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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2128#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1057 fasta sequence
[AGATNGCCCAGGGTTTTGAAGCTGACTGCCCGTGCACTCGGCATCTGAGCTANTCGAAAAGGAGATGACGCTGCTGCGCGGTGACAAGCTGATGGAAGAGTTCCTCAAGGTGAATCCACAGCAAACCATACCCGTGCTGGACGATGGTGGCATCGTTATCACCTGAAGCCATGCCATCATGATTTTATCTCGTGTTGGCAAGTACAGGCGCGTACTGGAACCGTGTACTCCTAATACCGAGCGAAGCCTGGGTTAACGGCTGGGGCCCCGGGGTCCCACAACGGGAACTTANCAACACTACGAAGGGACTGGGGGGTTGTTAANATTCCTATATTAACCGCGGGTCTAAAGGTTTTATTACTTGGTNCTGAAACCCGGGTACCATATTTAATTCGCGTGGCAACACATCCGGTAACTTTCCCACACTTCCGGAATCCGGGATCCGAAACACATTCCCGTGNAAAATAGACGGTACACTGGTATGGTACATGGGACGGGATTACCGNCTTACGTACGGAATCANGTACCCTTGGGTGGGTGGCNNNNAAGAAGTTNCNTCTAANCCGGAATTTTGGCCCCGAANTATNTACGGCCTTGCGGATTCCTTTCTCAAGGGCGAATTTTGGCCCACTGGCTTGGGGTCTAGGTAGCGTTGGACANACNCCAGCNTCGTGGCACCTGGATNGTTCCCAAACGATATCCCCGAAAAGAAAGCCAACGGGGGAACCTNGAGACATGCGCGATGNGCGNCCATTTCNCCAACAGAAATGCGACTTTTGGAGCCAGGGTAACNTAAAACCAAAAGTGGAAAACGCACGAACAACCACGGNGTCTACCCCCNGCCGGANGGACTGCNCGNCCNCAANANCCCTTAGGGGGCCCGCAAGCTCAATCNTNGNATTGNCNCTATCGCNGCCCGAACCACGACAACAGCGGGAGAAAGGACGCACAAAAACNAAGGACTTAGCCACCNCACAAAGGNAANCCCCTAGGCTTNGAACCGGCAGACCAAACAAGACGGGAGGNTCGACCCGACACACGTNCAGNCACNAAGTAT]
[+] EMBL AL695999 [AGATNGCCCAGGGTTTTGAAGCTGACTGCCCGTGCACTCGGCATCTGAGCTANTCGAAAAGGAGATGACGCTGCTGCGCGGTGACAAGCTGATGGAAGAGTTCCTCAAGGTGAATCCACAGCAAACCATACCCGTGCTGGACGATGGTGGCATCGTTATCACCTGAAGCCATGCCATCATGATTTTATCTCGTGTTGGCAAGTACAGGCGCGTACTGGAACCGTGTACTCCTAATACCGAGCGAAGCCTGGGTTAACGGCTGGGGCCCCGGGGTCCCACAACGGGAACTTANCAACACTACGAAGGGACTGGGGGGTTGTTAANATTCCTATATTAACCGCGGGTCTAAAGGTTTTATTACTTGGTNCTGAAACCCGGGTACCATATTTAATTCGCGTGGCAACACATCCGGTAACTTTCCCACACTTCCGGAATCCGGGATCCGAAACACATTCCCGTGNAAAATAGACGGTACACTGGTATGGTACATGGGACGGGATTACCGNCTTACGTACGGAATCANGTACCCTTGGGTGGGTGGCNNNNAAGAAGTTNCNTCTAANCCGGAATTTTGGCCCCGAANTATNTACGGCCTTGCGGATTCCTTTCTCAAGGGCGAATTTTGGCCCACTGGCTTGGGGTCTAGGTAGCGTTGGACANACNCCAGCNTCGTGGCACCTGGATNGTTCCCAAACGATATCCCCGAAAAGAAAGCCAACGGGGGAACCTNGAGACATGCGCGATGNGCGNCCATTTCNCCAACAGAAATGCGACTTTTGGAGCCAGGGTAACNTAAAACCAAAAGTGGAAAACGCACGAACAACCACGGNGTCTACCCCCNGCCGGANGGACTGCNCGNCCNCAANANCCCTTAGGGGGCCCGCAAGCTCAATCNTNGNATTGNCNCTATCGCNGCCCGAACCACGACAACAGCGGGAGAAAGGACGCACAAAAACNAAGGACTTAGCCACCNCACAAAGGNAANCCCCTAGGCTTNGAACCGGCAGACCAAACAAGACGGGAGGNTCGACCCGACACACGTNCAGNCACNAAGTAT]
