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Anopheles gambiae
cluster # 2198 cluster # 2198       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2198#0 length = 690 sequences # 1  
consensus_2198#1 length = 568 sequences # 1  

consensusID : consensus_2198#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence
                              [CCGCGGACGCGTGGGCTGGGCTGGCTGGCGGAGGCCGCGCACAGATCGCGTGCGTGATTTATTTACCATTTTAATTGACTCCTGTTGACCTTTTTTCTCCGTTTTCGCTTTCTCGCGTTCTAGACAAGCGTGTGTACGCGTTTGGTGTTCCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCGCCCCAGGTGTGAAAACAACAGCGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTCTGTGTGTGTTTGTGCGCTACCCTTGCGGGGAAAGAACATTGCCAGCCCCCCTCCCCTTCCCGGTCAAAGGATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGATGGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTCGTTCGCGCTGGCTTGCGCAAGCCTGTCCACGCTCGACCCGAGTGATCGCATTACGGTCCAGAAAGGTGCGCTGCTTATCAGCTTAGGGTTCGTGTACTTTGTCGCCCTTACCGAGTTTCTCAACCAGCTGCTGCTGCGGACGACCATCGGGCACAGCTTCGTCAAGCGGTACCGGTTACGCGTATCGGACGTGCTGGACATCACGAACAAGCTCGTGTCCGCCGTGCAGGCCGCCTTTTCCTGCATCGCCGGGCTGTTCGTGTGCCGCT]

[+] EMBL BM599563             [CCGCGGACGCGTGGGCTGGGCTGGCTGGCGGAGGCCGCGCACAGATCGCGTGCGTGATTTATTTACCATTTTAATTGACTCCTGTTGACCTTTTTTCTCCGTTTTCGCTTTCTCGCGTTCTAGACAAGCGTGTGTACGCGTTTGGTGTTCCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCGCCCCAGGTGTGAAAACAACAGCGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTCTGTGTGTGTTTGTGCGCTACCCTTGCGGGGAAAGAACATTGCCAGCCCCCCTCCCCTTCCCGGTCAAAGGATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGATGGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTCGTTCGCGCTGGCTTGCGCAAGCCTGTCCACGCTCGACCCGAGTGATCGCATTACGGTCCAGAAAGGTGCGCTGCTTATCAGCTTAGGGTTCGTGTACTTTGTCGCCCTTACCGAGTTTCTCAACCAGCTGCTGCTGCGGACGACCATCGGGCACAGCTTCGTCAAGCGGTACCGGTTACGCGTATCGGACGTGCTGGACATCACGAACAAGCTCGTGTCCGCCGTGCAGGCCGCCTTTTCCTGCATCGCCGGGCTGTTCGTGTGCCGCT]


>consensus_2198#0 CCGCGGACGCGTGGGCTGGGCTGGCTGGCGGAGGCCGCGCACAGATCGCGTGCGTGATTT ATTTACCATTTTAATTGACTCCTGTTGACCTTTTTTCTCCGTTTTCGCTTTCTCGCGTTC TAGACAAGCGTGTGTACGCGTTTGGTGTTCCTCCAGCAGTGTGAAAATGAACCAGCAGTA GCGCCCCAGGTGTGAAAACAACAGCGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTG TCTGTGTGTGTTTGTGCGCTACCCTTGCGGGGAAAGAACATTGCCAGCCCCCCTCCCCTT CCCGGTCAAAGGATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGA TGGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCT CGTTCGCGCTGGCTTGCGCAAGCCTGTCCACGCTCGACCCGAGTGATCGCATTACGGTCC AGAAAGGTGCGCTGCTTATCAGCTTAGGGTTCGTGTACTTTGTCGCCCTTACCGAGTTTC TCAACCAGCTGCTGCTGCGGACGACCATCGGGCACAGCTTCGTCAAGCGGTACCGGTTAC GCGTATCGGACGTGCTGGACATCACGAACAAGCTCGTGTCCGCCGTGCAGGCCGCCTTTT CCTGCATCGCCGGGCTGTTCGTGTGCCGCT



consensusID : consensus_2198#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence
                              [CAGCGCGTCCCTTTTCGGGAGAGAGGGAGAGAGAAGGCAGGGCAGGACAGGGCGACGGTTTACGACACACCTGTGGACGGGAAGAAAAGGCAGCGAGCAGTGGCGGCCACGGAGGAAACAACAGCACGGTCAGACAACACATACGCCTCAAATTTCGCGTCGTCATTTCTGTCCGGCAGACAAGTGTGTGTACGCGTTTGGTGTTGCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCGCCCCAGGTGTGAAAACAACAGCGGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTCTGTGTGTGTTTGTGCGCTACCCTTGCGCGGGAAAGAACATTGCCAGCCCCCCTCCCCTTCCCGGTCAAAGAATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGATGGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTCGTTCGCGCTGGCTTGCGCAACCTGATCCACGCTCGACCCGAGTGATCGCATTACGGTCCAGAAAGGTGCGCTGCTTATCAGCTTAGGGT]

