cluster # 2111

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Anopheles gambiae
cluster # 2111 cluster # 2111 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2111#0 length = 593 sequences # 1

consensus_2111#1 length = 573 sequences # 1

consensusID : consensus_2111#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [CCCACCGGTGGGCTGAAAAGTGACCACACGCAAATCGTTCTTTACTTTGCCCAGGAGTAGAATACTCACAACATTTCGTTGTGGCGGCCGTTAGTTGTTCGCTTACTCTAACCCCAACGTGGTTTGTTCTATTTCCCTCGCAGAGCTCAAGAGGTGGTGCGTCTTGCAACGTTGCGACTACCAAAGGGATCGTTCTCCGAGAAGCAGTTTACCGAAAGGATCGAAAAGATCCACCAATCGGTAAAGATGTTGCAGAAAAACGTTGACCAAGCCAAACAGAAGATTACCACGCAGCAGATGGAGCTGGAAATGAAGAAGAAAACTGCCAAGGAGAAAACGTTCACACTGCCCGTCAAGCAGGAGGACATCATCAAGCAAATCATTGGAGAAATGTACACACAGATCGATTCGAACGTGAAGGACGTCAAAAAGATGAACAACATTCTTAATCTCACCTGAGCTGATTGTACATTTGTTTTACTTTTCTTAATGCTTTTTGCTTTTACTTAACGTTTAATGCTTTTCCTGTTTTATCTATGAATTATTCATTTCCGTACGAATAAAGCGCGATTAATGTTTCGCAACCGAACTTT]

[+] EMBL BX627211             [CCCACCGGTGGGCTGAAAAGTGACCACACGCAAATCGTTCTTTACTTTGCCCAGGAGTAGAATACTCACAACATTTCGTTGTGGCGGCCGTTAGTTGTTCGCTTACTCTAACCCCAACGTGGTTTGTTCTATTTCCCTCGCAGAGCTCAAGAGGTGGTGCGTCTTGCAACGTTGCGACTACCAAAGGGATCGTTCTCCGAGAAGCAGTTTACCGAAAGGATCGAAAAGATCCACCAATCGGTAAAGATGTTGCAGAAAAACGTTGACCAAGCCAAACAGAAGATTACCACGCAGCAGATGGAGCTGGAAATGAAGAAGAAAACTGCCAAGGAGAAAACGTTCACACTGCCCGTCAAGCAGGAGGACATCATCAAGCAAATCATTGGAGAAATGTACACACAGATCGATTCGAACGTGAAGGACGTCAAAAAGATGAACAACATTCTTAATCTCACCTGAGCTGATTGTACATTTGTTTTACTTTTCTTAATGCTTTTTGCTTTTACTTAACGTTTAATGCTTTTCCTGTTTTATCTATGAATTATTCATTTCCGTACGAATAAAGCGCGATTAATGTTTCGCAACCGAACTTT]




>consensus_2111#0
CCCACCGGTGGGCTGAAAAGTGACCACACGCAAATCGTTCTTTACTTTGCCCAGGAGTAG
AATACTCACAACATTTCGTTGTGGCGGCCGTTAGTTGTTCGCTTACTCTAACCCCAACGT
GGTTTGTTCTATTTCCCTCGCAGAGCTCAAGAGGTGGTGCGTCTTGCAACGTTGCGACTA
CCAAAGGGATCGTTCTCCGAGAAGCAGTTTACCGAAAGGATCGAAAAGATCCACCAATCG
GTAAAGATGTTGCAGAAAAACGTTGACCAAGCCAAACAGAAGATTACCACGCAGCAGATG
GAGCTGGAAATGAAGAAGAAAACTGCCAAGGAGAAAACGTTCACACTGCCCGTCAAGCAG
GAGGACATCATCAAGCAAATCATTGGAGAAATGTACACACAGATCGATTCGAACGTGAAG
GACGTCAAAAAGATGAACAACATTCTTAATCTCACCTGAGCTGATTGTACATTTGTTTTA
CTTTTCTTAATGCTTTTTGCTTTTACTTAACGTTTAATGCTTTTCCTGTTTTATCTATGA
ATTATTCATTTCCGTACGAATAAAGCGCGATTAATGTTTCGCAACCGAACTTT

