cluster # 2108

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Anopheles gambiae
cluster # 2108 cluster # 2108 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2108#0 length = 544 sequences # 1

consensus_2108#1 length = 521 sequences # 1

consensusID : consensus_2108#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 544
fasta sequence

                              [CCGGTGCGTATAGCTTAATCATTTTCGGGGGGATGAAAGCAAACCAGAGAATGGTTGAGGGTGAATGTGCAATTGTAAGCAGAAGGCTAGAGCAGAACCAAGATAGTGCAGCAGCAGCAGCAGCAAGATTGATATTCACGACGACGATGCACGATAAGCGAGTAAACCGTCTAGGAAAGGGTTTTTTTTGTTTCTTTGTTTTGGTTTGCGTTGATCGTGTGTGTGCGTGGTTTTTTTTACATTATACTCTCCGTTTTGTTACGGCAGGTTTTTGTTTTGTTTTTGTTTTGTTAGATTTCCTTACGGTACGGTTATGGGGCGGGTGACAAAGTGGTGACAGGGCGCTAGGCTTTTCTTCACGATCGTCGCCGGTTGCTCTCGCGATCGGTTGCGATTTGACTGCAAAACAAACAATACTGGTTGGTACTGTGCTTTCTGTTTTGGGGTTTCTTTCAATGAAAATGTTCAACGAATGACTGGAGTAGGCAAGAAAAAAAAAACAAACACGCCCGTGTTTAAAGCTATATAAGTATAATGATGCTAG]

[+] EMBL BM618275             [CCGGTGCGTATAGCTTAATCATTTTCGGGGGGATGAAAGCAAACCAGAGAATGGTTGAGGGTGAATGTGCAATTGTAAGCAGAAGGCTAGAGCAGAACCAAGATAGTGCAGCAGCAGCAGCAGCAAGATTGATATTCACGACGACGATGCACGATAAGCGAGTAAACCGTCTAGGAAAGGGTTTTTTTTGTTTCTTTGTTTTGGTTTGCGTTGATCGTGTGTGTGCGTGGTTTTTTTTACATTATACTCTCCGTTTTGTTACGGCAGGTTTTTGTTTTGTTTTTGTTTTGTTAGATTTCCTTACGGTACGGTTATGGGGCGGGTGACAAAGTGGTGACAGGGCGCTAGGCTTTTCTTCACGATCGTCGCCGGTTGCTCTCGCGATCGGTTGCGATTTGACTGCAAAACAAACAATACTGGTTGGTACTGTGCTTTCTGTTTTGGGGTTTCTTTCAATGAAAATGTTCAACGAATGACTGGAGTAGGCAAGAAAAAAAAAACAAACACGCCCGTGTTTAAAGCTATATAAGTATAATGATGCTAG]




>consensus_2108#0
CCGGTGCGTATAGCTTAATCATTTTCGGGGGGATGAAAGCAAACCAGAGAATGGTTGAGG
GTGAATGTGCAATTGTAAGCAGAAGGCTAGAGCAGAACCAAGATAGTGCAGCAGCAGCAG
CAGCAAGATTGATATTCACGACGACGATGCACGATAAGCGAGTAAACCGTCTAGGAAAGG
GTTTTTTTTGTTTCTTTGTTTTGGTTTGCGTTGATCGTGTGTGTGCGTGGTTTTTTTTAC
ATTATACTCTCCGTTTTGTTACGGCAGGTTTTTGTTTTGTTTTTGTTTTGTTAGATTTCC
TTACGGTACGGTTATGGGGCGGGTGACAAAGTGGTGACAGGGCGCTAGGCTTTTCTTCAC
GATCGTCGCCGGTTGCTCTCGCGATCGGTTGCGATTTGACTGCAAAACAAACAATACTGG
TTGGTACTGTGCTTTCTGTTTTGGGGTTTCTTTCAATGAAAATGTTCAACGAATGACTGG
AGTAGGCAAGAAAAAAAAAACAAACACGCCCGTGTTTAAAGCTATATAAGTATAATGATG
CTAG

consensusID : consensus_2108#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 521
fasta sequence

                              [CCACGGCTAAATGCTGTTTTTTTTTTTCCTNTAGATTTCCTTACGGTACGGTTATGGGGCGGGTGACAAAGTGGTGACAGGGCGCTAGGCTTTTCTTCACGATCGTCGCCGGTTGCTCTCGCGATCGGTTGCGATTTGACTGCAAAACAAACAATACTGGTTGGTACTGTGCTTTCTGTTTTGGGGTTTCTTTCAATGAAAATGTTCAACGAATGACTGGAGTAGGCANAGAAAAACAAAAACAAACACGCCCGTGTTTAAAGCTATATAAGTATAATGATGCTAGGGGCTAGTTAAGTAACCAAGTCAAAGTCAGACTCATTCTGTTCNNGTACGGTNTTTTTANTCATCTATNTNTTGTCCTCTCTCTCTCTCCTGGTACATAGATTTACAACCGGATGCGTTGTGCTGCACATTCGAGCGAAGGTGACTCCGCTCNATACTCTTTGACNCTAGCTCTCTCACGTAGTCTCCCATCCCCACCCAATCCTTACCTCCCTTAACCACTCATCCCCTTCNCG]