[+] EMBL CNS09BNA             [CAGCGCGTCCCTTTTCGGGAGAGAGGGAGAGAGAAGGCAGGGCAGGACAGGGCGACGGTTTACGACACACCTGTGGACGGGAAGAAAAGGCAGCGAGCAGTGGCGGCCACGGAGGAAACAACAGCACGGTCAGACAACACATACGCCTCAAATTTCGCGTCGTCATTTCTGTCCGGCAGACAAGTGTGTGTACGCGTTTGGTGTTGCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCGCCCCAGGTGTGAAAACAACAGCGGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTCTGTGTGTGTTTGTGCGCTACCCTTGCGCGGGAAAGAACATTGCCAGCCCCCCTCCCCTTCCCGGTCAAAGAATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGATGGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTCGTTCGCGCTGGCTTGCGCAACCTGATCCACGCTCGACCCGAGTGATCGCATTACGGTCCAGAAAGGTGCGCTGCTTATCAGCTTAGGGT]


>consensus_2198#1 CAGCGCGTCCCTTTTCGGGAGAGAGGGAGAGAGAAGGCAGGGCAGGACAGGGCGACGGTT TACGACACACCTGTGGACGGGAAGAAAAGGCAGCGAGCAGTGGCGGCCACGGAGGAAACA ACAGCACGGTCAGACAACACATACGCCTCAAATTTCGCGTCGTCATTTCTGTCCGGCAGA CAAGTGTGTGTACGCGTTTGGTGTTGCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCGC CCCAGGTGTGAAAACAACAGCGGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTCT GTGTGTGTTTGTGCGCTACCCTTGCGCGGGAAAGAACATTGCCAGCCCCCCTCCCCTTCC CGGTCAAAGAATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGATG GTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTCG TTCGCGCTGGCTTGCGCAACCTGATCCACGCTCGACCCGAGTGATCGCATTACGGTCCAG AAAGGTGCGCTGCTTATCAGCTTAGGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2198#0      -------------------------------------------------------CCGCG 5
consensus_2198#1      CAGCGCGTCCCTTTTCGGGAGAGAGGGAGAGAGAAGGCAGGGCAGGACAGGGCGACGGTT 60
                                                                             * *  

consensus_2198#0      GACGCGTGGGCTG-GGCTGGCTGGCGGAGGCCGCGCACAGATCGCGTGCGTGATTTATTT 64
consensus_2198#1      TACGACACACCTGTGGACGGGAAGAAAAGGCAGCGAGCAG-TGGCGGCCACGGAGGAAAC 119
                       ***      *** **  **   *   **** ***  *** * ***  *  *    *   

consensus_2198#0      ACCATTTTAATT-GACTCCTGTTGACCTTTTTTCTCCGTTTTCGCTTTCTCGCGTTCTAG 123
consensus_2198#1      AACAGCACGGTCAGACAACACATACGCCTCAAATTTCGCGTCGTCATTTCTGTCCGGCAG 179
                      * **      *  ***  *   *   * *     * **  *   * **   *      **

consensus_2198#0      ACAAGCGTGTGTACGCGTTTGGTGTTCCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCG 183
consensus_2198#1      ACAAGTGTGTGTACGCGTTTGGTGTTGCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCG 239
                      ***** ******************** *********************************

consensus_2198#0      CCCCAGGTGTGAAAACAACAGCGG-TACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTC 242
consensus_2198#1      CCCCAGGTGTGAAAACAACAGCGGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTC 299
                      ************************ ***********************************

consensus_2198#0      TGTGTGTGTTTGTGCGCTACCCTTGCG-GGGAAAGAACATTGCCAGCCCCCCTCCCCTTC 301
consensus_2198#1      TGTGTGTGTTTGTGCGCTACCCTTGCGCGGGAAAGAACATTGCCAGCCCCCCTCCCCTTC 359
                      *************************** ********************************

consensus_2198#0      CCGGTCAAAGGATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGAT 361
consensus_2198#1      CCGGTCAAAGAATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGAT 419
                      ********** *************************************************

consensus_2198#0      GGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTC 421
consensus_2198#1      GGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTC 479
                      ************************************************************

consensus_2198#0      GTTCGCGCTGGCTTGCGCAAGCCTGTCCACGCTCGACCCGAGTGATCGCATTACGGTCCA 481
consensus_2198#1      GTTCGCGCTGGCTTGCGCAACCTGATCCACGCTCGACCCGAGTGATCGCATTACGGTCCA 539
                      ******************** *   ***********************************

consensus_2198#0      GAAAGGTGCGCTGCTTATCAGCTTAGGGTTCGTGTACTTTGTCGCCCTTACCGAGTTTCT 541
consensus_2198#1      GAAAGGTGCGCTGCTTATCAGCTTAGGGT------------------------------- 568
                      *****************************                               

consensus_2198#0      CAACCAGCTGCTGCTGCGGACGACCATCGGGCACAGCTTCGTCAAGCGGTACCGGTTACG 601
consensus_2198#1      ------------------------------------------------------------
                                                                                  

consensus_2198#0      CGTATCGGACGTGCTGGACATCACGAACAAGCTCGTGTCCGCCGTGCAGGCCGCCTTTTC 661
consensus_2198#1      ------------------------------------------------------------
                                                                                  

consensus_2198#0      CTGCATCGCCGGGCTGTTCGTGTGCCGCT 690
consensus_2198#1      -----------------------------
                                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)