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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1133 fasta sequence
[TCAGCAGAATCCCGCGGTTAAAGGACGACAACGCTTTTAGACAGTGGACAGGAACGTGTTTGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTTAACTAGACGTTTAAGTGAAGTGTGCAAGCCGATAAAGCATGCAATACAGAAATGCGCCTTATTTTTCACGATACACAATAACAAACAGCTTTTCCAAGACAGGATTCACTGCGGATGGAGATACTTTGAACGCGTAAAGGGTTGGTCCCGTGCACATTTGCTNGTGGATTGAANTTTAGTATTTTTCATANAGCTCCCCACATGGCTTTAACACGATGNANTGACCGACGACGATTTATCGCCNACAACAAAAAACAACCACAATCTAACAAAGTTCAACCCAAAGGGCACTATTAACACGGTGCACACTTGNGGCAAAATAAACGTCTCCGGGAACTAAGCCACNCACTAATTTAAAGGTGTCCNGNGTTACCGACCACAATNGTTACTNATTCTNCAGCATTCAACATTAGGGANTNTTCCCTTCCANCCCCGTGTTNGCCNTNGGAGTCGTAGTAGTAGGTAGGCGGTCGTCATTAGTCGTNGGTAGGCCNTACCGTGGCCCCTATTGGAANATACAACGTTTCAGAGCGGAACTCCTNGNTTGNTNGCGGCTCGGTCGAGTATGTAGTTAATTAATAGCCGTAGNAACCGGCGTANAAGGCGTACTNGGGATCACAGGTGTGNGGAGATATCATTTATCNGCAAGACACACAGAACTCNTTAACGACAGGNAATTAGTCNTGAAANTCTAAACACACAAACATCNCGCACAACAACATCCCAACCTGTTGTAACTTACACAACCCTACATCCTTTTAACAACTAACTACTGCGTCTCACCAACCAAANCACNAAACACAAAATACAAATGACACAAATAATACCAAAACAAACTCAAAAATGATACNAAACAACAAAAANACTCAAAAAAAAACAANACATTATACCAANAAACNGGTCAAAAAAAAACACTGTAACCANATTACTTATTNCNAAAANCCCAANCTATCCAAANAAAATAAATTCACANGATCGCATCTACACAATAAAACTANANTCACCCCCCAACCTTATTACATTCAACAACACATCATA]
[+] EMBL AL696496 [TCAGCAGAATCCCGCGGTTAAAGGACGACAACGCTTTTAGACAGTGGACAGGAACGTGTTTGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTTAACTAGACGTTTAAGTGAAGTGTGCAAGCCGATAAAGCATGCAATACAGAAATGCGCCTTATTTTTCACGATACACAATAACAAACAGCTTTTCCAAGACAGGATTCACTGCGGATGGAGATACTTTGAACGCGTAAAGGGTTGGTCCCGTGCACATTTGCTNGTGGATTGAANTTTAGTATTTTTCATANAGCTCCCCACATGGCTTTAACACGATGNANTGACCGACGACGATTTATCGCCNACAACAAAAAACAACCACAATCTAACAAAGTTCAACCCAAAGGGCACTATTAACACGGTGCACACTTGNGGCAAAATAAACGTCTCCGGGAACTAAGCCACNCACTAATTTAAAGGTGTCCNGNGTTACCGACCACAATNGTTACTNATTCTNCAGCATTCAACATTAGGGANTNTTCCCTTCCANCCCCGTGTTNGCCNTNGGAGTCGTAGTAGTAGGTAGGCGGTCGTCATTAGTCGTNGGTAGGCCNTACCGTGGCCCCTATTGGAANATACAACGTTTCAGAGCGGAACTCCTNGNTTGNTNGCGGCTCGGTCGAGTATGTAGTTAATTAATAGCCGTAGNAACCGGCGTANAAGGCGTACTNGGGATCACAGGTGTGNGGAGATATCATTTATCNGCAAGACACACAGAACTCNTTAACGACAGGNAATTAGTCNTGAAANTCTAAACACACAAACATCNCGCACAACAACATCCCAACCTGTTGTAACTTACACAACCCTACATCCTTTTAACAACTAACTACTGCGTCTCACCAACCAAANCACNAAACACAAAATACAAATGACACAAATAATACCAAAACAAACTCAAAAATGATACNAAACAACAAAAANACTCAAAAAAAAACAANACATTATACCAANAAACNGGTCAAAAAAAAACACTGTAACCANATTACTTATTNCNAAAANCCCAANCTATCCAAANAAAATAAATTCACANGATCGCATCTACACAATAAAACTANANTCACCCCCCAACCTTATTACATTCAACAACACATCATA]
