cluster # 219

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Anopheles gambiae
cluster # 219 cluster # 219 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_219#0 length = 429 sequences # 1

consensus_219#1 length = 103 sequences # 1

consensusID : consensus_219#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence

                              [ACAGTCCCTACTACTGCTGCTTCGGCCCGAACTAAAGGAGGAGCTTGAACGGGAAGCTACACTCCGAAACCATCAACACTCGTGCCACACTCACAACCCCCCACGCGTCCGCGGACGCGTGGGCGATTACAGATTTCTGACATCCTGATTGTGATCAGCCGCTTGAATAAAATGAGGCCACCCAAGGCACAGGCACACACACGCATACGCAAACACATCCCTGGCAATGACCTTCCAGTGTTGACCGTACGGACATGCAATCGCGCTCTCGACAGCGTCGACGGTTCATCGTGTTTACACTAGCCGCGATCCGGCAGGGCGAGCGTTGCAATATTAAAATCGTTAAACCTTTTAAGCTCTTTCCCCTTTCCCCTTCCGTCGCTCGAAGCTCGAATAAATATTGACCCGCGTACGCCCTGTGCGTTCGGG]

[+] EMBL BM632986             [ACAGTCCCTACTACTGCTGCTTCGGCCCGAACTAAAGGAGGAGCTTGAACGGGAAGCTACACTCCGAAACCATCAACACTCGTGCCACACTCACAACCCCCCACGCGTCCGCGGACGCGTGGGCGATTACAGATTTCTGACATCCTGATTGTGATCAGCCGCTTGAATAAAATGAGGCCACCCAAGGCACAGGCACACACACGCATACGCAAACACATCCCTGGCAATGACCTTCCAGTGTTGACCGTACGGACATGCAATCGCGCTCTCGACAGCGTCGACGGTTCATCGTGTTTACACTAGCCGCGATCCGGCAGGGCGAGCGTTGCAATATTAAAATCGTTAAACCTTTTAAGCTCTTTCCCCTTTCCCCTTCCGTCGCTCGAAGCTCGAATAAATATTGACCCGCGTACGCCCTGTGCGTTCGGG]




>consensus_219#0
ACAGTCCCTACTACTGCTGCTTCGGCCCGAACTAAAGGAGGAGCTTGAACGGGAAGCTAC
ACTCCGAAACCATCAACACTCGTGCCACACTCACAACCCCCCACGCGTCCGCGGACGCGT
GGGCGATTACAGATTTCTGACATCCTGATTGTGATCAGCCGCTTGAATAAAATGAGGCCA
CCCAAGGCACAGGCACACACACGCATACGCAAACACATCCCTGGCAATGACCTTCCAGTG
TTGACCGTACGGACATGCAATCGCGCTCTCGACAGCGTCGACGGTTCATCGTGTTTACAC
TAGCCGCGATCCGGCAGGGCGAGCGTTGCAATATTAAAATCGTTAAACCTTTTAAGCTCT
TTCCCCTTTCCCCTTCCGTCGCTCGAAGCTCGAATAAATATTGACCCGCGTACGCCCTGT
GCGTTCGGG

consensusID : consensus_219#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 103
fasta sequence

                              [TCATAAGTTTCGTCATTAATGGAGGCGCTTTAGGGGATAGTAATAAATACAGAATTTTAATCGAAACATGGGACCATATACCAATTTTTCGAGTCACGAGCGC]

[+] EMBL CNS09BLZ             [TCATAAGTTTCGTCATTAATGGAGGCGCTTTAGGGGATAGTAATAAATACAGAATTTTAATCGAAACATGGGACCATATACCAATTTTTCGAGTCACGAGCGC]




>consensus_219#1
TCATAAGTTTCGTCATTAATGGAGGCGCTTTAGGGGATAGTAATAAATACAGAATTTTAA
TCGAAACATGGGACCATATACCAATTTTTCGAGTCACGAGCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_219#0      ACAGTCCCTACTACTGCTGCTTCGGCCCGAACTAAAGGAGGAGCTTGAACGGGAAGCTAC 60
consensus_219#1      ------------------------------------------------------------
                                                                                 

consensus_219#0      ACTCCGAAACCATCAACACTCGTGCCACACTCACAACCCCCCACGCGTCCGCGGACGCGT 120
consensus_219#1      ------------------------------------------------------------
                                                                                 

consensus_219#0      GGGCGATTACAGATTTCTGACATCCTGATTGTGATCAGCCGCTTGAATAAAATGAGGCCA 180
consensus_219#1      -------------------------------TCATAAGTTTCGTCATTAATG-GAGGCGC 28
                                                    * ** **   * * * ***   *****  

consensus_219#0      CCCAAGGCACAGGCACACACACGCATACGCAAACACATCCCTGGCAATGACCTTCCAGTG 240
consensus_219#1      TTTAGGGGATAGTAATAAATACAGAATTTTAATCGAAACATGGG--ACCATATACCAATT 86
                        * ** * **  * * * **  *     ** *  * *   **  *  *  * *** * 

consensus_219#0      TTGACCGT-ACGGACATGCAATCGCGCTCTCGACAGCGTCGACGGTTCATCGTGTTTACA 299
consensus_219#1      TTTCGAGTCACGAGCGC------------------------------------------- 103
                     **    ** ***  *                                             

consensus_219#0      CTAGCCGCGATCCGGCAGGGCGAGCGTTGCAATATTAAAATCGTTAAACCTTTTAAGCTC 359
consensus_219#1      ------------------------------------------------------------
                                                                                 

consensus_219#0      TTTCCCCTTTCCCCTTCCGTCGCTCGAAGCTCGAATAAATATTGACCCGCGTACGCCCTG 419
consensus_219#1      ------------------------------------------------------------
                                                                                 

consensus_219#0      TGCGTTCGGG 429
consensus_219#1      ----------