consensusID : consensus_2111#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 573
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTGACCACACGCAAATCGTTCTTTACTTTGCCCAGGAGTAGAATACTCACAACATTTCGTTGTGGCGGCCGTTAGTTGTTCGCTTACTCTAACCCCAACGTGGTTTGTTCTATTTCCCTCGCAGAGCTCAAGAGGTGGTGCGTCTTGCAACGTTGCGACTACCAAAGGGATCGTTCTCCGAGAAGCAGTTTACCGAAAGGATCGAAAAGATCCACCAATCGGTAAAGATGTTGCAGAAAAACGTTGACCAAGCCAAACAGAAGATTACCACGCAGCAGATGGAGCTGGAAATGAAGAAGAAAACTGCCAAGGAGAAAACGTTCACACTGCCCGTCAAGCAGGAGGACATCATCAAGCAAATCATTGGAGAAATGTACACACAGATCGATTCGAACGTGAAGGACGTCAAAAAGATGAACAACATTCTTAATCTCACCTGAGCTGATTGTACATTTGTTTTACTTTTCTTAATGCTTTTTGCTTTTACTTAACGTTTAATGCTTTTCCTGTTTTATCTATGAATTATTCATTTCCGTACGAATAAAG]

[+] EMBL BM652039             [CCGCCCACGCGTCCGCCCACGCGTCCGGTGACCACACGCAAATCGTTCTTTACTTTGCCCAGGAGTAGAATACTCACAACATTTCGTTGTGGCGGCCGTTAGTTGTTCGCTTACTCTAACCCCAACGTGGTTTGTTCTATTTCCCTCGCAGAGCTCAAGAGGTGGTGCGTCTTGCAACGTTGCGACTACCAAAGGGATCGTTCTCCGAGAAGCAGTTTACCGAAAGGATCGAAAAGATCCACCAATCGGTAAAGATGTTGCAGAAAAACGTTGACCAAGCCAAACAGAAGATTACCACGCAGCAGATGGAGCTGGAAATGAAGAAGAAAACTGCCAAGGAGAAAACGTTCACACTGCCCGTCAAGCAGGAGGACATCATCAAGCAAATCATTGGAGAAATGTACACACAGATCGATTCGAACGTGAAGGACGTCAAAAAGATGAACAACATTCTTAATCTCACCTGAGCTGATTGTACATTTGTTTTACTTTTCTTAATGCTTTTTGCTTTTACTTAACGTTTAATGCTTTTCCTGTTTTATCTATGAATTATTCATTTCCGTACGAATAAAG]




>consensus_2111#1
CCGCCCACGCGTCCGCCCACGCGTCCGGTGACCACACGCAAATCGTTCTTTACTTTGCCC
AGGAGTAGAATACTCACAACATTTCGTTGTGGCGGCCGTTAGTTGTTCGCTTACTCTAAC
CCCAACGTGGTTTGTTCTATTTCCCTCGCAGAGCTCAAGAGGTGGTGCGTCTTGCAACGT
TGCGACTACCAAAGGGATCGTTCTCCGAGAAGCAGTTTACCGAAAGGATCGAAAAGATCC
ACCAATCGGTAAAGATGTTGCAGAAAAACGTTGACCAAGCCAAACAGAAGATTACCACGC
AGCAGATGGAGCTGGAAATGAAGAAGAAAACTGCCAAGGAGAAAACGTTCACACTGCCCG
TCAAGCAGGAGGACATCATCAAGCAAATCATTGGAGAAATGTACACACAGATCGATTCGA
ACGTGAAGGACGTCAAAAAGATGAACAACATTCTTAATCTCACCTGAGCTGATTGTACAT
TTGTTTTACTTTTCTTAATGCTTTTTGCTTTTACTTAACGTTTAATGCTTTTCCTGTTTT
ATCTATGAATTATTCATTTCCGTACGAATAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2111#0      ---CCCACCGGTGGGCTGAAA-----AGTGACCACACGCAAATCGTTCTTTACTTTGCCC 52
consensus_2111#1      CCGCCCACGCGTCCGCCCACGCGTCCGGTGACCACACGCAAATCGTTCTTTACTTTGCCC 60
                         *****  **  **  *        *********************************