consensusID : consensus_2128#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[AGCAGATTGGTACTGTACACGAACCGCAAGAGTCCACCGTGCCGAGCCGTGAAGCTGACTGCCCGTGCACTCGGCATCGAGCTAGTCGAAAAGGAGATGACGCTGCTGCGCGGTGACAAGCTGATGGAAGAGTTCCTCAAGGTGAATCCACAGCAAACCATACCCGTGCTGGACGATGGTGGCATCGTTATCACCGCAAGCCATGCCATCACGATTTATCTCGTGTGCAAGTACGGCCGCGACGACGGTCTCTATCCGAGCGAGCTGGTACGGCGGGCCCGGGTCCACACGGCACTACACCTCGAGGCGGGTGTAATCTTTTCGCGGTTAAGTTTTCTGTTTGAACCGGTCATTTATTCGGGCAAATCGTACTTCCACTCCGATCGGATCGAACACATCCGGAAGGCGTACCGCTTGTTGGAGGATTCGCTCGTCGATCAGTACATGGTGGGCGAGAGTCTCACGATTGCCGACTTTAGCTGCATCTCCAGCATTGCCACGCTGGTCGGTGTGGTACCGCTGGACGAGTCCAAGTTCCCGAAGAGCACGGCCTGGATGCGGCGCATGCAGGAGCTGCCGTACTACGAGGAAGCGAACGGTACCGGGGCGCTCGAGCTGGCCGAGTTTGTGCTGGGCAAGAAGGAAGCCAATGCTTCCCA]
[+] EMBL AF515471 [AGCAGATTGGTACTGTACACGAACCGCAAGAGTCCACCGTGCCGAGCCGTGAAGCTGACTGCCCGTGCACTCGGCATCGAGCTAGTCGAAAAGGAGATGACGCTGCTGCGCGGTGACAAGCTGATGGAAGAGTTCCTCAAGGTGAATCCACAGCAAACCATACCCGTGCTGGACGATGGTGGCATCGTTATCACCGCAAGCCATGCCATCACGATTTATCTCGTGTGCAAGTACGGCCGCGACGACGGTCTCTATCCGAGCGAGCTGGTACGGCGGGCCCGGGTCCACACGGCACTACACCTCGAGGCGGGTGTAATCTTTTCGCGGTTAAGTTTTCTGTTTGAACCGGTCATTTATTCGGGCAAATCGTACTTCCACTCCGATCGGATCGAACACATCCGGAAGGCGTACCGCTTGTTGGAGGATTCGCTCGTCGATCAGTACATGGTGGGCGAGAGTCTCACGATTGCCGACTTTAGCTGCATCTCCAGCATTGCCACGCTGGTCGGTGTGGTACCGCTGGACGAGTCCAAGTTCCCGAAGAGCACGGCCTGGATGCGGCGCATGCAGGAGCTGCCGTACTACGAGGAAGCGAACGGTACCGGGGCGCTCGAGCTGGCCGAGTTTGTGCTGGGCAAGAAGGAAGCCAATGCTTCCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2128#0 ---------------------------------AGATNGCCCAGGGTTTTGAAGCTGACT 27
consensus_2128#1 AGCAGATTGGTACTGTACACGAACCGCAAGAGTCCACCGTGCCGAGCCGTGAAGCTGACT 60
* * * * * ***********
consensus_2128#0 GCCCGTGCACTCGGCATCTGAGCTANTCGAAAAGGAGATGACGCTGCTGCGCGGTGACAA 87
consensus_2128#1 GCCCGTGCACTCGGCATC-GAGCTAGTCGAAAAGGAGATGACGCTGCTGCGCGGTGACAA 119
****************** ****** **********************************
consensus_2128#0 GCTGATGGAAGAGTTCCTCAAGGTGAATCCACAGCAAACCATACCCGTGCTGGACGATGG 147
consensus_2128#1 GCTGATGGAAGAGTTCCTCAAGGTGAATCCACAGCAAACCATACCCGTGCTGGACGATGG 179
************************************************************
consensus_2128#0 TGGCATCGTTATCACCTGAAGCCATGCCATCATGATTTTATCTCGTGTTGGCAAGTACAG 207
consensus_2128#1 TGGCATCGTTATCACCGCAAGCCATGCCATCACGATTT-ATCTCGTGT--GCAAGTACGG 236
**************** ************** ***** ********* ******** *
consensus_2128#0 GCGCGTACTGGAACCGTGTACTCCTAATACCGAGCGAAGCCTGGGTTAACGGCTGGGGCC 267
consensus_2128#1 CCGCG-------ACGACGGTCTCT--AT-CCGAGCGAG--CTGGT---ACGGCGGG---C 278
**** ** * *** ** ******** **** ***** ** *
consensus_2128#0 CCGGGGTCCCACAACGGGAACTTANCAACACTACGAAGGGACTGGGGGGTTGTTAANATT 327
