cluster # 2204

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Anopheles gambiae
cluster # 2204 cluster # 2204 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2204#0 length = 878 sequences # 1

consensus_2204#1 length = 568 sequences # 1

consensusID : consensus_2204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 878
fasta sequence

                              [CNAGCAGAATCCCGAGGTTTTATACCTAGCCGCAAATTGAAGATTCCGACGTCACACGACGTCCGGTTTAAGAGGTTACTCGACCAAGCGAACTTTTTTAGACGGGTTTTATGGGAAAAATTGTGGTAGATTTCCCAGGGTTGTTGTATCGAATAGCAGCCACAAAAAATATATTTTATGGATGGCTTTAAAAATATGAATCTTGCCCTCCCCCTTACTCCTTGCTGGTCGGTAGCTTGCGATCATACCAGCTGTTCATATCGCCTATCCGCTAAAAGGCGATTTTCGCCGCGATTTACGACTAGCGAAAACGTTTGTAANCTTCACGATTTGTATTGGAGCGAAGACACACAGCCAAAATTATGGTCACAAAAATTATGGGCCTGGGAAGGATTCATGGTTCTGACCTTCTGTTATCACATCTCGTCACAGACCGACAGAAATCTCCTGTCGCATTCTCACAAATCCCATCAGGGACTCCTACACGGAGTATATCTAGGATACGGTTAGGCATTGCATCCTTTTNCTTCGGCAACGTTGTAAGCGGAAGCTNCATATNCCTTTTCCTCCCCTTTTGGGTATATATTACCCCCGGTNGTTTGGTTTGCGCCCAATTCTAGGCGACGTTTGCCGGAAAAAGCCGCAATTCCACGGGTAATTTCCCTNTCCAATTTGCAACTTCCGAATCTAAAGGTCTTCAAACCCTTCAAAAAAGGNGCTTACAACAACTCTGGGTGNTAAGCAAAAGNAGCACCAAAGATAAAGCCTTCGTCTGGGGCCGACANACCCCAACAGACGTTGGCCTTNGGTCACCCCACAAATTCTACCGGGTAGGACCCCCNGCTNTCTATCAACTTTTAGGGCCCCAACAGATTTGG]

[+] EMBL AL696503             [CNAGCAGAATCCCGAGGTTTTATACCTAGCCGCAAATTGAAGATTCCGACGTCACACGACGTCCGGTTTAAGAGGTTACTCGACCAAGCGAACTTTTTTAGACGGGTTTTATGGGAAAAATTGTGGTAGATTTCCCAGGGTTGTTGTATCGAATAGCAGCCACAAAAAATATATTTTATGGATGGCTTTAAAAATATGAATCTTGCCCTCCCCCTTACTCCTTGCTGGTCGGTAGCTTGCGATCATACCAGCTGTTCATATCGCCTATCCGCTAAAAGGCGATTTTCGCCGCGATTTACGACTAGCGAAAACGTTTGTAANCTTCACGATTTGTATTGGAGCGAAGACACACAGCCAAAATTATGGTCACAAAAATTATGGGCCTGGGAAGGATTCATGGTTCTGACCTTCTGTTATCACATCTCGTCACAGACCGACAGAAATCTCCTGTCGCATTCTCACAAATCCCATCAGGGACTCCTACACGGAGTATATCTAGGATACGGTTAGGCATTGCATCCTTTTNCTTCGGCAACGTTGTAAGCGGAAGCTNCATATNCCTTTTCCTCCCCTTTTGGGTATATATTACCCCCGGTNGTTTGGTTTGCGCCCAATTCTAGGCGACGTTTGCCGGAAAAAGCCGCAATTCCACGGGTAATTTCCCTNTCCAATTTGCAACTTCCGAATCTAAAGGTCTTCAAACCCTTCAAAAAAGGNGCTTACAACAACTCTGGGTGNTAAGCAAAAGNAGCACCAAAGATAAAGCCTTCGTCTGGGGCCGACANACCCCAACAGACGTTGGCCTTNGGTCACCCCACAAATTCTACCGGGTAGGACCCCCNGCTNTCTATCAACTTTTAGGGCCCCAACAGATTTGG]




