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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2150#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 819 fasta sequence
[ATCGCCGCGGTTAATTGAGTATTTACAAAAAATCNGTAAAACAAAAAAATAGAAAACTTTTCAAGAAAATGCGAGACAAGTAGTAGTAGTTCTCATCTAGGGCCAGTAGTGGCAATCGAGTAGCGGCAAAATTTCTGGGAATACATATTGCGACGAACACTAGTTAAATACGGACAAGGTACAGTTTGAACGGCAGCACTATCTACCATTGCAGCGTACTCCAACGTGTACATTTCTGATGAGGTCACACGTGCTGACAAAACTATCCGGTCCCCACGGNGTCACGAATCCTTTGGCTTGGATTCCTGGGACACCCGCAGACACACACTTGAAANTATTATCCTATCCCACTGCAACGCTCACGCTATGAGCTATCCCTATGGTATCCATCACACCACGGGGACAAAACGAACATGACANATACCATCCCCTGGGGGGGACACAACACCACGACAACCGGCCGGGGCCCAAAACAAAAAATAGCGAGGCGCACCCCGNGAATGNCGGCGACGTAAAGTCAAANGCAACACAATAGGGAAACACACTCNGNCGGCCCTAGGACAACACCANCGGCCGAGGGGAACAGCACCAACGCAACAANCGGACAAGCNGAAACGCNGGGGACAGCACCCACCGGACCCGAACAACATAGGGGTTCGGGCAAAACAGACGGGCNNNTTGGTTGGACCCGACGGTANACANGGGCCANAACAGCGGGAATAGCCACCAAACCNTCAGGNCNGTGGACAGACCATCCAGACACCACACCAGCACGACAGAACAACGAGGCNAAACCCCACNGNGGCGTCCAANNGAGCN]
[+] EMBL AL696232 [ATCGCCGCGGTTAATTGAGTATTTACAAAAAATCNGTAAAACAAAAAAATAGAAAACTTTTCAAGAAAATGCGAGACAAGTAGTAGTAGTTCTCATCTAGGGCCAGTAGTGGCAATCGAGTAGCGGCAAAATTTCTGGGAATACATATTGCGACGAACACTAGTTAAATACGGACAAGGTACAGTTTGAACGGCAGCACTATCTACCATTGCAGCGTACTCCAACGTGTACATTTCTGATGAGGTCACACGTGCTGACAAAACTATCCGGTCCCCACGGNGTCACGAATCCTTTGGCTTGGATTCCTGGGACACCCGCAGACACACACTTGAAANTATTATCCTATCCCACTGCAACGCTCACGCTATGAGCTATCCCTATGGTATCCATCACACCACGGGGACAAAACGAACATGACANATACCATCCCCTGGGGGGGACACAACACCACGACAACCGGCCGGGGCCCAAAACAAAAAATAGCGAGGCGCACCCCGNGAATGNCGGCGACGTAAAGTCAAANGCAACACAATAGGGAAACACACTCNGNCGGCCCTAGGACAACACCANCGGCCGAGGGGAACAGCACCAACGCAACAANCGGACAAGCNGAAACGCNGGGGACAGCACCCACCGGACCCGAACAACATAGGGGTTCGGGCAAAACAGACGGGCNNNTTGGTTGGACCCGACGGTANACANGGGCCANAACAGCGGGAATAGCCACCAAACCNTCAGGNCNGTGGACAGACCATCCAGACACCACACCAGCACGACAGAACAACGAGGCNAAACCCCACNGNGGCGTCCAANNGAGCN]
consensusID : consensus_2150#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[CCGGAAGGAAGGAAAATTATAAGTCAGTCTAAATTATTGAGTATTTAAAAAAAATAGTAAAACCAAAAAAAAAGAAAACTTTTCAAGAAAATGCGAGAAATAGTAGTGTTTCATCTGGGCCAGTGTGGCAATCGAGTAGCGGAAAATTTCTGGGAATACATTTGCGACGAACACTGTTTAAATACGGAAGGTCAGTTTGAAGGGCAGCACTATCTACCATTGCAGCGTATCAACGTGTATTTTGATGAGTCACCGTGCTGCAACTTCGTCCCACGGTCGATCTTTGCTGATCTGGAACCGAGCACATTGAATTATCTTCGCTGCAGTCGCTATGGTTCCTTGTTCTCCCCGGAAAGCTTCATCTCTGGGAAAACGAGCGCGGGCAACAATTGGGCCCGTGGTTATCACACTGAAGGGGCTGAACTGCTGGACCAGATTGAGGACTGCACCCGCCGAATGGTGGAAGGGTGTGACTGTCTGCAAGGTTTCCAACTGGTGCACTCGATCGGTGGCGGTACCGGCTCTGGACTGGGAACGCTACTGCTGGAAAACTTGAAGGATCACTTTCCGGGGAAGATCACGAACACGTTCAGCGTTATTCCTTCGCCGAAAGTATCGGAGGTCGTGGTGGAACCGTACAATGCTGTATTTGCACTCAGCTCTATGATACGT]
[+] EMBL BM636336 [CCGGAAGGAAGGAAAATTATAAGTCAGTCTAAATTATTGAGTATTTAAAAAAAATAGTAAAACCAAAAAAAAAGAAAACTTTTCAAGAAAATGCGAGAAATAGTAGTGTTTCATCTGGGCCAGTGTGGCAATCGAGTAGCGGAAAATTTCTGGGAATACATTTGCGACGAACACTGTTTAAATACGGAAGGTCAGTTTGAAGGGCAGCACTATCTACCATTGCAGCGTATCAACGTGTATTTTGATGAGTCACCGTGCTGCAACTTCGTCCCACGGTCGATCTTTGCTGATCTGGAACCGAGCACATTGAATTATCTTCGCTGCAGTCGCTATGGTTCCTTGTTCTCCCCGGAAAGCTTCATCTCTGGGAAAACGAGCGCGGGCAACAATTGGGCCCGTGGTTATCACACTGAAGGGGCTGAACTGCTGGACCAGATTGAGGACTGCACCCGCCGAATGGTGGAAGGGTGTGACTGTCTGCAAGGTTTCCAACTGGTGCACTCGATCGGTGGCGGTACCGGCTCTGGACTGGGAACGCTACTGCTGGAAAACTTGAAGGATCACTTTCCGGGGAAGATCACGAACACGTTCAGCGTTATTCCTTCGCCGAAAGTATCGGAGGTCGTGGTGGAACCGTACAATGCTGTATTTGCACTCAGCTCTATGATACGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2150#0 ----------------------ATCGCCGCGGTTAATTGAGTATTTACAAAAAATCNGTA 38