consensusID : consensus_2203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[CAGAATCGGCACGNGGAGAAAACAAAAAAATAACAACAACAGTGTCGACGTTGTAGTGCCTCAAGCAGCTTGTAACAGACTAATAGATGTTTTGCAAATGTTACATTTTGACAAAGAAAGGAGATGCACTTCTCTCTGCCTTGAACACAATTGTGCCACCGCGAATGCGAAAAGAAAACGGAACGGAAACGGTTCGGCCTTCATTGGATGAAACGAAAAACGAAAAGGACGACAAACGCTTTTAGACAGTGGACAGGAACGTGTTTGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTTAACTAGACGTTTAAGTGAATGTGCAAGCCGATAAAGCATGCAATACAGAAATGCGCCTTATTTTTCACGATACACAATAACAACAGCCTTTTCAAAGACAGGATTCATGCAGGATGGAGATACTTTGACGCGTAAAGGTGGTCCGTGCATTGCTGTGGATGAATTTATTTTTTCATAAGCTCCAAAATGCTTAACAGATGAGGACGACGAGATTAGCAAAAAAAAAACACAATTAAAGAGTTCACCAAGGCCATATTACAGGCAACTGGGAAATACGTCCGGACTAGGCAAACTATTAGTGTCGTGTTCGATTATGGTATTTCNAGCTAATTGATTCTCCTCATCCGNGTGCCTGTGTGTGTGTGTGCGTGTATGTGTG]
[+] EMBL BX468454 [CAGAATCGGCACGNGGAGAAAACAAAAAAATAACAACAACAGTGTCGACGTTGTAGTGCCTCAAGCAGCTTGTAACAGACTAATAGATGTTTTGCAAATGTTACATTTTGACAAAGAAAGGAGATGCACTTCTCTCTGCCTTGAACACAATTGTGCCACCGCGAATGCGAAAAGAAAACGGAACGGAAACGGTTCGGCCTTCATTGGATGAAACGAAAAACGAAAAGGACGACAAACGCTTTTAGACAGTGGACAGGAACGTGTTTGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTTAACTAGACGTTTAAGTGAATGTGCAAGCCGATAAAGCATGCAATACAGAAATGCGCCTTATTTTTCACGATACACAATAACAACAGCCTTTTCAAAGACAGGATTCATGCAGGATGGAGATACTTTGACGCGTAAAGGTGGTCCGTGCATTGCTGTGGATGAATTTATTTTTTCATAAGCTCCAAAATGCTTAACAGATGAGGACGACGAGATTAGCAAAAAAAAAACACAATTAAAGAGTTCACCAAGGCCATATTACAGGCAACTGGGAAATACGTCCGGACTAGGCAAACTATTAGTGTCGTGTTCGATTATGGTATTTCNAGCTAATTGATTCTCCTCATCCGNGTGCCTGTGTGTGTGTGTGCGTGTATGTGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2203#0 TCAGCAGAATCCCGCGGTTAAAGGACGACAACGCTTTTAGACAGTGGACAGGAACGTGTT 60
consensus_2203#1 ------------------------------------------------------------
consensus_2203#0 TGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTTAACTAGACGTTTAAGTGAAGTGTGC 120
consensus_2203#1 ------------------------------------------------------------
consensus_2203#0 AAGCCGATAAAGCATGCAATACAGAAATGCGCCTTATTTTTCACGATACACAATAACAAA 180
consensus_2203#1 ------------------------------------------------------------
consensus_2203#0 CAGCTTTTCCAAGACAGGATTCACTGCGGATGGAGATACTTTGAACGCGTAAAGGGTTGG 240
consensus_2203#1 ------------------------------------------------------------
consensus_2203#0 TCCCGTGCACATTTGCTNGTGGATTGAANTTTAGTATTTTTCATANAGCTCCCCACATGG 300
consensus_2203#1 ------------------------------------------------------------
consensus_2203#0 CTTTAACACGATGNANTGACCGACGACGATTTATCGCCNACAACAAAAAACAACCACAAT 360
consensus_2203#1 ------------------------------------------------------CAGAAT 6
** ***
consensus_2203#0 CTA-ACAAAGTTCAACCCAAAGGGCACTATTAACACGGTGCACACTTGNGGCAAAATAAA 419
