These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1042 fasta sequence [CCNNGGATTAATTGATCTTACACGAAAGTGCTGACGCTTACCATACTGTATAAATACATTTTATGCAGTAAATGATGTTTTCTTTTGATTGATACCACTCTTTTCTCTGATCATACTTCGACAATGAGTGAAATCAGTGCTTAAATTGCCTCTNTTTCCTGTAAATTATACATTNTACAGATCAAAGATCCATCCTGGCTCGCCGATGTAGATGCAGCACAGTNTCTGCTCCTCTCATGGAATTATTAGAAAGGTATCAAGAAGGGAACGACGATNGATGTAGATTGTCAAAGACGAACAGCCATGACGCCGCCTCACGTCTCTCAGTNACCTTNACGAAATTTTAATGCCAACGAGGCCAGTTCTTCCGGAACGGGTGGGATCAGCTANAATGCGGCCAAACAGTAGCAATAAGTAGATGGCAATNCGGCCNATTATCACTATGTACANCTGTAGNNNACGCATGAGGATGCTGGGCACTGGACAGGCACGCCACTCCACTCGCGGTCGGCTCACTACCGCACGAACACAAACCCGTGAAAACCTTGTGACGGCACANGCCGGCCGNGCCGGCCGGCTCACCCTGCTGAAGCCAAGGATCCCACGTGCACGCCTGGCAACGCACACGCACGGNCNACCGGGANATCTTCCGTGCACCAAACANGNTAACCACCCTAGCCCCTGCNCCGNGGTACCCACANCTAAGAAAACAACNTTATCCTGGGNCAACTNCAGGTACNCAAGTGGCCTTGGCCCCACAAACCGCCAAANACACCCAAAACAATGGGTGATAACCACAACGCTAATCATGGAGCGGCGAANTTGCTCCAAGNNAAAAAGCCCCGANGANGGGATGATACTACTACNNGCGCTATACCANATCGAATGCACATTCAATGGCAAAACTCGATCGNNCATAANGAATTCACGNCGNNGTCNNNATCAANACAGTAACTGTAGATGATAGCTTNCATAGNCGCCACNCGCTACGGTNCNGNGCGNACTGTCCAACNAAAGACATTNCAAAACTACAGCCTATGGT] [+] EMBL AL695874 [CCNNGGATTAATTGATCTTACACGAAAGTGCTGACGCTTACCATACTGTATAAATACATTTTATGCAGTAAATGATGTTTTCTTTTGATTGATACCACTCTTTTCTCTGATCATACTTCGACAATGAGTGAAATCAGTGCTTAAATTGCCTCTNTTTCCTGTAAATTATACATTNTACAGATCAAAGATCCATCCTGGCTCGCCGATGTAGATGCAGCACAGTNTCTGCTCCTCTCATGGAATTATTAGAAAGGTATCAAGAAGGGAACGACGATNGATGTAGATTGTCAAAGACGAACAGCCATGACGCCGCCTCACGTCTCTCAGTNACCTTNACGAAATTTTAATGCCAACGAGGCCAGTTCTTCCGGAACGGGTGGGATCAGCTANAATGCGGCCAAACAGTAGCAATAAGTAGATGGCAATNCGGCCNATTATCACTATGTACANCTGTAGNNNACGCATGAGGATGCTGGGCACTGGACAGGCACGCCACTCCACTCGCGGTCGGCTCACTACCGCACGAACACAAACCCGTGAAAACCTTGTGACGGCACANGCCGGCCGNGCCGGCCGGCTCACCCTGCTGAAGCCAAGGATCCCACGTGCACGCCTGGCAACGCACACGCACGGNCNACCGGGANATCTTCCGTGCACCAAACANGNTAACCACCCTAGCCCCTGCNCCGNGGTACCCACANCTAAGAAAACAACNTTATCCTGGGNCAACTNCAGGTACNCAAGTGGCCTTGGCCCCACAAACCGCCAAANACACCCAAAACAATGGGTGATAACCACAACGCTAATCATGGAGCGGCGAANTTGCTCCAAGNNAAAAAGCCCCGANGANGGGATGATACTACTACNNGCGCTATACCANATCGAATGCACATTCAATGGCAAAACTCGATCGNNCATAANGAATTCACGNCGNNGTCNNNATCAANACAGTAACTGTAGATGATAGCTTNCATAGNCGCCACNCGCTACGGTNCNGNGCGNACTGTCCAACNAAAGACATTNCAAAACTACAGCCTATGGT] consensusID : consensus_2114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [CCGCGGGTTTATAGAGAGCAGAACAGTTCGCATCATTTTAAAAATTTATTTCTCGATGTGATAAAAGATCGAGATGCGAATTAAGTATCATGTGAAAAGGCACATTGGCACGTTCGCAGCAGGTCTGCGGTAATTTTAAATCTTCAGAAAATATTTGTAATTCGCTACAAATATTTCTTCATTTTAGGAATCAAATCAGATATAAACGGACAAGCCTTGAAGGTGAAGAGAGCTACTACTCAACACTAACACTGTCCGTGTGTCGAACACATGATTCCTTTCCCTTGATGGATGACGTTCATGATGTATTTTTAGTGCGTTAGCCCATAAAACTGTTCGTGATTAGTTTTGTAGGCGAAATATACTGTTCAGTTGCAGTAATGCAGCATATAAAATTGATGGAAAGTTTTTTCTTTCTTCCTTGGAAAATAAAATTGGCTTAAATTACACGAAAGTGTGACGCTTACCATACTGTATAAATACATTTTATGCAGTAAATGTTTTCTTTTGATTGATACCACTCTTTTTCTGATCATACTTCGACAATGAGTGAAATCAGTGCTTAAATTGCCTCTTTTCCTGTAAATTATACATTTACAGATCAAAGATCCATCCGGCTCGCCGATGTAGATGCGCACAGTTCTGCTCCTCTCATGGAATTATTAGA] [+] EMBL BM597504 [CCGCGGGTTTATAGAGAGCAGAACAGTTCGCATCATTTTAAAAATTTATTTCTCGATGTGATAAAAGATCGAGATGCGAATTAAGTATCATGTGAAAAGGCACATTGGCACGTTCGCAGCAGGTCTGCGGTAATTTTAAATCTTCAGAAAATATTTGTAATTCGCTACAAATATTTCTTCATTTTAGGAATCAAATCAGATATAAACGGACAAGCCTTGAAGGTGAAGAGAGCTACTACTCAACACTAACACTGTCCGTGTGTCGAACACATGATTCCTTTCCCTTGATGGATGACGTTCATGATGTATTTTTAGTGCGTTAGCCCATAAAACTGTTCGTGATTAGTTTTGTAGGCGAAATATACTGTTCAGTTGCAGTAATGCAGCATATAAAATTGATGGAAAGTTTTTTCTTTCTTCCTTGGAAAATAAAATTGGCTTAAATTACACGAAAGTGTGACGCTTACCATACTGTATAAATACATTTTATGCAGTAAATGTTTTCTTTTGATTGATACCACTCTTTTTCTGATCATACTTCGACAATGAGTGAAATCAGTGCTTAAATTGCCTCTTTTCCTGTAAATTATACATTTACAGATCAAAGATCCATCCGGCTCGCCGATGTAGATGCGCACAGTTCTGCTCCTCTCATGGAATTATTAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2114#0 CCNNGGATTAATTGATCTTACACGAAAGTGCTGACGCTTACCATACTGTATAAATACATT 60 consensus_2114#1 ------------------------------------------------------------ consensus_2114#0 TTATGCAGTAAATGATGTTTTCTTTTGATTGATACCACTCTTTTCTCTGATCATACTTCG 120 consensus_2114#1 ------------------------------------------------------------ consensus_2114#0 ACAATGAGTGAAATCAGTGCTTAAATTGCCTCTNTTTCCTGTAAATTATACATTNTACAG 180 consensus_2114#1 ------------------------------------------------------------ consensus_2114#0 ATCAAAGATCCATCCTGGCTCGCCGATGTAGATGCAGCACAGTNTCTGCTCCTCTCATGG 240 consensus_2114#1 -CCGCGGGTTTA---TAGAGAGCAGAACAGTTCGCATCATTTTAAAAATTTATTTCTCGA 56 * * * * * * ** ** *** ** * * * ** * consensus_2114#0 AATTATTAGAAAGGTATCAAGAAGGGAACGACGATNGATGTAGATTGTCAAAGACGAACA 300 consensus_2114#1 TGTGATAAAAG----ATCGAGATGCGAATTAAGTATCATGTGAAAAGGCACATTGGCACG 112 * ** * * *** *** * *** * * **** * * ** * * ** consensus_2114#0 GCCATGACGCCGCCTCACGTCTCTCAGTNACCTTNACGAAATTTTAATGCCAACGAGGCC 360 consensus_2114#1 