consensus_2150#1 CCGGAAGGAAGGAAAATTATAAGTCAGTCTAAATTATTGAGTATTTAAAAAAAATAGTAA 60
** * ************ ******* *
consensus_2150#0 AAACAAAAAAATAGAAAACTTTTCAAGAAAATGCGAGACAAGTAGTAGTAGTTCTCATCT 98
consensus_2150#1 AACCAAAAAAAAAGAAAACTTTTCAAGAAAATGCGAGA--AATAGTAGTG--TTTCATCT 116
** ******** ************************** * ******* * ******
consensus_2150#0 AGGGCCAGTAGTGGCAATCGAGTAGCGGCAAAATTTCTGGGAATACATATTGCGACGAAC 158
consensus_2150#1 -GGGCCAGT-GTGGCAATCGAGTAGCGG-AAAATTTCTGGGAATACAT-TTGCGACGAAC 172
******** ****************** ******************* ***********
consensus_2150#0 ACTAGTTAAATACGGACAAGGTACAGTTTGAACGGCAGCACTATCTACCATTGCAGCGTA 218
consensus_2150#1 ACTGTTTAAATACGGA--AGGT-CAGTTTGAAGGGCAGCACTATCTACCATTGCAGCGTA 229
*** *********** **** ********* ***************************
consensus_2150#0 CTCCAACGTGTACATTTCTGATGAGGTCACACGTGCTGACAAAACTATCCGGTCCCCACG 278
consensus_2150#1 T--CAACGTGTA---TTTTGATGAG-TCAC-CGTGCTG-CAACTTCGTC------CCACG 275
********* ** ******* **** ******* *** ** *****
consensus_2150#0 GNGTCACGAATCCTTTGGCTTGGATTCCTGGGACACCCGCAGACACACACTTGAAANTAT 338
consensus_2150#1 GTC-----GATCTTT--GCT--GAT--CTGGAAC-----CGAGCACA---TTGAA----T 312
* *** ** *** *** **** ** * **** ***** *
consensus_2150#0 TATCCTATCCCACTGCAA-CGCTCACGCTATGAGCTATCCCTATGGTATCCATCACACCA 397
consensus_2150#1 TATCTT----CGCTGCAGTCGCTATGGTTCCTTGTTCTCCCC--GGAAAGCTTCATCTCT 366
**** * * ***** **** * * * * **** ** * * *** *
consensus_2150#0 CGGGGACAAAACGAACATGACANATACCATCCCCTGGGGGGGACACAACACCACGACAAC 457
consensus_2150#1 GGG----AAAACGAGCGCGGGCAACAATTGGGCCCGTGGTTATCACACTG-------AAG 415
** ******* * * * * ** * ** **** **
consensus_2150#0 CGGCCGGGGCCCAAAACAAAAAATAGCGAGGCGCACCCCGNGAATGNCGGCGACGTAAAG 517
consensus_2150#1 GGGCTGAACTGCTGGACCAGA--TTGAGGACTGCACCCGCCGAATGGTGGAAGGGTGTGA 473
*** * * ** * * * * * ****** ***** ** **
consensus_2150#0 TCAAANGCAACACAATAGGGAAACACACTCNGNCGGCCCTAGGACAACACCANCGGCCGA 577
consensus_2150#1 CTGTCTGCAAGGTTTCCAACTGGTGCACTCGATCGGT-----GGCGGTACCGGCTCTGGA 528
**** ***** *** * * *** * **
consensus_2150#0 G-GGGAACAGCACCAACGCAACAANCGGACAAGCNGAAACGCNGGGGACAGCACCCACCG 636
consensus_2150#1 CTGGGAACGCTACTGCTGGAA-AACTTGAAGGATCACTTTCCGGGGAAGATCAC-----G 582
****** ** * ** ** ** * *** * * *** *
consensus_2150#0 GACCCGAACAACATAGGGGTTCGGGCAAAACAGACGGGCNNNTTGGTTGGACCCGACGGT 696
consensus_2150#1 AACACGTTCAGCGTTATTCCTTCGCCGAAAGTATCGGAGGTCGTGGTGGAACCGTACAAT 642
** ** ** * * * * * *** *** **** * *** ** *
consensus_2150#0 AN-ACANGGGCCANAACAGCGGGAATAGCCACCAAACCNTCAGGNCNGTGGACAGACCAT 755
consensus_2150#1 GCTGTATTTGCACTCAGCTCTATGATACGT------------------------------ 672
* ** * * ***
consensus_2150#0 CCAGACACCACACCAGCACGACAGAACAACGAGGCNAAACCCCACNGNGGCGTCCAANNG 815
consensus_2150#1 ------------------------------------------------------------
consensus_2150#0 AGCN 819
consensus_2150#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||