cluster # 2190

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Anopheles gambiae
cluster # 2190 cluster # 2190 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2190#0 length = 459 sequences # 1

consensus_2190#1 length = 419 sequences # 1

consensusID : consensus_2190#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence

                              [AAAAGAGAGAGAGGAAAATGTATTTAGTAGATGTGAAAACAACATTCCAAAATAAAATATTATGTACTCTAGTTTCTTGTATTTTGAATTGAGTATATCGACACTGCCTTTGGCCGGTTGCGTAGTACATTGTGCAGATCGTCGGACTTAACAACTTGCCCAGTTAAGGGTTCTAGTCCTTATGGTCTTTTCTGATGTGGATAATGATACAGGGTTTACCTAGCCAATCCAGCCATCGTAAAAGCGTCATTGGTCGCCTTAAATGCTCATTCAGGTGACATAAACCCTCAATTGGGCACTTTCATTTCTATTCGAGCCTTGTGAAGAATGGTCCAAACTTTTTGGTCGCATACTTCTTGATCGCATACTTCTTGGTCGCAAACTTCTGGATCGCATACTTCTTGGTCGCAAAGTTCTTGGTCGCAAACTTCTTGGTCGCACACTTCTTGATCGCAAACT]

[+] EMBL BX602215             [AAAAGAGAGAGAGGAAAATGTATTTAGTAGATGTGAAAACAACATTCCAAAATAAAATATTATGTACTCTAGTTTCTTGTATTTTGAATTGAGTATATCGACACTGCCTTTGGCCGGTTGCGTAGTACATTGTGCAGATCGTCGGACTTAACAACTTGCCCAGTTAAGGGTTCTAGTCCTTATGGTCTTTTCTGATGTGGATAATGATACAGGGTTTACCTAGCCAATCCAGCCATCGTAAAAGCGTCATTGGTCGCCTTAAATGCTCATTCAGGTGACATAAACCCTCAATTGGGCACTTTCATTTCTATTCGAGCCTTGTGAAGAATGGTCCAAACTTTTTGGTCGCATACTTCTTGATCGCATACTTCTTGGTCGCAAACTTCTGGATCGCATACTTCTTGGTCGCAAAGTTCTTGGTCGCAAACTTCTTGGTCGCACACTTCTTGATCGCAAACT]




>consensus_2190#0
AAAAGAGAGAGAGGAAAATGTATTTAGTAGATGTGAAAACAACATTCCAAAATAAAATAT
TATGTACTCTAGTTTCTTGTATTTTGAATTGAGTATATCGACACTGCCTTTGGCCGGTTG
CGTAGTACATTGTGCAGATCGTCGGACTTAACAACTTGCCCAGTTAAGGGTTCTAGTCCT
TATGGTCTTTTCTGATGTGGATAATGATACAGGGTTTACCTAGCCAATCCAGCCATCGTA
AAAGCGTCATTGGTCGCCTTAAATGCTCATTCAGGTGACATAAACCCTCAATTGGGCACT
TTCATTTCTATTCGAGCCTTGTGAAGAATGGTCCAAACTTTTTGGTCGCATACTTCTTGA
TCGCATACTTCTTGGTCGCAAACTTCTGGATCGCATACTTCTTGGTCGCAAAGTTCTTGG
TCGCAAACTTCTTGGTCGCACACTTCTTGATCGCAAACT

consensusID : consensus_2190#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [AGACTTTTGCGACCAAGAAGTTTGCGACCAAGAAGTTTGCGACCAAGAAGATTGCGACCAATAAGATTGCGACCAAGACTTTGGCGACCAAGAAGTATGCGACCAAGAATTTTGCGACCAGGAATTTTGCGACCAAGAATTATGCGACCAAAAAGTTTGCGACCAAGAATTTTGCGAACATGAATTTTGCGACCAAGACTTTTGCAACCAAGAATTTTGCGACCAAGAAGTTTGCGACCAAGAAGTTTGCGACCAAGAAGTTTGCGACCAAAAATTTTGCGACCAAGAAGTTTGCGACCAGGAAGTTTGCGACCAAGAAGTTTGATCTTGGATCGTCATCCCACAGTCATAGTTTAGTTTACAACCCGAAAAATCAACAACTCATCAGATACCTAGACTCAAGAAATAGATTATAGAAA]