TTCGCA--GCAGGTCTGCGGTAATTTTAAATCTTCAGAAAATATT--TGTAATTCGCTAC 168 * ** * ** * * *** * **** ** ** * * consensus_2114#0 AGTTCTTCCGGAACGGGTGGGATCAGCTANAATGCGGCCAAACAGTAGCAATAAGTAGAT 420 consensus_2114#1 AAATATTTCTTCATTTTAGGAATCAAATCAGATATAAACGGACAAGCCTTGAAGGTGAAG 228 * * ** * * ** **** * ** * *** * ** * consensus_2114#0 GGCAATNCGGCCNATTATCACTATGTACANCTGTAGNNNACGCATGAGGATGCTGGGCAC 480 consensus_2114#1 AGAGCTACTACTCAACACTAACAC-TGTCCGTGTGTCGAACACATGA---TTCCTTTCCC 284 * * * * * * * * * *** ** ***** * * * * consensus_2114#0 TGGACAGGCACGCCACTCCACTCGCGGTCGGCTCACTACCGCACGAACACAAACCCGTGA 540 consensus_2114#1 TTGATGGATGACGTTCATGATGTATTTTTAGTGCGTTAGCCCATAAAACTG--TTCGTGA 342 * ** * * * * * * ** * ** ** ***** consensus_2114#0 A-AACCTTGT-GACGGCACANGCCGGCCGNGCCGGCCGGCTCACCCTGCTGAAGCCAAGG 598 consensus_2114#1 TTAGTTTTGTAGGCGAAATATACTGTTCAGTTGCAGTAATGCAGCATATAAAATTGATGG 402 * **** * ** * * * * * ** * * ** * ** consensus_2114#0 A----TCCCACGTGCACGCCTGGCAACGCACAC--GCACGGNCNACCGGGANATCTTCCG 652 consensus_2114#1 AAAGTTTTTTCTTTCTTCCTTGGAAAATAAAATTGGCTTAAATTACACGAAAGTGTGACG 462 * * * * * * *** ** * * ** ** * * * * ** consensus_2114#0 TGCACCAAACANGNTAACCACCCTAGCCCCTGCNCCGNGGTACCCACANCTAAGAAAACA 712 consensus_2114#1 CTTACCATACTGTATAAATACATTTTATGCAGTAAATGTTTTCTTTTGATT--GATACCA 520 **** ** *** ** * * * * * * ** * ** consensus_2114#0 ACNTTATCCTGGGNCAACTNCAGGTACNCAAGTGGCCTTGGCCCCACAAACCGCCAAANA 772 consensus_2114#1 CTCTTTTTCTGATCATACTTCGACAATG--AGTGAAATCAGTGCT-TAAATTGCCTCTTT 577 ** * *** *** * * **** * * * *** *** consensus_2114#0 CACCCAAAACAATGGGTGATAACCACAACGCTAATCATGGAGCGGCGAANTTGCTCCAAG 832 consensus_2114#1 TCCTGTAAATTATACATTTACAGATCAAAGATCCATCCGGCTCGCCGATGTAGATGCGCA 637 * *** ** * * *** * * ** ** *** * * * * consensus_2114#0 NNAAAAAGCCCCGANGANGGGATGATACTACTACNNGCGCTATACCANATCGAATGCACA 892 consensus_2114#1 CAGTTCTGCTCCTCTCATGGAATTATTAGA------------------------------ 667 ** ** * ** ** ** * consensus_2114#0 TTCAATGGCAAAACTCGATCGNNCATAANGAATTCACGNCGNNGTCNNNATCAANACAGT 952 consensus_2114#1 ------------------------------------------------------------ consensus_2114#0 AACTGTAGATGATAGCTTNCATAGNCGCCACNCGCTACGGTNCNGNGCGNACTGTCCAAC 1012 consensus_2114#1 ------------------------------------------------------------ consensus_2114#0 NAAAGACATTNCAAAACTACAGCCTATGGT 1042 consensus_2114#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||