|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1042 fasta sequence
[CCNNGGATTAATTGATCTTACACGAAAGTGCTGACGCTTACCATACTGTATAAATACATTTTATGCAGTAAATGATGTTTTCTTTTGATTGATACCACTCTTTTCTCTGATCATACTTCGACAATGAGTGAAATCAGTGCTTAAATTGCCTCTNTTTCCTGTAAATTATACATTNTACAGATCAAAGATCCATCCTGGCTCGCCGATGTAGATGCAGCACAGTNTCTGCTCCTCTCATGGAATTATTAGAAAGGTATCAAGAAGGGAACGACGATNGATGTAGATTGTCAAAGACGAACAGCCATGACGCCGCCTCACGTCTCTCAGTNACCTTNACGAAATTTTAATGCCAACGAGGCCAGTTCTTCCGGAACGGGTGGGATCAGCTANAATGCGGCCAAACAGTAGCAATAAGTAGATGGCAATNCGGCCNATTATCACTATGTACANCTGTAGNNNACGCATGAGGATGCTGGGCACTGGACAGGCACGCCACTCCACTCGCGGTCGGCTCACTACCGCACGAACACAAACCCGTGAAAACCTTGTGACGGCACANGCCGGCCGNGCCGGCCGGCTCACCCTGCTGAAGCCAAGGATCCCACGTGCACGCCTGGCAACGCACACGCACGGNCNACCGGGANATCTTCCGTGCACCAAACANGNTAACCACCCTAGCCCCTGCNCCGNGGTACCCACANCTAAGAAAACAACNTTATCCTGGGNCAACTNCAGGTACNCAAGTGGCCTTGGCCCCACAAACCGCCAAANACACCCAAAACAATGGGTGATAACCACAACGCTAATCATGGAGCGGCGAANTTGCTCCAAGNNAAAAAGCCCCGANGANGGGATGATACTACTACNNGCGCTATACCANATCGAATGCACATTCAATGGCAAAACTCGATCGNNCATAANGAATTCACGNCGNNGTCNNNATCAANACAGTAACTGTAGATGATAGCTTNCATAGNCGCCACNCGCTACGGTNCNGNGCGNACTGTCCAACNAAAGACATTNCAAAACTACAGCCTATGGT]
[+] EMBL AL695874 [CCNNGGATTAATTGATCTTACACGAAAGTGCTGACGCTTACCATACTGTATAAATACATTTTATGCAGTAAATGATGTTTTCTTTTGATTGATACCACTCTTTTCTCTGATCATACTTCGACAATGAGTGAAATCAGTGCTTAAATTGCCTCTNTTTCCTGTAAATTATACATTNTACAGATCAAAGATCCATCCTGGCTCGCCGATGTAGATGCAGCACAGTNTCTGCTCCTCTCATGGAATTATTAGAAAGGTATCAAGAAGGGAACGACGATNGATGTAGATTGTCAAAGACGAACAGCCATGACGCCGCCTCACGTCTCTCAGTNACCTTNACGAAATTTTAATGCCAACGAGGCCAGTTCTTCCGGAACGGGTGGGATCAGCTANAATGCGGCCAAACAGTAGCAATAAGTAGATGGCAATNCGGCCNATTATCACTATGTACANCTGTAGNNNACGCATGAGGATGCTGGGCACTGGACAGGCACGCCACTCCACTCGCGGTCGGCTCACTACCGCACGAACACAAACCCGTGAAAACCTTGTGACGGCACANGCCGGCCGNGCCGGCCGGCTCACCCTGCTGAAGCCAAGGATCCCACGTGCACGCCTGGCAACGCACACGCACGGNCNACCGGGANATCTTCCGTGCACCAAACANGNTAACCACCCTAGCCCCTGCNCCGNGGTACCCACANCTAAGAAAACAACNTTATCCTGGGNCAACTNCAGGTACNCAAGTGGCCTTGGCCCCACAAACCGCCAAANACACCCAAAACAATGGGTGATAACCACAACGCTAATCATGGAGCGGCGAANTTGCTCCAAGNNAAAAAGCCCCGANGANGGGATGATACTACTACNNGCGCTATACCANATCGAATGCACATTCAATGGCAAAACTCGATCGNNCATAANGAATTCACGNCGNNGTCNNNATCAANACAGTAACTGTAGATGATAGCTTNCATAGNCGCCACNCGCTACGGTNCNGNGCGNACTGTCCAACNAAAGACATTNCAAAACTACAGCCTATGGT]