[+] EMBL BX605155             [AGACTTTTGCGACCAAGAAGTTTGCGACCAAGAAGTTTGCGACCAAGAAGATTGCGACCAATAAGATTGCGACCAAGACTTTGGCGACCAAGAAGTATGCGACCAAGAATTTTGCGACCAGGAATTTTGCGACCAAGAATTATGCGACCAAAAAGTTTGCGACCAAGAATTTTGCGAACATGAATTTTGCGACCAAGACTTTTGCAACCAAGAATTTTGCGACCAAGAAGTTTGCGACCAAGAAGTTTGCGACCAAGAAGTTTGCGACCAAAAATTTTGCGACCAAGAAGTTTGCGACCAGGAAGTTTGCGACCAAGAAGTTTGATCTTGGATCGTCATCCCACAGTCATAGTTTAGTTTACAACCCGAAAAATCAACAACTCATCAGATACCTAGACTCAAGAAATAGATTATAGAAA]




>consensus_2190#1
AGACTTTTGCGACCAAGAAGTTTGCGACCAAGAAGTTTGCGACCAAGAAGATTGCGACCA
ATAAGATTGCGACCAAGACTTTGGCGACCAAGAAGTATGCGACCAAGAATTTTGCGACCA
GGAATTTTGCGACCAAGAATTATGCGACCAAAAAGTTTGCGACCAAGAATTTTGCGAACA
TGAATTTTGCGACCAAGACTTTTGCAACCAAGAATTTTGCGACCAAGAAGTTTGCGACCA
AGAAGTTTGCGACCAAGAAGTTTGCGACCAAAAATTTTGCGACCAAGAAGTTTGCGACCA
GGAAGTTTGCGACCAAGAAGTTTGATCTTGGATCGTCATCCCACAGTCATAGTTTAGTTT
ACAACCCGAAAAATCAACAACTCATCAGATACCTAGACTCAAGAAATAGATTATAGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2190#0      AAAAGAGAGAGAGGAAAATGTATTTAGTAGATGTGAAAACAACATTCCAAAATAAAATAT 60
consensus_2190#1      ------------------------AGACTTTTGCGACCAAGAAGTTTGCGACCAAGAAGT 36
                                                     ** **  *  *  **    *  ** *  *

consensus_2190#0      TATGTACTCTAGTTTCTTGTATTTTGAATTGAGTATATCGACACTGCCTTTGGCCGGTTG 120
consensus_2190#1      T-TGCGACCAAGAAGATTGCGACC---AATAAG-ATTGCGACCAAGACTTTGGC-GACCA 90
                      * **    * **    ***        * * ** **  ****   * ******* *    

consensus_2190#0      CGTAGTACATTGTGCAGATCGTCGGACTTAACAACTTGCCCAGTTAAGGGTTCTAGTCCT 180
consensus_2190#1      AGAAGTATGCGACCAAGAATTTTGCGACCAGGAATTT-TGCGACCAAGAATTAT-GCGAC 148
                       * ****        ***   * *     *  ** **   *    ***  ** * *    

consensus_2190#0      TATGGTCTTTTCTGATGTGGATAATG-ATACAGGGTTTACCTAGCCAATCCAGCCATCGT 239
consensus_2190#1      CAAAAAGTTTGCGACCAAGAATTTTGCGAACATGAATTTTGCGACCAA---GACTTTTGC 205
                       *     *** *      * **  **   *** *  **      ****     *  * * 

consensus_2190#0      AAAAGCGTCATTGGTCGCCTTAAATGCTCATTCAGGTGACATAAACCCTCAATTGGGCAC 299
consensus_2190#1      AACCAAGAATTTTGCGACCAAGAA-----GTTTGCGACCAAGAAGTTTGCGACCAAGAAG 260
                      **    *   ** *   **   **      **   *    * **     * *    * * 

consensus_2190#0      TTTCATTTCTATTCGAGCCTTGTGAAGAATGGTCCAAACTTTTTGGTCGCATACTTCTTG 359
consensus_2190#1      TTTGCGACCAA---AAATTTTGCGACCAA-GAAGTTTGCGACCAGGAAGTTTGCGACCAA 316
                      ***     * *    *   *** **  ** *       *     **  *  * *  *   

consensus_2190#0      ATCGCATACTTCTTGGTCGCAAACTTCTGG--ATCGCATACTTCTTGGTCGCAAAGTTC- 416
consensus_2190#1      GAAGTTTGATCTTGGATCGTCATCCCACAGTCATAGTTTAGTTTACAACCCGAAAAATCA 376
                         *  *  *  * * ***  * *     *  ** *  ** **      *  ***  ** 

consensus_2190#0      -TTGGTCGCAAACTTCTTGGTCGCACACTTCTTGATCGCAAACT 459
consensus_2190#1      ACAACTCATCAGATACCTAGACTCA-AGAAATAGATTATAGAAA 419
                           **   *  * * * * * ** *    * ***   * *