>consensus_2204#0
CNAGCAGAATCCCGAGGTTTTATACCTAGCCGCAAATTGAAGATTCCGACGTCACACGAC
GTCCGGTTTAAGAGGTTACTCGACCAAGCGAACTTTTTTAGACGGGTTTTATGGGAAAAA
TTGTGGTAGATTTCCCAGGGTTGTTGTATCGAATAGCAGCCACAAAAAATATATTTTATG
GATGGCTTTAAAAATATGAATCTTGCCCTCCCCCTTACTCCTTGCTGGTCGGTAGCTTGC
GATCATACCAGCTGTTCATATCGCCTATCCGCTAAAAGGCGATTTTCGCCGCGATTTACG
ACTAGCGAAAACGTTTGTAANCTTCACGATTTGTATTGGAGCGAAGACACACAGCCAAAA
TTATGGTCACAAAAATTATGGGCCTGGGAAGGATTCATGGTTCTGACCTTCTGTTATCAC
ATCTCGTCACAGACCGACAGAAATCTCCTGTCGCATTCTCACAAATCCCATCAGGGACTC
CTACACGGAGTATATCTAGGATACGGTTAGGCATTGCATCCTTTTNCTTCGGCAACGTTG
TAAGCGGAAGCTNCATATNCCTTTTCCTCCCCTTTTGGGTATATATTACCCCCGGTNGTT
TGGTTTGCGCCCAATTCTAGGCGACGTTTGCCGGAAAAAGCCGCAATTCCACGGGTAATT
TCCCTNTCCAATTTGCAACTTCCGAATCTAAAGGTCTTCAAACCCTTCAAAAAAGGNGCT
TACAACAACTCTGGGTGNTAAGCAAAAGNAGCACCAAAGATAAAGCCTTCGTCTGGGGCC
GACANACCCCAACAGACGTTGGCCTTNGGTCACCCCACAAATTCTACCGGGTAGGACCCC
CNGCTNTCTATCAACTTTTAGGGCCCCAACAGATTTGG

consensusID : consensus_2204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [CGCCCGAGGTCNACACATAGGCACACACACTGCTGCTGTGTTGTTGCACGGTGTTCGTGTAACTAATTATCTTTCCAAATTTCCCGTTTCATGCTTATAACCCTAGCCGCAAAATTGAAGATTTCCGACGTCCACACGACGTCCGGTTTAAGAGGTTACTCGACCAAGCGAACTTTTTTAGACGGGTTTTATGGGAAAAATCGTGGTAGATTTCCCAGGCTTGTTGTATCAAATAGCAGCCACAAAAAATATATCTTTATGGATGGCTTAAAAATATGAATCTTGCCCTCCCCCTTACTCCTTGCTGGTCGGTAGTTGCGATCATACCAGCTGTTCATATCCCTATCCGCAAAAGGCGATTTTCGCGCGCGATTTACGACCTAGTCGAAAACGTTCTGTTTTTTTCACGATTTCGTATGGAGCGAACGACACACACCCAAGATTATGGTCACAAATTATGGATGGGAAGATTATGGTTCTGACTTCTGTTTCACTCTCGCTCACAGAGCGACGATCTCCTGGTCGCATTCTCACAATCCCATCGGCTCTCACGCGCTCGCGCTCGNTG]

[+] EMBL AL931809             [CGCCCGAGGTCNACACATAGGCACACACACTGCTGCTGTGTTGTTGCACGGTGTTCGTGTAACTAATTATCTTTCCAAATTTCCCGTTTCATGCTTATAACCCTAGCCGCAAAATTGAAGATTTCCGACGTCCACACGACGTCCGGTTTAAGAGGTTACTCGACCAAGCGAACTTTTTTAGACGGGTTTTATGGGAAAAATCGTGGTAGATTTCCCAGGCTTGTTGTATCAAATAGCAGCCACAAAAAATATATCTTTATGGATGGCTTAAAAATATGAATCTTGCCCTCCCCCTTACTCCTTGCTGGTCGGTAGTTGCGATCATACCAGCTGTTCATATCCCTATCCGCAAAAGGCGATTTTCGCGCGCGATTTACGACCTAGTCGAAAACGTTCTGTTTTTTTCACGATTTCGTATGGAGCGAACGACACACACCCAAGATTATGGTCACAAATTATGGATGGGAAGATTATGGTTCTGACTTCTGTTTCACTCTCGCTCACAGAGCGACGATCTCCTGGTCGCATTCTCACAATCCCATCGGCTCTCACGCGCTCGCGCTCGNTG]




>consensus_2204#1
CGCCCGAGGTCNACACATAGGCACACACACTGCTGCTGTGTTGTTGCACGGTGTTCGTGT
AACTAATTATCTTTCCAAATTTCCCGTTTCATGCTTATAACCCTAGCCGCAAAATTGAAG
ATTTCCGACGTCCACACGACGTCCGGTTTAAGAGGTTACTCGACCAAGCGAACTTTTTTA
GACGGGTTTTATGGGAAAAATCGTGGTAGATTTCCCAGGCTTGTTGTATCAAATAGCAGC
CACAAAAAATATATCTTTATGGATGGCTTAAAAATATGAATCTTGCCCTCCCCCTTACTC
CTTGCTGGTCGGTAGTTGCGATCATACCAGCTGTTCATATCCCTATCCGCAAAAGGCGAT
TTTCGCGCGCGATTTACGACCTAGTCGAAAACGTTCTGTTTTTTTCACGATTTCGTATGG
AGCGAACGACACACACCCAAGATTATGGTCACAAATTATGGATGGGAAGATTATGGTTCT
GACTTCTGTTTCACTCTCGCTCACAGAGCGACGATCTCCTGGTCGCATTCTCACAATCCC
ATCGGCTCTCACGCGCTCGCGCTCGNTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2204#0      ------------------------------------------------------------
consensus_2204#1      CGCCCGAGGTCNACACATAGGCACACACACTGCTGCTGTGTTGTTGCACGGTGTTCGTGT 60
                                                                                  