consensus_2203#1 CGGCACGNGGAGAAAACAAAAAAATAACAACAACAGTGTCGACG-TTGTAGTGCCTCAAG 65
* ** * ** * *** * * **** ** ** *** * **
consensus_2203#0 CGTCTCCGGGAACTAAGCCACNCACTAATTTAAAGGTGTCCNGNGTTACCGACCACAATN 479
consensus_2203#1 CAGCTT---GTAACAGACTAATAGATGTTTTGCAAATGTTACATTTTGACAAAGAAAGGA 122
* ** * * * * * * *** * *** ** * * * *
consensus_2203#0 GTTACTNATTCTNCAGCATTCAACATTAGGGANTNTTCCCTTCCANCCCCGTGTTNGCCN 539
consensus_2203#1 GATGCACTTCTCTCTGCCTTGAACAC----AATTGTGCC------ACCGCGAATGCGAAA 172
* * * * * ** ** **** * * * ** ** ** * *
consensus_2203#0 TNGGAGTCGTAGTAGTAGGTAGGCGGTCGTCATTAGTCGTNGGTAGGCCNTACCGTGGCC 599
consensus_2203#1 -AGAAAACGGAACGGAAACGGTTCGGCCTTCATTGGATGAAACGAAAAACGAAAAGGACG 231
* * ** * * * *** * ***** * * * * * *
consensus_2203#0 CCTATTGGAAN-ATACAACGTTTCAGAGCGGAACTCCTNGNTTGNTNGCGGCTCGGTCGA 658
consensus_2203#1 ACAAACGCTTTTAGACAGTGGACAGGAACGTGTTTGGCCTTTTGCATA-AATGCCTTTGT 290
* * * * *** * ** ** * *** * * *
consensus_2203#0 GTATGTAGTTAATTAATAGCCGTAGNAACCGGCGTANAAGGCGTACTNGGGATCACAGGT 718
consensus_2203#1 TTTTGTTTTTAACT---AGACGTTTAAGTGAATGTGCAAGCCGA--TAAAGCATGCAA-- 343
* *** **** * ** *** * ** *** ** * * **
consensus_2203#0 GTGNGGAGATATCATTTATCNGCAAGACACACAGAACTCNTTAACGACAGGNAATTAGTC 778
consensus_2203#1 -TACAGAAATGCGCCTTATTTTT------CACGATACACAATAACAACAGCC------TT 390
* ** ** **** *** ** * **** **** *
consensus_2203#0 NTGAAANTCTAAACACACAAACATCNCGCACAACAACATCCCAACCTGTTGTAACTTACA 838
consensus_2203#1 TTCAAAGACAGGATTCATG------CAGGATGGAGATACTTTGACGCGTAAAGGTG---- 440
* *** * * ** * * * * ** **
consensus_2203#0 CAACCCTACATCCTTTTAACAACTAACTACTGCGTCTCACCAACCAAANCACNAAACACA 898
consensus_2203#1 -GTCCGTGCATTGCTGTGG-ATGAATTTATTTTTTCATAAGCTCCAAAATGCTTAACAGA 498
** * *** * * * * ** * ** * ***** * **** *
consensus_2203#0 AAATACAAATGACACAAATAATACCAAAACAAACTCAAAAATGATACNAAACAACAAAAA 958
consensus_2203#1 TGAGGACGACGAGATTAGCAAAAAAAAAACACAATTAAAGAGTTCACCAA--GGCCATAT 556
* * ** * * ** * ****** * * *** * ** ** * * *
consensus_2203#0 NACTCAAAAAAAAACAANACATT-ATACCAANAAACNGGTCAAAAAAAAACACTGTAACC 1017
consensus_2203#1 TACAGGCAACTGGGAAATACGTCCGGACTAGGCAAACTATTAGTGTCGTGTTCGATTATG 616
** ** ** ** * ** * ** * * * * *
consensus_2203#0 ANATTACTTATTNCNAAAANCCCAANCTATCCAAANAAAATAAATTCACANGATCGCATC 1077
consensus_2203#1 GTATTTCNAGCTAATTGATTCTC--CTCATCCGNGTGCC-TGTGTGTGTGTGTGCGTGTA 673
*** * * * * * **** * * * ** *
consensus_2203#0 TACACAATAAAACTANANTCACCCCCCAACCTTATTACATTCAACAACACATCATA 1133
consensus_2203#1 TGTGTG-------------------------------------------------- 679
*
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||