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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence
[GCACTACCATCGGACACGGCGGAATGGAAACGGTCCTACGGGCGACCTGTGAAGAATGTGCGCGTCGAGGCCACCTTCAAGCCGTTCGACCAGAACGCCCTCGAGCGGTACAAGGATGGCCGGTGGAACATCATCGATCATCCCGTGCTGCACATCTACGTGACGGAGTGTACCGACATCGAAGCGTACCGGGCGTCGGTAAAGGAAGAGATTGACCAGTGGCTCAAGGTGCTGAACAACTACAACGTGACCGACTGGATGATCCTGCTGGTCGAAACGTTGGACGTGAAAAAGTCGAAGAACATCCGTCGCCACGATGAACTTCGTAAACCTGGTGGCGGGTGTTGAGCAGCCGGTCGAGCTGGTGATTTCGGCGGGAAGCTTTCGCTTCCCGAAGGATGCCACCGCAACCGTGCGCTGTTCGAAGAACTTGAAGATGCGACTAGCCGCGATCGCCAACGGAGCCGCGGACGGGGAACGGCTACCGTTCGAAAAGGAGCTGGTAGTGCAGTTGGCAGAGTTTGCGCCGTTCGAAAAGCGATCCATCGCGCTGGAAGCGATCTGCGATCTGCCCGGCAAGCGCGAGGAACGTGCGATCGAGCAGAAGGTTTCGCTGCAGGTGCCCTGGAGCAGAAATGAAATCACCATCCCGCTACACTTTATGCCCGCGCTGATCGCGTCCTGCCGGCTTCATTCGTCAGCGACTATCGGCTCGTGCTGCGCGA]
[+] EMBL BX606192 [GCACTACCATCGGACACGGCGGAATGGAAACGGTCCTACGGGCGACCTGTGAAGAATGTGCGCGTCGAGGCCACCTTCAAGCCGTTCGACCAGAACGCCCTCGAGCGGTACAAGGATGGCCGGTGGAACATCATCGATCATCCCGTGCTGCACATCTACGTGACGGAGTGTACCGACATCGAAGCGTACCGGGCGTCGGTAAAGGAAGAGATTGACCAGTGGCTCAAGGTGCTGAACAACTACAACGTGACCGACTGGATGATCCTGCTGGTCGAAACGTTGGACGTGAAAAAGTCGAAGAACATCCGTCGCCACGATGAACTTCGTAAACCTGGTGGCGGGTGTTGAGCAGCCGGTCGAGCTGGTGATTTCGGCGGGAAGCTTTCGCTTCCCGAAGGATGCCACCGCAACCGTGCGCTGTTCGAAGAACTTGAAGATGCGACTAGCCGCGATCGCCAACGGAGCCGCGGACGGGGAACGGCTACCGTTCGAAAAGGAGCTGGTAGTGCAGTTGGCAGAGTTTGCGCCGTTCGAAAAGCGATCCATCGCGCTGGAAGCGATCTGCGATCTGCCCGGCAAGCGCGAGGAACGTGCGATCGAGCAGAAGGTTTCGCTGCAGGTGCCCTGGAGCAGAAATGAAATCACCATCCCGCTACACTTTATGCCCGCGCTGATCGCGTCCTGCCGGCTTCATTCGTCAGCGACTATCGGCTCGTGCTGCGCGA]
consensusID : consensus_2130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence
[CCGGGGGAACGGCTACCGTTCGAAAAGGAGCTGGTAGTGCAGTTGGCAGAGTTTGCGCCGTTCGAAAAGCGATCCATCGCGCTGGAAGCGATCTGCGATCTGCCCGGCAAGCGCGAGGAACGTGCGATCGAGCAGAAGGTTTCGCTGCAGGTGCCCTGGAGCAGAAATGAAATCACCATCCCGCTACACTTTATGCCCGCGCTGATCGCGTCCTGCCGGCTGCATTCGTCCGGCGCCCGTAAGTTTCTGCAGGTCGTCCTGAAGGGCGTCAGCGACTATCGGCTCGTGCTGCGCGATGCACGCATGACGTGTGCGGCCGAAGGTGTCACCATCATCGACATCAATCCGCCGGAGCAGCAGGAAACGGTCATGAGCAAGGCGCTGGCGATTTCGTACCTGTACGAGTTCCAGGTAGAGGCACTGAAGGCCGAAACGGAGCTGCCGATCGTAAACGTCGACTTTCGGATGCGCTTTGCCGATGCGACCGTGCCGGAAGAATGCCGCACCTACCTGCCGTACAGCGTGGACGTTCGACGTAATGGA]
[+] EMBL BM600452 [CCGGGGGAACGGCTACCGTTCGAAAAGGAGCTGGTAGTGCAGTTGGCAGAGTTTGCGCCGTTCGAAAAGCGATCCATCGCGCTGGAAGCGATCTGCGATCTGCCCGGCAAGCGCGAGGAACGTGCGATCGAGCAGAAGGTTTCGCTGCAGGTGCCCTGGAGCAGAAATGAAATCACCATCCCGCTACACTTTATGCCCGCGCTGATCGCGTCCTGCCGGCTGCATTCGTCCGGCGCCCGTAAGTTTCTGCAGGTCGTCCTGAAGGGCGTCAGCGACTATCGGCTCGTGCTGCGCGATGCACGCATGACGTGTGCGGCCGAAGGTGTCACCATCATCGACATCAATCCGCCGGAGCAGCAGGAAACGGTCATGAGCAAGGCGCTGGCGATTTCGTACCTGTACGAGTTCCAGGTAGAGGCACTGAAGGCCGAAACGGAGCTGCCGATCGTAAACGTCGACTTTCGGATGCGCTTTGCCGATGCGACCGTGCCGGAAGAATGCCGCACCTACCTGCCGTACAGCGTGGACGTTCGACGTAATGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2130#0 GCACTACCATCGGACACGGCGGAATGGAAACGGTCCTACGGGCGACCTGTGAAGAATGTG 60
