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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence
[ATCCCCCGAGGTTATAATCGATTGGAAACGGTCACTAAACCCGGAACCATGCTTGATCGACNAAACGGCAAACGTGGATAGCAAGATCAACAGTTGATTGTGAGTTTTATGAAAACGAAATAAGTGGCGCAAAATACTCGAACTCGGACAAGAATTAGCTCCCGCGCAACGTTCCAACCTCCTCTGGGCCTGGCCGCTCGAGCAGGACGTGGAACGNGNCTCGNGTGAGGTGCTGGCGCGATGTGGAATACGAAATATTTGCTAGCATAGGCTTGTGGTACTTGGTTTGCTTGAGTGGATCATCGGACTGTGCAAATGAGGCTTATCAGTGTAATCGGGTATAGAACATCGACGAACGAATGGTAGAGCTCCAAGTACGCGCCCGTTCGGTACATTCCATTNAGCGTTCGTCAGCGGATCGGAAAGCTCGTTACGAGAGGTAAGCGGGCAAATGGCAGGACGAGCAGCCAGATGCGTTCGATGTCTTGCTACTTTCAACAACGGTGCTTGCGTTCGAGACCAGTATGTAANAGGAGNTTTACCTGGTCCGCNTCGCGATACTCACTTGGACCGGGCAGCGGAAAGGGCGTACACACAAACCATTGCCTTTGGNACCCGGTGCAGTCGTTTGANGCGTGCATTCGGAAACCTGCTGGAACAGNTCGCGGATNCGGN]
[+] EMBL AL934482 [ATCCCCCGAGGTTATAATCGATTGGAAACGGTCACTAAACCCGGAACCATGCTTGATCGACNAAACGGCAAACGTGGATAGCAAGATCAACAGTTGATTGTGAGTTTTATGAAAACGAAATAAGTGGCGCAAAATACTCGAACTCGGACAAGAATTAGCTCCCGCGCAACGTTCCAACCTCCTCTGGGCCTGGCCGCTCGAGCAGGACGTGGAACGNGNCTCGNGTGAGGTGCTGGCGCGATGTGGAATACGAAATATTTGCTAGCATAGGCTTGTGGTACTTGGTTTGCTTGAGTGGATCATCGGACTGTGCAAATGAGGCTTATCAGTGTAATCGGGTATAGAACATCGACGAACGAATGGTAGAGCTCCAAGTACGCGCCCGTTCGGTACATTCCATTNAGCGTTCGTCAGCGGATCGGAAAGCTCGTTACGAGAGGTAAGCGGGCAAATGGCAGGACGAGCAGCCAGATGCGTTCGATGTCTTGCTACTTTCAACAACGGTGCTTGCGTTCGAGACCAGTATGTAANAGGAGNTTTACCTGGTCCGCNTCGCGATACTCACTTGGACCGGGCAGCGGAAAGGGCGTACACACAAACCATTGCCTTTGGNACCCGGTGCAGTCGTTTGANGCGTGCATTCGGAAACCTGCTGGAACAGNTCGCGGATNCGGN]
consensusID : consensus_2132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence
[CCTGGCCGCTCGAGCAGGACGTGGAACGGCTCGGTGAGGTGTGGCGCGATGTGGAATACGAAAGATTGCTAGCATAGGCTGTGGTACTGGTTTGCTTGAGTGGATCATCGACTGTGCAAATGAGGCTATCAGTGTAATCGGTATAGAAATCGACGAAGAATGGTGGAGCTCCAAGTACGCACCCGTTCGGTACATTCCATTAGCGTTCGTCAGCGGATCGGAAAGCTCGTTACGAGAGGTAACGGCCAAATGGCAGGACGAGCAGCCAGATGTGTTGATGTTTTGCTACTTCAACAACGGTGCTGCGTTCGAGCAGTATGTAAAGGAGTTTACCGGTCGTTTCGTGATACTAATTGGACCGGGCCAGGGAAAGGGCGTACACACAAACCCATTGCCTTTGGCACCCGGTGAGTCGTTTGAGCGTGATTGGAAACTGCTGGAACAGTTCGCGATCGGAAGCGAAAATGTCAATTGCATTGCCATCTATGAGCGAACAAAGTTATAAACCGTGTAAAGCACAATTTACTATACAAATATAATGTGAACAAAATTATACGAGCAGCATATTGCTGACGAA]
[-] EMBL CNS09MXD [CCTGGCCGCTCGAGCAGGACGTGGAACGGCTCGGTGAGGTGTGGCGCGATGTGGAATACGAAAGATTGCTAGCATAGGCTGTGGTACTGGTTTGCTTGAGTGGATCATCGACTGTGCAAATGAGGCTATCAGTGTAATCGGTATAGAAATCGACGAAGAATGGTGGAGCTCCAAGTACGCACCCGTTCGGTACATTCCATTAGCGTTCGTCAGCGGATCGGAAAGCTCGTTACGAGAGGTAACGGCCAAATGGCAGGACGAGCAGCCAGATGTGTTGATGTTTTGCTACTTCAACAACGGTGCTGCGTTCGAGCAGTATGTAAAGGAGTTTACCGGTCGTTTCGTGATACTAATTGGACCGGGCCAGGGAAAGGGCGTACACACAAACCCATTGCCTTTGGCACCCGGTGAGTCGTTTGAGCGTGATTGGAAACTGCTGGAACAGTTCGCGATCGGAAGCGAAAATGTCAATTGCATTGCCATCTATGAGCGAACAAAGTTATAAACCGTGTAAAGCACAATTTACTATACAAATATAATGTGAACAAAATTATACGAGCAGCATATTGCTGACGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2132#0 ATCCCCCGAGGTTATAATCGATTGGAAACGGTCACTAAACCCGGAACCATGCTTGATCGA 60
