAACCGCACACTGAAATGGACCTGTGATTCCGGCGATCCGGCAGTGTTGGAAATAACGCCCAAACCAGCTGGCCGGGACGCTGGTGTACTACAACAGCTTTCACCCACGCCAAACATGGGCTGGAAGATACAACATTCGTCCNATAGCTACAGGACAGTCGGGGCGTAGGTTCACCGCTTCCGGTTTACAGGAAGCTTTAATCACTCGAGTCCNGAGTANCTCTAATTGCGAAGAAGAC]

[+] EMBL BX469795             [CAAGAATCGGCACGATGGGTTCACCAGCCGCGAAGCGAACCTGAAGGATGTGTGGGAACGACAGCAGATCTTTGACCGTTCCGTGCGTGCGTTTACAGCCACGCTCGGGCCGGCCGGTGGAAAACGGGGCTACCAGGGCATTACTGGCCACGTTTCGAACGGACTGGCCTGGTACATCAATGGGTTCCTCGTGCCGGAACTGTGGCTCCGCCGTGGCCTTACCTACTCGTTCCTCGTGCGCGGTGGAAACAATCCACACTCGCCCGAGTTCTACCATCCGCTCGTCATTACGGACGAACCGCACGGTGGATACGATCGGCTTTCCGACGCACGGCAGAGCGAAATTCGCGTGCTGGCCGGCGTTGAGTTTACGCGCCGCGGTCGGCCGAAACCGATCGCCGCCGGACCACTGTGCCTGGCCCGTCACCCAGAAGGACAGGATCGACGGTTGGATGACAATTTTGCAACGTTCAAAAAGTTCAACCGCACACTGAAATGGACCTGTGATTCCGGCGATCCGGCAGTGTTGGAAATAACGCCCAAACCAGCTGGCCGGGACGCTGGTGTACTACAACAGCTTTCACCCACGCCAAACATGGGCTGGAAGATACAACATTCGTCCNATAGCTACAGGACAGTCGGGGCGTAGGTTCACCGCTTCCGGTTTACAGGAAGCTTTAATCACTCGAGTCCNGAGTANCTCTAATTGCGAAGAAGAC]




>consensus_2106#0
CAAGAATCGGCACGATGGGTTCACCAGCCGCGAAGCGAACCTGAAGGATGTGTGGGAACG
ACAGCAGATCTTTGACCGTTCCGTGCGTGCGTTTACAGCCACGCTCGGGCCGGCCGGTGG
AAAACGGGGCTACCAGGGCATTACTGGCCACGTTTCGAACGGACTGGCCTGGTACATCAA
TGGGTTCCTCGTGCCGGAACTGTGGCTCCGCCGTGGCCTTACCTACTCGTTCCTCGTGCG
CGGTGGAAACAATCCACACTCGCCCGAGTTCTACCATCCGCTCGTCATTACGGACGAACC
GCACGGTGGATACGATCGGCTTTCCGACGCACGGCAGAGCGAAATTCGCGTGCTGGCCGG
CGTTGAGTTTACGCGCCGCGGTCGGCCGAAACCGATCGCCGCCGGACCACTGTGCCTGGC
CCGTCACCCAGAAGGACAGGATCGACGGTTGGATGACAATTTTGCAACGTTCAAAAAGTT
CAACCGCACACTGAAATGGACCTGTGATTCCGGCGATCCGGCAGTGTTGGAAATAACGCC
CAAACCAGCTGGCCGGGACGCTGGTGTACTACAACAGCTTTCACCCACGCCAAACATGGG
CTGGAAGATACAACATTCGTCCNATAGCTACAGGACAGTCGGGGCGTAGGTTCACCGCTT
CCGGTTTACAGGAAGCTTTAATCACTCGAGTCCNGAGTANCTCTAATTGCGAAGAAGAC

consensusID : consensus_2106#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 711
fasta sequence

