cluster # 2206

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Anopheles gambiae
cluster # 2206 cluster # 2206 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2206#0 length = 929 sequences # 1

consensus_2206#1 length = 623 sequences # 1

consensusID : consensus_2206#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 929
fasta sequence

                              [AGAATCCCCGAGGTNATATACTTTCGTGCTCGTCACGAATATCTGTTATTCTGTAGTAATAAGACTAAAATAAAAGCACAAACAACTTCAAAATGCATAGAACCAGCGGTACGGCCCGATCCATACTGTCCGAGATAAAGATGGAGGTCGATTCGCACACACAGCACGGGCCGGCTCCTCGAAAGCCAGTACCGACGACGACGATCTTTACGAGGAGGAATTTACGCTGTGGCGATTTCGACATATGCCTTGGACGTGTGACTGATCCGAACCTCCACATCAAGGTGGTCGGAATCGATTCCGAACATCCCGTGATCCAGGTGAAACGACGAGGTGTACCAGGGCACAACTGGACTTCGCCTTCGGCACGAACGTGTCTTCGAAAAAGGATGCCCAAAGCGACGGCGGGATCTGGAATCCCGGTGTTCGAGAACCAAACATCAAAGACCTGTACCGGCACGTGGGCAGTACGGATAAGGTGCTGCGGATGAAGGCGAATATTCATCACCGCAAGGAGCAAAGACGCCCGCGAACAGCAGGACCACCAGTCGTCTTGCGGGGAGGCGAACGGGAACCAGTTCGGGCGATGAGACCCCGGGAACCGGACGGAAGCAAANGCACAGTTGGGAATGTACAACACTTGAAACCGGTTAAACGGAAGGGAAAGNGNCCNCCNTGAAAATAATTGCCACCCCCTAANTGGAGAGGGTCCACAGCTGGTTTAACCCCTAAAGACCCGGCACCGCATTTTAACGGTGTGGAAACATTTTACACTTGGGGCGACAGCNGAACCTTGGGCTGCCAACAACACGCGCAAACCAATTCAAAGGGGGGCAAACCCCGAATGGAGTGTCCTTGAACCCAATNTAACGTCACATGCATGCACNCAACACGGGGGGGATGTTGTACACCACCCCACNNTAGACAAA]

[+] EMBL AL696515             [AGAATCCCCGAGGTNATATACTTTCGTGCTCGTCACGAATATCTGTTATTCTGTAGTAATAAGACTAAAATAAAAGCACAAACAACTTCAAAATGCATAGAACCAGCGGTACGGCCCGATCCATACTGTCCGAGATAAAGATGGAGGTCGATTCGCACACACAGCACGGGCCGGCTCCTCGAAAGCCAGTACCGACGACGACGATCTTTACGAGGAGGAATTTACGCTGTGGCGATTTCGACATATGCCTTGGACGTGTGACTGATCCGAACCTCCACATCAAGGTGGTCGGAATCGATTCCGAACATCCCGTGATCCAGGTGAAACGACGAGGTGTACCAGGGCACAACTGGACTTCGCCTTCGGCACGAACGTGTCTTCGAAAAAGGATGCCCAAAGCGACGGCGGGATCTGGAATCCCGGTGTTCGAGAACCAAACATCAAAGACCTGTACCGGCACGTGGGCAGTACGGATAAGGTGCTGCGGATGAAGGCGAATATTCATCACCGCAAGGAGCAAAGACGCCCGCGAACAGCAGGACCACCAGTCGTCTTGCGGGGAGGCGAACGGGAACCAGTTCGGGCGATGAGACCCCGGGAACCGGACGGAAGCAAANGCACAGTTGGGAATGTACAACACTTGAAACCGGTTAAACGGAAGGGAAAGNGNCCNCCNTGAAAATAATTGCCACCCCCTAANTGGAGAGGGTCCACAGCTGGTTTAACCCCTAAAGACCCGGCACCGCATTTTAACGGTGTGGAAACATTTTACACTTGGGGCGACAGCNGAACCTTGGGCTGCCAACAACACGCGCAAACCAATTCAAAGGGGGGCAAACCCCGAATGGAGTGTCCTTGAACCCAATNTAACGTCACATGCATGCACNCAACACGGGGGGGATGTTGTACACCACCCCACNNTAGACAAA]