consensus_2132#1 ------------------------------------------------------------
consensus_2132#0 CNAAACGGCAAACGTGGATAGCAAGATCAACAGTTGATTGTGAGTTTTATGAAAACGAAA 120
consensus_2132#1 ------------------------------------------------------------
consensus_2132#0 TAAGTGGCGCAAAATACTCGAACTCGGACAAGAATTAGCTCCCGCGCAACGTTCCAACCT 180
consensus_2132#1 ------------------------------------------------------------
consensus_2132#0 CCTCTGGGCCTGGCCGCTCGAGCAGGACGTGGAACGNGNCTCGNGTGAGGTGCTGGCGCG 240
consensus_2132#1 --------CCTGGCCGCTCGAGCAGGACGTGGAACGGCTC---GGTGAGGTG-TGGCGCG 48
**************************** * ******** *******
consensus_2132#0 ATGTGGAATACGAAATATTTGCTAGCATAGGCTTGTGGTACTTGGTTTGCTTGAGTGGAT 300
consensus_2132#1 ATGTGGAATACGAAAGATT-GCTAGCATAGGCT-GTGGTACT-GGTTTGCTTGAGTGGAT 105
*************** *** ************* ******** *****************
consensus_2132#0 CATCGGACTGTGCAAATGAGGCTTATCAGTGTAATCGGGTATAGAACATCGACGAACGAA 360
consensus_2132#1 CATCG-ACTGTGCAAATGAGGCT-ATCAGTGTAATCGG-TATAGAA-ATCGACGAA-GAA 160
***** ***************** ************** ******* ********* ***
consensus_2132#0 TGGTAGAGCTCCAAGTACGCGCCCGTTCGGTACATTCCATTNAGCGTTCGTCAGCGGATC 420
consensus_2132#1 TGGTGGAGCTCCAAGTACGCACCCGTTCGGTACATTCCATTA-GCGTTCGTCAGCGGATC 219
**** *************** ******************** *****************
consensus_2132#0 GGAAAGCTCGTTACGAGAGGTAAGCGGGCAAATGGCAGGACGAGCAGCCAGATGCGTTCG 480
consensus_2132#1 GGAAAGCTCGTTACGAGAGGTAA-CGGCCAAATGGCAGGACGAGCAGCCAGATGTGTT-G 277
*********************** *** ************************** *** *
consensus_2132#0 ATGTCTTGCTACTTTCAACAACGGTGCTTGCGTTCGAGACCAGTATGTAANAGGAGNTTT 540
consensus_2132#1 ATGTTTTGCTACTT-CAACAACGGTGCT-GCGTTCGAG--CAGTATGTAAAGGA--GTTT 331
**** ********* ************* ********* ********** * ***
consensus_2132#0 ACCTGGTCCGCNTCGCGATACTCACTTGGACCGGGCAGCGGAAAGGGCGTACACACAAAC 600
consensus_2132#1 ACCGG--TCGTTTCGTGATACT-AATTGGACCGGGCCAGGGAAAGGGCGTACACACAAAC 388
*** * ** *** ****** * *********** *********************
consensus_2132#0 C-ATTGCCTTTGGNACCCGGTGCAGTCGTTTGANGCGTGCATTCGGAAACCTGCTGGAAC 659
consensus_2132#1 CCATTGCCTTTGGCACCCGGTG-AGTCGTTTGAG---CGTGATTGGAAAC-TGCTGGAAC 443
* *********** ******** ********** * * ****** *********
consensus_2132#0 AGNTCGCGGATNCGGN-------------------------------------------- 675
consensus_2132#1 AGTTCGCGATCGGAAGCGAAAATGTCAATTGCATTGCCATCTATGAGCGAACAAAGTTAT 503
** *****
consensus_2132#0 ------------------------------------------------------------
consensus_2132#1 AAACCGTGTAAAGCACAATTTACTATACAAATATAATGTGAACAAAATTATACGAGCAGC 563
consensus_2132#0 --------------
consensus_2132#1 ATATTGCTGACGAA 577
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||