consensus_2204#0      ----------CNAGCAGAATCCCGAGGTT-----TTATA--CCTAGCCGCAAA-TTGAAG 42
consensus_2204#1      AACTAATTATCTTTCCAAATTTCCCGTTTCATGCTTATAACCCTAGCCGCAAAATTGAAG 120
                                *   *  ***  *  * **     *****  ************ ******

consensus_2204#0      ATT-CCGACGTC-ACACGACGTCCGGTTTAAGAGGTTACTCGACCAAGCGAACTTTTTTA 100
consensus_2204#1      ATTTCCGACGTCCACACGACGTCCGGTTTAAGAGGTTACTCGACCAAGCGAACTTTTTTA 180
                      *** ******** ***********************************************

consensus_2204#0      GACGGGTTTTATGGGAAAAATTGTGGTAGATTTCCCAGGGTTGTTGTATCGAATAGCAGC 160
consensus_2204#1      GACGGGTTTTATGGGAAAAATCGTGGTAGATTTCCCAGGCTTGTTGTATCAAATAGCAGC 240
                      ********************* ***************** ********** *********

consensus_2204#0      CACAAAAAATATAT-TTTATGGATGGCTTTAAAAATATGAATCTTGCCCTCCCCCTTACT 219
consensus_2204#1      CACAAAAAATATATCTTTATGGATGGCTT-AAAAATATGAATCTTGCCCTCCCCCTTACT 299
                      ************** ************** ******************************

consensus_2204#0      CCTTGCTGGTCGGTAGCTTGCGATCATACCAGCTGTTCATATCGCCTATCCGCTAAAAGG 279
consensus_2204#1      CCTTGCTGGTCGGTAG-TTGCGATCATACCAGCTGTTCATATC-CCTATCCGC-AAAAGG 356
                      **************** ************************** ********* ******

consensus_2204#0      CGATTTTCGC-CGCGATTTACGAC-TAG-CGAAAACGTT-TGTAANCTTCACGATTTGTA 335
consensus_2204#1      CGATTTTCGCGCGCGATTTACGACCTAGTCGAAAACGTTCTGTTTTTTTCACGATTTCGT 416
                      ********** ************* *** ********** ***    **********   

consensus_2204#0      TTGGAGCGAA-GACACACAGCCAAAATTATGGTCACAAAAATTATGGGCCTGGGAAGGAT 394
consensus_2204#1      ATGGAGCGAACGACACACACCCAAGATTATGGTCACAAA--TTATGGA--TGGGAAGA-- 470
                       ********* ******** **** **************  ******   *******   

consensus_2204#0      TCATGGTTCTGACCTTCTGTTATCACATCTCGTCACAGACCGACAGAAATCTCCTG-TCG 453
consensus_2204#1      TTATGGTTCTGAC-TTCTGTT-TCACTCTCGCTCACAGAGCGACG---ATCTCCTGGTCG 525
                      * *********** ******* ****      ******* ****    ******** ***

consensus_2204#0      CATTCTCACAAATCCCATCAGGGACTCCTACACGGAGTATATCTAGGATACGGTTAGGCA 513
consensus_2204#1      CATTCTCACAA-TCCCATC---GGCTCTCACGCGCTCGCGCTCGNTG------------- 568
                      *********** *******   * ***  ** **       **   *             

consensus_2204#0      TTGCATCCTTTTNCTTCGGCAACGTTGTAAGCGGAAGCTNCATATNCCTTTTCCTCCCCT 573
consensus_2204#1      ------------------------------------------------------------
                                                                                  

consensus_2204#0      TTTGGGTATATATTACCCCCGGTNGTTTGGTTTGCGCCCAATTCTAGGCGACGTTTGCCG 633
consensus_2204#1      ------------------------------------------------------------
                                                                                  

consensus_2204#0      GAAAAAGCCGCAATTCCACGGGTAATTTCCCTNTCCAATTTGCAACTTCCGAATCTAAAG 693
consensus_2204#1      ------------------------------------------------------------
                                                                                  

consensus_2204#0      GTCTTCAAACCCTTCAAAAAAGGNGCTTACAACAACTCTGGGTGNTAAGCAAAAGNAGCA 753
consensus_2204#1      ------------------------------------------------------------
                                                                                  

consensus_2204#0      CCAAAGATAAAGCCTTCGTCTGGGGCCGACANACCCCAACAGACGTTGGCCTTNGGTCAC 813
consensus_2204#1      ------------------------------------------------------------
                                                                                  

consensus_2204#0      CCCACAAATTCTACCGGGTAGGACCCCCNGCTNTCTATCAACTTTTAGGGCCCCAACAGA 873
consensus_2204#1      ------------------------------------------------------------
                                                                                  

consensus_2204#0      TTTGG 878
consensus_2204#1      -----