consensus_2130#1 ------------------------------------------------------------
consensus_2130#0 CGCGTCGAGGCCACCTTCAAGCCGTTCGACCAGAACGCCCTCGAGCGGTACAAGGATGGC 120
consensus_2130#1 -----------------------------------------------------------C 1
*
consensus_2130#0 CGGTGGAACATC-ATCGATC-ATCCCGTGCTGCACATCTACGTGACGGAGTGTACCGACA 178
consensus_2130#1 CGGGGGAACGGCTACCGTTCGAAAAGGAGCTGGTAGTGCAGTTGGCAGAGTTTGCGCCGT 61
*** ***** * * ** ** * * **** * * ** * **** * *
consensus_2130#0 TCGAAGCGTACCGGGCGTCGGTAAAGGAAGAGATTGACCAGTGGCTCAAGGTGCTGAACA 238
consensus_2130#1 TCGAAAAG---CGATCCATCGCGCTGGAAGCGATCTGCGATCTGCCCGGCAAGC---GCG 115
***** * ** * * ***** *** * * ** * ** *
consensus_2130#0 ACTACAACGTGACCGACTGGATGATCCTGCTGGTCGAAACGTTGGACGTGAAAAAGTCGA 298
consensus_2130#1 AGGAACGTGCGATCGAGCAGAAGGTTTCGCTG-CAGGTGCCCTGGA---GCAGAAATGAA 171
* * * ** *** ** * * **** * * **** * * ** * *
consensus_2130#0 AGAACATCCGTCGCCACGATGAACTTCGTAAACCTGGTGGCGGGTGTTGAGCAGCCGGTC 358
consensus_2130#1 A------TCACCATCCCGCTACACTTTATGCCCGCGCTGATCG----CGTCCTGCCGGCT 221
* * * * ** * **** * * * ** * * * *****
consensus_2130#0 GAGCTGGTGATTTCGGCGGGAAGCTTTCGCT-----TCCCGAAGGATGCCACCG-CAACC 412
consensus_2130#1 GCATTCGTC-CGGCGCCCGTAAGTTTCTGCAGGTCGTCCTGAAGGGCGTCAGCGACTATC 280
* * ** ** * * *** ** ** *** ***** * ** ** * * *
consensus_2130#0 G---TGCGCTGTTCGAAGAACTTGAAGATGCGACTAGCCGCGATCGCCAACGGAGCCGCG 469
consensus_2130#1 GGCTCGTGCTGCGCGATGCACGC-ATGACGTGTGCGGCCGAAGGTGTCACCATCATCGAC 339
* * **** *** * ** * ** * * **** * ** * **
consensus_2130#0 GACGGGGAACGGCTACCGTTCGAAAAGGAGCTGGTAGTGCAGTTGGCAGAGTTTGCGCC- 528
consensus_2130#1 ATCAATCCGCCGGAGCAGCAGGAAACGGTCATGAGCAAGGCGCTGGC-GATTTCGTACCT 398
* * * * * **** ** ** * * **** ** ** * **
consensus_2130#0 GTTCGAAAAGCGATCCATCGCGCTGGAAGCGATCTGCGATCTGCCCGGCAAGCGCGAGGA 588
consensus_2130#1 GTACGAGTTCCAGGTAGAGGCACTGAAGGC----CGAAACGGAGCTGCCGATCGTAAACG 454
** *** * ** *** * ** * * * * * * ** *
consensus_2130#0 ACGTGCGATCGAGCAGAAGGTTTCGCTGCAGGTGCCCTGGAGCAGAAATGAAATCACCAT 648
consensus_2130#1 TCG-ACTTTCGGATGCGCTTTGCCGATGCGACCGTGCCGGAAGAATGCCGCACCTACCTG 513
** * *** * ** *** * * *** * * * ***
consensus_2130#0 CCCGCTACACTTTATGCCCGCGCTGATCGCGTCCTGCCGGCTTCATTCGTCAGCGACTAT 708
consensus_2130#1 CCGTACAGCGTGGACGTTCGACGTAATGGA------------------------------ 543
** * * * * ** * ** *
consensus_2130#0 CGGCTCGTGCTGCGCGA 725
consensus_2130#1 -----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||