consensusID : consensus_2114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[CCGCGGGTTTATAGAGAGCAGAACAGTTCGCATCATTTTAAAAATTTATTTCTCGATGTGATAAAAGATCGAGATGCGAATTAAGTATCATGTGAAAAGGCACATTGGCACGTTCGCAGCAGGTCTGCGGTAATTTTAAATCTTCAGAAAATATTTGTAATTCGCTACAAATATTTCTTCATTTTAGGAATCAAATCAGATATAAACGGACAAGCCTTGAAGGTGAAGAGAGCTACTACTCAACACTAACACTGTCCGTGTGTCGAACACATGATTCCTTTCCCTTGATGGATGACGTTCATGATGTATTTTTAGTGCGTTAGCCCATAAAACTGTTCGTGATTAGTTTTGTAGGCGAAATATACTGTTCAGTTGCAGTAATGCAGCATATAAAATTGATGGAAAGTTTTTTCTTTCTTCCTTGGAAAATAAAATTGGCTTAAATTACACGAAAGTGTGACGCTTACCATACTGTATAAATACATTTTATGCAGTAAATGTTTTCTTTTGATTGATACCACTCTTTTTCTGATCATACTTCGACAATGAGTGAAATCAGTGCTTAAATTGCCTCTTTTCCTGTAAATTATACATTTACAGATCAAAGATCCATCCGGCTCGCCGATGTAGATGCGCACAGTTCTGCTCCTCTCATGGAATTATTAGA]
[+] EMBL BM597504 [CCGCGGGTTTATAGAGAGCAGAACAGTTCGCATCATTTTAAAAATTTATTTCTCGATGTGATAAAAGATCGAGATGCGAATTAAGTATCATGTGAAAAGGCACATTGGCACGTTCGCAGCAGGTCTGCGGTAATTTTAAATCTTCAGAAAATATTTGTAATTCGCTACAAATATTTCTTCATTTTAGGAATCAAATCAGATATAAACGGACAAGCCTTGAAGGTGAAGAGAGCTACTACTCAACACTAACACTGTCCGTGTGTCGAACACATGATTCCTTTCCCTTGATGGATGACGTTCATGATGTATTTTTAGTGCGTTAGCCCATAAAACTGTTCGTGATTAGTTTTGTAGGCGAAATATACTGTTCAGTTGCAGTAATGCAGCATATAAAATTGATGGAAAGTTTTTTCTTTCTTCCTTGGAAAATAAAATTGGCTTAAATTACACGAAAGTGTGACGCTTACCATACTGTATAAATACATTTTATGCAGTAAATGTTTTCTTTTGATTGATACCACTCTTTTTCTGATCATACTTCGACAATGAGTGAAATCAGTGCTTAAATTGCCTCTTTTCCTGTAAATTATACATTTACAGATCAAAGATCCATCCGGCTCGCCGATGTAGATGCGCACAGTTCTGCTCCTCTCATGGAATTATTAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2114#0 CCNNGGATTAATTGATCTTACACGAAAGTGCTGACGCTTACCATACTGTATAAATACATT 60
consensus_2114#1 ------------------------------------------------------------
consensus_2114#0 TTATGCAGTAAATGATGTTTTCTTTTGATTGATACCACTCTTTTCTCTGATCATACTTCG 120
consensus_2114#1 ------------------------------------------------------------
consensus_2114#0 ACAATGAGTGAAATCAGTGCTTAAATTGCCTCTNTTTCCTGTAAATTATACATTNTACAG 180
consensus_2114#1 ------------------------------------------------------------
consensus_2114#0 ATCAAAGATCCATCCTGGCTCGCCGATGTAGATGCAGCACAGTNTCTGCTCCTCTCATGG 240
consensus_2114#1 -CCGCGGGTTTA---TAGAGAGCAGAACAGTTCGCATCATTTTAAAAATTTATTTCTCGA 56
* * * * * * ** ** *** ** * * * ** *
consensus_2114#0 AATTATTAGAAAGGTATCAAGAAGGGAACGACGATNGATGTAGATTGTCAAAGACGAACA 300
consensus_2114#1 TGTGATAAAAG----ATCGAGATGCGAATTAAGTATCATGTGAAAAGGCACATTGGCACG 112
* ** * * *** *** * *** * * **** * * ** * * **
consensus_2114#0 GCCATGACGCCGCCTCACGTCTCTCAGTNACCTTNACGAAATTTTAATGCCAACGAGGCC 360