[+] EMBL AL695816             [CCACGGCTAAATGCTGTTTTTTTTTTTCCTNTAGATTTCCTTACGGTACGGTTATGGGGCGGGTGACAAAGTGGTGACAGGGCGCTAGGCTTTTCTTCACGATCGTCGCCGGTTGCTCTCGCGATCGGTTGCGATTTGACTGCAAAACAAACAATACTGGTTGGTACTGTGCTTTCTGTTTTGGGGTTTCTTTCAATGAAAATGTTCAACGAATGACTGGAGTAGGCANAGAAAAACAAAAACAAACACGCCCGTGTTTAAAGCTATATAAGTATAATGATGCTAGGGGCTAGTTAAGTAACCAAGTCAAAGTCAGACTCATTCTGTTCNNGTACGGTNTTTTTANTCATCTATNTNTTGTCCTCTCTCTCTCTCCTGGTACATAGATTTACAACCGGATGCGTTGTGCTGCACATTCGAGCGAAGGTGACTCCGCTCNATACTCTTTGACNCTAGCTCTCTCACGTAGTCTCCCATCCCCACCCAATCCTTACCTCCCTTAACCACTCATCCCCTTCNCG]




>consensus_2108#1
CCACGGCTAAATGCTGTTTTTTTTTTTCCTNTAGATTTCCTTACGGTACGGTTATGGGGC
GGGTGACAAAGTGGTGACAGGGCGCTAGGCTTTTCTTCACGATCGTCGCCGGTTGCTCTC
GCGATCGGTTGCGATTTGACTGCAAAACAAACAATACTGGTTGGTACTGTGCTTTCTGTT
TTGGGGTTTCTTTCAATGAAAATGTTCAACGAATGACTGGAGTAGGCANAGAAAAACAAA
AACAAACACGCCCGTGTTTAAAGCTATATAAGTATAATGATGCTAGGGGCTAGTTAAGTA
ACCAAGTCAAAGTCAGACTCATTCTGTTCNNGTACGGTNTTTTTANTCATCTATNTNTTG
TCCTCTCTCTCTCTCCTGGTACATAGATTTACAACCGGATGCGTTGTGCTGCACATTCGA
GCGAAGGTGACTCCGCTCNATACTCTTTGACNCTAGCTCTCTCACGTAGTCTCCCATCCC
CACCCAATCCTTACCTCCCTTAACCACTCATCCCCTTCNCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2108#0      CCGGTGCGTATAGCTTAATCATTTTCGGGGGGATGAAAGCAAACCAGAGAATGGTTGAGG 60
consensus_2108#1      ------------------------------------------------------------
                                                                                  

consensus_2108#0      GTGAATGTGCAATTGTAAGCAGAAGGCTAGAGCAGAACCAAGATAGTGCAGCAGCAGCAG 120
consensus_2108#1      ------------------------------------------------------------
                                                                                  

consensus_2108#0      CAGCAAGATTGATATTCACGACGACGATGCACGATAAGCGAGTAAACCGTCTAGGAAAGG 180
consensus_2108#1      ------------------------------------------------------------
                                                                                  

consensus_2108#0      GTTTTTTTTGTTTCTTTGTTTTGGTTTGCGTTGATCGTGTGTGTGCGTGGTTTTTTTTAC 240
consensus_2108#1      ------------------------------------------------------------
                                                                                  

consensus_2108#0      ATTATACTCTCCGTTTTGTTACGGCAGGTTTTTGTTTTGTTTTTGTTTTGTTAGATTTCC 300
consensus_2108#1      ------------------CCACGGCTAAATGCTGTTTTTTTTTTTCCTN--TAGATTTCC 40
                                          *****    *  ****** *****   *   *********

consensus_2108#0      TTACGGTACGGTTATGGGGCGGGTGACAAAGTGGTGACAGGGCGCTAGGCTTTTCTTCAC 360
consensus_2108#1      TTACGGTACGGTTATGGGGCGGGTGACAAAGTGGTGACAGGGCGCTAGGCTTTTCTTCAC 100
                      ************************************************************

consensus_2108#0      GATCGTCGCCGGTTGCTCTCGCGATCGGTTGCGATTTGACTGCAAAACAAACAATACTGG 420
consensus_2108#1      GATCGTCGCCGGTTGCTCTCGCGATCGGTTGCGATTTGACTGCAAAACAAACAATACTGG 160
                      ************************************************************

consensus_2108#0      TTGGTACTGTGCTTTCTGTTTTGGGGTTTCTTTCAATGAAAATGTTCAACGAATGACTGG 480
consensus_2108#1      TTGGTACTGTGCTTTCTGTTTTGGGGTTTCTTTCAATGAAAATGTTCAACGAATGACTGG 220
                      ************************************************************

consensus_2108#0      AGTAGGCAAGAAAAAA--AAAACAAACACGCCCGTGTTTAAAGCTATATAAGTATAATGA 538
consensus_2108#1      AGTAGGCANAGAAAAACAAAAACAAACACGCCCGTGTTTAAAGCTATATAAGTATAATGA 280
                      ********   *****  ******************************************

consensus_2108#0      TGCTAG------------------------------------------------------ 544
consensus_2108#1      TGCTAGGGGCTAGTTAAGTAACCAAGTCAAAGTCAGACTCATTCTGTTCNNGTACGGTNT 340
                      ******                                                      

consensus_2108#0      ------------------------------------------------------------
consensus_2108#1      TTTTANTCATCTATNTNTTGTCCTCTCTCTCTCTCCTGGTACATAGATTTACAACCGGAT 400
                                                                                  

consensus_2108#0      ------------------------------------------------------------
consensus_2108#1      GCGTTGTGCTGCACATTCGAGCGAAGGTGACTCCGCTCNATACTCTTTGACNCTAGCTCT 460
                                                                                  

consensus_2108#0      ------------------------------------------------------------
consensus_2108#1      CTCACGTAGTCTCCCATCCCCACCCAATCCTTACCTCCCTTAACCACTCATCCCCTTCNC 520
                                                                                  

consensus_2108#0      -
consensus_2108#1      G 521