                              [GCGGGCAACGTGCAGCAGGACGAGTACATGTCGTTCGGGCTGTCCGGCTCGGACAGCCGTAGCCAAATGCTTGGGGCCGATGTGGTCGTGGCCTTCATCGATGGGCATCGTGGATATGCCGTGGATTACAACATCACCTCGCTCGCACCGTGCGTGCAGGTGCTCGGCCAAAACAAGGGCGTTTGTCGGGACGATGTGGTCGGCGGATTGGACAGCTACCAGCTGCACACGTACAGCCGGGAGAACGACATCAACACGATTACCTTCCGCCGCACACTGATTTCTTCCGACTCGGGCGACAAAGAGTTCTTGCTGGACCGTCCGATGTACGTGATATGGGCGATGGGTCGTCTAGATTCGAACAACGAACCGACCTACCACGACGTCTACCCCAAGCGCAATGTGCAGATCCACTTCAACACCTCCGAGCCGGTCAACGATTGTTTCAGTTTCACCAGCCGCGAAGCAAACCTGAAGGATGTGTGGGAACGACAGCAGATCTTTGACCGTTCCGTGCGTGCGTTTACAGCCACGCTCGGGCCGGCCGGTGGAAAGCGGGGCTACCAGGGCATTACTGGGCACGTTTCGAACGGACTGGCCTGGTACATCAATGGGTTCCTCGTGCCGGAACTGTGGCTCCGCCGTGGCCTTACCTACTCGTTCCTCGTGCGCGGNGGAAACAATCCACACTCGCCCGAGTTCTACCATCCG]

[+] EMBL BX627682             [GCGGGCAACGTGCAGCAGGACGAGTACATGTCGTTCGGGCTGTCCGGCTCGGACAGCCGTAGCCAAATGCTTGGGGCCGATGTGGTCGTGGCCTTCATCGATGGGCATCGTGGATATGCCGTGGATTACAACATCACCTCGCTCGCACCGTGCGTGCAGGTGCTCGGCCAAAACAAGGGCGTTTGTCGGGACGATGTGGTCGGCGGATTGGACAGCTACCAGCTGCACACGTACAGCCGGGAGAACGACATCAACACGATTACCTTCCGCCGCACACTGATTTCTTCCGACTCGGGCGACAAAGAGTTCTTGCTGGACCGTCCGATGTACGTGATATGGGCGATGGGTCGTCTAGATTCGAACAACGAACCGACCTACCACGACGTCTACCCCAAGCGCAATGTGCAGATCCACTTCAACACCTCCGAGCCGGTCAACGATTGTTTCAGTTTCACCAGCCGCGAAGCAAACCTGAAGGATGTGTGGGAACGACAGCAGATCTTTGACCGTTCCGTGCGTGCGTTTACAGCCACGCTCGGGCCGGCCGGTGGAAAGCGGGGCTACCAGGGCATTACTGGGCACGTTTCGAACGGACTGGCCTGGTACATCAATGGGTTCCTCGTGCCGGAACTGTGGCTCCGCCGTGGCCTTACCTACTCGTTCCTCGTGCGCGGNGGAAACAATCCACACTCGCCCGAGTTCTACCATCCG]




>consensus_2106#1
GCGGGCAACGTGCAGCAGGACGAGTACATGTCGTTCGGGCTGTCCGGCTCGGACAGCCGT
AGCCAAATGCTTGGGGCCGATGTGGTCGTGGCCTTCATCGATGGGCATCGTGGATATGCC
GTGGATTACAACATCACCTCGCTCGCACCGTGCGTGCAGGTGCTCGGCCAAAACAAGGGC
GTTTGTCGGGACGATGTGGTCGGCGGATTGGACAGCTACCAGCTGCACACGTACAGCCGG
GAGAACGACATCAACACGATTACCTTCCGCCGCACACTGATTTCTTCCGACTCGGGCGAC
AAAGAGTTCTTGCTGGACCGTCCGATGTACGTGATATGGGCGATGGGTCGTCTAGATTCG
AACAACGAACCGACCTACCACGACGTCTACCCCAAGCGCAATGTGCAGATCCACTTCAAC
ACCTCCGAGCCGGTCAACGATTGTTTCAGTTTCACCAGCCGCGAAGCAAACCTGAAGGAT
GTGTGGGAACGACAGCAGATCTTTGACCGTTCCGTGCGTGCGTTTACAGCCACGCTCGGG
CCGGCCGGTGGAAAGCGGGGCTACCAGGGCATTACTGGGCACGTTTCGAACGGACTGGCC
TGGTACATCAATGGGTTCCTCGTGCCGGAACTGTGGCTCCGCCGTGGCCTTACCTACTCG
TTCCTCGTGCGCGGNGGAAACAATCCACACTCGCCCGAGTTCTACCATCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2106#0      CAAGAATCGGCACGATGGGTTCACCAGC-CGCGAAGCGAACCTGAAGGATGTGTGGGAAC 59
consensus_2106#1      ---------GCGGGCAACGTGCAGCAGGACGAGTACATGTCGTTCGGGCTGTCCGGCTCG 51
                               **  *    ** ** ***  ** * *     * *   ** ***  **    