consensus_2114#1 TTCGCA--GCAGGTCTGCGGTAATTTTAAATCTTCAGAAAATATT--TGTAATTCGCTAC 168
* ** * ** * * *** * **** ** ** * *
consensus_2114#0 AGTTCTTCCGGAACGGGTGGGATCAGCTANAATGCGGCCAAACAGTAGCAATAAGTAGAT 420
consensus_2114#1 AAATATTTCTTCATTTTAGGAATCAAATCAGATATAAACGGACAAGCCTTGAAGGTGAAG 228
* * ** * * ** **** * ** * *** * ** *
consensus_2114#0 GGCAATNCGGCCNATTATCACTATGTACANCTGTAGNNNACGCATGAGGATGCTGGGCAC 480
consensus_2114#1 AGAGCTACTACTCAACACTAACAC-TGTCCGTGTGTCGAACACATGA---TTCCTTTCCC 284
* * * * * * * * * *** ** ***** * * * *
consensus_2114#0 TGGACAGGCACGCCACTCCACTCGCGGTCGGCTCACTACCGCACGAACACAAACCCGTGA 540
consensus_2114#1 TTGATGGATGACGTTCATGATGTATTTTTAGTGCGTTAGCCCATAAAACTG--TTCGTGA 342
* ** * * * * * * ** * ** ** *****
consensus_2114#0 A-AACCTTGT-GACGGCACANGCCGGCCGNGCCGGCCGGCTCACCCTGCTGAAGCCAAGG 598
consensus_2114#1 TTAGTTTTGTAGGCGAAATATACTGTTCAGTTGCAGTAATGCAGCATATAAAATTGATGG 402
* **** * ** * * * * * ** * * ** * **
consensus_2114#0 A----TCCCACGTGCACGCCTGGCAACGCACAC--GCACGGNCNACCGGGANATCTTCCG 652
consensus_2114#1 AAAGTTTTTTCTTTCTTCCTTGGAAAATAAAATTGGCTTAAATTACACGAAAGTGTGACG 462
* * * * * * *** ** * * ** ** * * * * **
consensus_2114#0 TGCACCAAACANGNTAACCACCCTAGCCCCTGCNCCGNGGTACCCACANCTAAGAAAACA 712
consensus_2114#1 CTTACCATACTGTATAAATACATTTTATGCAGTAAATGTTTTCTTTTGATT--GATACCA 520
**** ** *** ** * * * * * * ** * **
consensus_2114#0 ACNTTATCCTGGGNCAACTNCAGGTACNCAAGTGGCCTTGGCCCCACAAACCGCCAAANA 772
consensus_2114#1 CTCTTTTTCTGATCATACTTCGACAATG--AGTGAAATCAGTGCT-TAAATTGCCTCTTT 577
** * *** *** * * **** * * * *** ***
consensus_2114#0 CACCCAAAACAATGGGTGATAACCACAACGCTAATCATGGAGCGGCGAANTTGCTCCAAG 832
consensus_2114#1 TCCTGTAAATTATACATTTACAGATCAAAGATCCATCCGGCTCGCCGATGTAGATGCGCA 637
* *** ** * * *** * * ** ** *** * * * *
consensus_2114#0 NNAAAAAGCCCCGANGANGGGATGATACTACTACNNGCGCTATACCANATCGAATGCACA 892
consensus_2114#1 CAGTTCTGCTCCTCTCATGGAATTATTAGA------------------------------ 667
** ** * ** ** ** *
consensus_2114#0 TTCAATGGCAAAACTCGATCGNNCATAANGAATTCACGNCGNNGTCNNNATCAANACAGT 952
consensus_2114#1 ------------------------------------------------------------
consensus_2114#0 AACTGTAGATGATAGCTTNCATAGNCGCCACNCGCTACGGTNCNGNGCGNACTGTCCAAC 1012
consensus_2114#1 ------------------------------------------------------------
consensus_2114#0 NAAAGACATTNCAAAACTACAGCCTATGGT 1042
consensus_2114#1 ------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||