consensus_2111#0      AGGAGTAGAATACTCACAACATTTCGTTGTGGCGGCCGTTAGTTGTTCGCTTACTCTAAC 112
consensus_2111#1      AGGAGTAGAATACTCACAACATTTCGTTGTGGCGGCCGTTAGTTGTTCGCTTACTCTAAC 120
                      ************************************************************

consensus_2111#0      CCCAACGTGGTTTGTTCTATTTCCCTCGCAGAGCTCAAGAGGTGGTGCGTCTTGCAACGT 172
consensus_2111#1      CCCAACGTGGTTTGTTCTATTTCCCTCGCAGAGCTCAAGAGGTGGTGCGTCTTGCAACGT 180
                      ************************************************************

consensus_2111#0      TGCGACTACCAAAGGGATCGTTCTCCGAGAAGCAGTTTACCGAAAGGATCGAAAAGATCC 232
consensus_2111#1      TGCGACTACCAAAGGGATCGTTCTCCGAGAAGCAGTTTACCGAAAGGATCGAAAAGATCC 240
                      ************************************************************

consensus_2111#0      ACCAATCGGTAAAGATGTTGCAGAAAAACGTTGACCAAGCCAAACAGAAGATTACCACGC 292
consensus_2111#1      ACCAATCGGTAAAGATGTTGCAGAAAAACGTTGACCAAGCCAAACAGAAGATTACCACGC 300
                      ************************************************************

consensus_2111#0      AGCAGATGGAGCTGGAAATGAAGAAGAAAACTGCCAAGGAGAAAACGTTCACACTGCCCG 352
consensus_2111#1      AGCAGATGGAGCTGGAAATGAAGAAGAAAACTGCCAAGGAGAAAACGTTCACACTGCCCG 360
                      ************************************************************

consensus_2111#0      TCAAGCAGGAGGACATCATCAAGCAAATCATTGGAGAAATGTACACACAGATCGATTCGA 412
consensus_2111#1      TCAAGCAGGAGGACATCATCAAGCAAATCATTGGAGAAATGTACACACAGATCGATTCGA 420
                      ************************************************************

consensus_2111#0      ACGTGAAGGACGTCAAAAAGATGAACAACATTCTTAATCTCACCTGAGCTGATTGTACAT 472
consensus_2111#1      ACGTGAAGGACGTCAAAAAGATGAACAACATTCTTAATCTCACCTGAGCTGATTGTACAT 480
                      ************************************************************

consensus_2111#0      TTGTTTTACTTTTCTTAATGCTTTTTGCTTTTACTTAACGTTTAATGCTTTTCCTGTTTT 532
consensus_2111#1      TTGTTTTACTTTTCTTAATGCTTTTTGCTTTTACTTAACGTTTAATGCTTTTCCTGTTTT 540
                      ************************************************************

consensus_2111#0      ATCTATGAATTATTCATTTCCGTACGAATAAAGCGCGATTAATGTTTCGCAACCGAACTT 592
consensus_2111#1      ATCTATGAATTATTCATTTCCGTACGAATAAAG--------------------------- 573
                      *********************************                           

consensus_2111#0      T 593
consensus_2111#1      -