consensus_2106#0      GACAGCAGATCTTTGACCGTTCCGTGC--GTGCGTTTACAGCCACGCTCGGGCCGGCCGG 117
consensus_2106#1      GACAGCCG-TAGCCAAATGCTTGGGGCCGATGTGGTCGTGGCCTTCATCGATGGGCATCG 110
                      ****** * *     *  * *  * **   ** * *    ***    ***    *    *

consensus_2106#0      TGGAAAACGGGGCTACCAGGGCATTACTGGCCACGTTTCGAACGGACTGGCCTGGTACAT 177
consensus_2106#1      TGGATATGCCGTGGATTACAACATCACCTCGCTCGCACCGTGCGTGCAGGTGCTCGGCCA 170
                      **** *    *   *  *   *** **    * **   **  **  * **       *  

consensus_2106#0      CAATGGGTTCCTCGTGCCGGAACTGTG-GCTCCGCCGTGGCCTTACCTACTCGTTCCTCG 236
consensus_2106#1      AAACAAGGGCGTT-TGTCGGGACGATGTGGTCGGCGGATTGGACAGCTACCAGCTGCACA 229
                       **   *  * *  ** *** **  ** * ** ** *       * ****  * * * * 

consensus_2106#0      TGCGCGGT---GGAAACAATCCACACTCGCCCGAGTTCTACCATCCGCTCGTCATTACGG 293
consensus_2106#1      CGTACAGCCGGGAGAACGACATCAACACGATTACCTTCCGCCGCACACTGATTTCTTCCG 289
                       *  * *    *  *** *     ** **      ***  **   * **  *   * * *

consensus_2106#0      AC--GAACCGCACGGTGGATACGATCGGCTTTCCGACGCACGGCAGAGCGAAATTCGCGT 351
consensus_2106#1      ACTCGGGCGACAAAGAGTTCTTGCTGGACCGTCCGATGTACGTGATATGGGCG---ATGG 346
                      **  *  *  **  * *     * * * *  ***** * ***  * *  *        * 

consensus_2106#0      GCTGGCCGGCGTTGAGTTTACGCGCCGCGGTCGGCCGAAACCGATCGCCGCCGGACCACT 411
consensus_2106#1      GTCGTCTAGATTCGAACA-ACGAACCG--ACCTACCACGAC-GTCTACCCCAAGCGCAAT 402
                      *  * *  *  * **    ***  ***    *  **   ** *    ** *  *  ** *

consensus_2106#0      GTGCCTGGCC-CGTCACCCAGAAGGACAGGATCGACGGTTGGATGACAATTTTGCAACGT 470
consensus_2106#1      GTGCAGATCCACTTCAACACCTCCGAGCCGGTCAACGATTGTTT--CAGTTTCACCAGCC 460
                      ****    ** * *** *      **   * ** *** ***  *  ** ***  * *   

consensus_2106#0      TCAAA---AAGTTCAACCGCACACTGAAATGGACCTGTGATTCCGGCGATCCGGCA---G 524
consensus_2106#1      GCGAAGCAAACCTGAAGGATGTGTGGGAACGACAGCAGATCTTTGACCGTTCCGTGCGTG 520
                       * **   **  * **         * ** *          *  * *  * * *     *

consensus_2106#0      TGTTGGAAATAACGCCCAAACCAGCTGGCCGGGACGCTGGTGTACTACAACAGCTTTCAC 584
consensus_2106#1      CGTTTACAGCCACGCTCGGGCCGGCCGGT-GGAAAGCGGGGCTACCAGGGCA-TTACTGG 578
                       ***   *   **** *   ** ** **  ** * ** **  *** *   **  *     

consensus_2106#0      CCACGCCAAACATGGGCTGGAA-GATACAACA--------TTCGTCCNATAGCTACAGGA 635
consensus_2106#1      GCACGTTTCGAACGGACTGGCCTGGTACATCAATGGGTTCCTCGTGCCGGAACTGTGGCT 638
                       ****      * ** ****   * **** **         **** *   * **   *  

consensus_2106#0      CAGTCGGGGCGTAGGTTCACCGCTTCCGGTTTACAGGAAGCTTTAATCACTCGAGTCCNG 695
consensus_2106#1      CCGCCGTGGCCTTACCTACTCGTTCCTCGTGCGCGGNGGAAACAATCCACACTCG-CCCG 697
                      * * ** *** *    *   ** * *  **   * *        *  *** *  * ** *

consensus_2106#0      AGTANCTCTAATTGCGAAGAAGAC 719
consensus_2106#1      AGTTCTACCATCCG---------- 711
                      ***    * *   *