These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2198#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [CCGCGGACGCGTGGGCTGGGCTGGCTGGCGGAGGCCGCGCACAGATCGCGTGCGTGATTTATTTACCATTTTAATTGACTCCTGTTGACCTTTTTTCTCCGTTTTCGCTTTCTCGCGTTCTAGACAAGCGTGTGTACGCGTTTGGTGTTCCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCGCCCCAGGTGTGAAAACAACAGCGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTCTGTGTGTGTTTGTGCGCTACCCTTGCGGGGAAAGAACATTGCCAGCCCCCCTCCCCTTCCCGGTCAAAGGATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGATGGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTCGTTCGCGCTGGCTTGCGCAAGCCTGTCCACGCTCGACCCGAGTGATCGCATTACGGTCCAGAAAGGTGCGCTGCTTATCAGCTTAGGGTTCGTGTACTTTGTCGCCCTTACCGAGTTTCTCAACCAGCTGCTGCTGCGGACGACCATCGGGCACAGCTTCGTCAAGCGGTACCGGTTACGCGTATCGGACGTGCTGGACATCACGAACAAGCTCGTGTCCGCCGTGCAGGCCGCCTTTTCCTGCATCGCCGGGCTGTTCGTGTGCCGCT] [+] EMBL BM599563 [CCGCGGACGCGTGGGCTGGGCTGGCTGGCGGAGGCCGCGCACAGATCGCGTGCGTGATTTATTTACCATTTTAATTGACTCCTGTTGACCTTTTTTCTCCGTTTTCGCTTTCTCGCGTTCTAGACAAGCGTGTGTACGCGTTTGGTGTTCCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCGCCCCAGGTGTGAAAACAACAGCGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTCTGTGTGTGTTTGTGCGCTACCCTTGCGGGGAAAGAACATTGCCAGCCCCCCTCCCCTTCCCGGTCAAAGGATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGATGGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTCGTTCGCGCTGGCTTGCGCAAGCCTGTCCACGCTCGACCCGAGTGATCGCATTACGGTCCAGAAAGGTGCGCTGCTTATCAGCTTAGGGTTCGTGTACTTTGTCGCCCTTACCGAGTTTCTCAACCAGCTGCTGCTGCGGACGACCATCGGGCACAGCTTCGTCAAGCGGTACCGGTTACGCGTATCGGACGTGCTGGACATCACGAACAAGCTCGTGTCCGCCGTGCAGGCCGCCTTTTCCTGCATCGCCGGGCTGTTCGTGTGCCGCT] consensusID : consensus_2198#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [CAGCGCGTCCCTTTTCGGGAGAGAGGGAGAGAGAAGGCAGGGCAGGACAGGGCGACGGTTTACGACACACCTGTGGACGGGAAGAAAAGGCAGCGAGCAGTGGCGGCCACGGAGGAAACAACAGCACGGTCAGACAACACATACGCCTCAAATTTCGCGTCGTCATTTCTGTCCGGCAGACAAGTGTGTGTACGCGTTTGGTGTTGCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCGCCCCAGGTGTGAAAACAACAGCGGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTCTGTGTGTGTTTGTGCGCTACCCTTGCGCGGGAAAGAACATTGCCAGCCCCCCTCCCCTTCCCGGTCAAAGAATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGATGGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTCGTTCGCGCTGGCTTGCGCAACCTGATCCACGCTCGACCCGAGTGATCGCATTACGGTCCAGAAAGGTGCGCTGCTTATCAGCTTAGGGT] [+] EMBL CNS09BNA [CAGCGCGTCCCTTTTCGGGAGAGAGGGAGAGAGAAGGCAGGGCAGGACAGGGCGACGGTTTACGACACACCTGTGGACGGGAAGAAAAGGCAGCGAGCAGTGGCGGCCACGGAGGAAACAACAGCACGGTCAGACAACACATACGCCTCAAATTTCGCGTCGTCATTTCTGTCCGGCAGACAAGTGTGTGTACGCGTTTGGTGTTGCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCGCCCCAGGTGTGAAAACAACAGCGGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTCTGTGTGTGTTTGTGCGCTACCCTTGCGCGGGAAAGAACATTGCCAGCCCCCCTCCCCTTCCCGGTCAAAGAATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGATGGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTCGTTCGCGCTGGCTTGCGCAACCTGATCCACGCTCGACCCGAGTGATCGCATTACGGTCCAGAAAGGTGCGCTGCTTATCAGCTTAGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2198#0 -------------------------------------------------------CCGCG 5 consensus_2198#1 CAGCGCGTCCCTTTTCGGGAGAGAGGGAGAGAGAAGGCAGGGCAGGACAGGGCGACGGTT 60 * * consensus_2198#0 GACGCGTGGGCTG-GGCTGGCTGGCGGAGGCCGCGCACAGATCGCGTGCGTGATTTATTT 64 consensus_2198#1 TACGACACACCTGTGGACGGGAAGAAAAGGCAGCGAGCAG-TGGCGGCCACGGAGGAAAC 119 *** *** ** ** * **** *** *** * *** * * * consensus_2198#0 ACCATTTTAATT-GACTCCTGTTGACCTTTTTTCTCCGTTTTCGCTTTCTCGCGTTCTAG 123 consensus_2198#1 AACAGCACGGTCAGACAACACATACGCCTCAAATTTCGCGTCGTCATTTCTGTCCGGCAG 179 * ** * *** * * * * * ** * * ** * ** consensus_2198#0 ACAAGCGTGTGTACGCGTTTGGTGTTCCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCG 183 consensus_2198#1 ACAAGTGTGTGTACGCGTTTGGTGTTGCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCG 239 ***** ******************** ********************************* consensus_2198#0 CCCCAGGTGTGAAAACAACAGCGG-TACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTC 242 consensus_2198#1 CCCCAGGTGTGAAAACAACAGCGGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTC 299 ************************ *********************************** consensus_2198#0 TGTGTGTGTTTGTGCGCTACCCTTGCG-GGGAAAGAACATTGCCAGCCCCCCTCCCCTTC 301 consensus_2198#1 TGTGTGTGTTTGTGCGCTACCCTTGCGCGGGAAAGAACATTGCCAGCCCCCCTCCCCTTC 359 *************************** ******************************** consensus_2198#0 CCGGTCAAAGGATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGAT 361 consensus_2198#1 CCGGTCAAAGAATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGAT 419 ********** ************************************************* consensus_2198#0 GGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTC 421 consensus_2198#1 GGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTC 479 ************************************************************ consensus_2198#0 GTTCGCGCTGGCTTGCGCAAGCCTGTCCACGCTCGACCCGAGTGATCGCATTACGGTCCA 481 consensus_2198#1 GTTCGCGCTGGCTTGCGCAACCTGATCCACGCTCGACCCGAGTGATCGCATTACGGTCCA 539 ******************** * *********************************** consensus_2198#0 GAAAGGTGCGCTGCTTATCAGCTTAGGGTTCGTGTACTTTGTCGCCCTTACCGAGTTTCT 541 consensus_2198#1 GAAAGGTGCGCTGCTTATCAGCTTAGGGT------------------------------- 568 ***************************** consensus_2198#0 CAACCAGCTGCTGCTGCGGACGACCATCGGGCACAGCTTCGTCAAGCGGTACCGGTTACG 601 consensus_2198#1 ------------------------------------------------------------ consensus_2198#0 CGTATCGGACGTGCTGGACATCACGAACAAGCTCGTGTCCGCCGTGCAGGCCGCCTTTTC 661 consensus_2198#1 ------------------------------------------------------------ consensus_2198#0 CTGCATCGCCGGGCTGTTCGTGTGCCGCT 690 consensus_2198#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||