consensus_2128#1 CCGGGTCCACACGGC---------ACTACACCTCGAGGCGGGTGTAATCTTTTCGCGGT- 328
***** * *** * * **** *** * * ** ** * *
consensus_2128#0 CCTATATTAACCGCGGGTCTAAAGGTTTTATTACTTGGTNCTGAAACCCGGGTACCATAT 387
consensus_2128#1 --TAAGTTTTCTG----TTTGAA---CCGGTCATTTATTCGGGCAAATCGTACTTC-CAC 378
** ** * * * * ** * * ** * * ** ** * *
consensus_2128#0 TTAATTCGCGTGGCAACACATCCGGTAACTTTCCCACACTTCCGGAATCCGGGATCCGAA 447
consensus_2128#1 TCCGATCGGATCG-AACACATCCGGAAGGCGTACCGC-TTGTTGGA-----GGATTCGCT 431
* *** * * *********** * * ** * * *** **** **
consensus_2128#0 ACACATTCCCGTGNAAAATAGACGGTACACTGGTA--TGGTACATGGGACGGGATTACCG 505
consensus_2128#1 -CGTCGATCAGTACATGGTGGGCGAGAGTCTCACGATTGCCGACTTTAGCTGCATCTCCA 490
* * ** * * * ** * ** ** * * * ** **
consensus_2128#0 NCTTACGTACGGAATCANGTACCCTTGGGTGGGTGGCNNNNAAGAAGTTNCNTCTAANCC 565
consensus_2128#1 GCATTGCCACGCTGGTCGGTG---TGGTACCGCTGGACGAGTCCAAGTTCCCGAAGAGCA 547
* * *** ** * * * *** ***** * * *
consensus_2128#0 GGAATTTTGGCCCCGAANTATNTACGGCCTTGCGGATTCCTTTCTCAAGGGCGA-ATTTT 624
consensus_2128#1 CGG--CCTGGATGCGGCGCATGCAGGAGCTGCCGTACTACGAGGAAGCGAACGGTACCGG 605
* *** ** ** * * ** ** * * * * ** *
consensus_2128#0 GGCCCACTGGCTTGGGGTCTAGGTAGCGTTGGACANACNCCAGCNTCGTGGCACCTGGAT 684
consensus_2128#1 GGCGCTCGAGCT---GGCCGAGTTTGTGCTGGGCAAGAAGGAAGCCAATGCTTCCCA--- 659
*** * * *** ** * ** * * * *** ** * ** **
consensus_2128#0 NGTTCCCAAACGATATCCCCGAAAAGAAAGCCAACGGGGGAACCTNGAGACATGCGCGAT 744
consensus_2128#1 ------------------------------------------------------------
consensus_2128#0 GNGCGNCCATTTCNCCAACAGAAATGCGACTTTTGGAGCCAGGGTAACNTAAAACCAAAA 804
consensus_2128#1 ------------------------------------------------------------
consensus_2128#0 GTGGAAAACGCACGAACAACCACGGNGTCTACCCCCNGCCGGANGGACTGCNCGNCCNCA 864
consensus_2128#1 ------------------------------------------------------------
consensus_2128#0 ANANCCCTTAGGGGGCCCGCAAGCTCAATCNTNGNATTGNCNCTATCGCNGCCCGAACCA 924
consensus_2128#1 ------------------------------------------------------------
consensus_2128#0 CGACAACAGCGGGAGAAAGGACGCACAAAAACNAAGGACTTAGCCACCNCACAAAGGNAA 984
consensus_2128#1 ------------------------------------------------------------
consensus_2128#0 NCCCCTAGGCTTNGAACCGGCAGACCAAACAAGACGGGAGGNTCGACCCGACACACGTNC 1044
consensus_2128#1 ------------------------------------------------------------
consensus_2128#0 AGNCACNAAGTAT 1057
consensus_2128#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||