>consensus_2206#0
AGAATCCCCGAGGTNATATACTTTCGTGCTCGTCACGAATATCTGTTATTCTGTAGTAAT
AAGACTAAAATAAAAGCACAAACAACTTCAAAATGCATAGAACCAGCGGTACGGCCCGAT
CCATACTGTCCGAGATAAAGATGGAGGTCGATTCGCACACACAGCACGGGCCGGCTCCTC
GAAAGCCAGTACCGACGACGACGATCTTTACGAGGAGGAATTTACGCTGTGGCGATTTCG
ACATATGCCTTGGACGTGTGACTGATCCGAACCTCCACATCAAGGTGGTCGGAATCGATT
CCGAACATCCCGTGATCCAGGTGAAACGACGAGGTGTACCAGGGCACAACTGGACTTCGC
CTTCGGCACGAACGTGTCTTCGAAAAAGGATGCCCAAAGCGACGGCGGGATCTGGAATCC
CGGTGTTCGAGAACCAAACATCAAAGACCTGTACCGGCACGTGGGCAGTACGGATAAGGT
GCTGCGGATGAAGGCGAATATTCATCACCGCAAGGAGCAAAGACGCCCGCGAACAGCAGG
ACCACCAGTCGTCTTGCGGGGAGGCGAACGGGAACCAGTTCGGGCGATGAGACCCCGGGA
ACCGGACGGAAGCAAANGCACAGTTGGGAATGTACAACACTTGAAACCGGTTAAACGGAA
GGGAAAGNGNCCNCCNTGAAAATAATTGCCACCCCCTAANTGGAGAGGGTCCACAGCTGG
TTTAACCCCTAAAGACCCGGCACCGCATTTTAACGGTGTGGAAACATTTTACACTTGGGG
CGACAGCNGAACCTTGGGCTGCCAACAACACGCGCAAACCAATTCAAAGGGGGGCAAACC
CCGAATGGAGTGTCCTTGAACCCAATNTAACGTCACATGCATGCACNCAACACGGGGGGG
ATGTTGTACACCACCCCACNNTAGACAAA

consensusID : consensus_2206#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [ATGCATAGAACCAGCGGTACGGCCCGATCCATACTGTCCGAGATAAAGATGGAGGTCGATTCGCACACACAGCCACGGGCCGGCTCCTCGAAAGCCAGTACCGACGACGACGATCTTTACGAGGAGGAATTTACGCTGCTGGCCGATTTCGACATATGCCTGGACGTGGACGATCCGAACCTCCACATCAAGGTGGTCGGAATCGATTCCGAACATCCCGTGATCCAGGTGAACGACGAGGTTTACCAGGGCACAACGGACTTCGCCTTCGGCACGAACGTGTTCTTCGAAAAGGATGCCAAAGCGACGGCGGATCTGGATCCGGTGTTCGAGAACAACATCAAAGACCTGTACCGGCACGTGGGCAGTACGGATAAGGTGCTGCGGATGAAGCGAATATTCATCACCGCAAAGGAGCAAGACGCCCGCGAACAGCAGGACCACCAGTCGTCTGCGGCGAGCGAACGTAACAGTTCGGGCGATGAGACCCGGCAACCGGACGGTAGAAAGAAGTGGGAAGTCAACATGACGTACGAGGAGGCACTGAATATGCACCTAGCGGAGGGCAGTGTACCTAGCCGCCGCATAACGGGGACATTAAATGGAGAGGAACTGGTGCAAAA]

[+] EMBL BX617125             [ATGCATAGAACCAGCGGTACGGCCCGATCCATACTGTCCGAGATAAAGATGGAGGTCGATTCGCACACACAGCCACGGGCCGGCTCCTCGAAAGCCAGTACCGACGACGACGATCTTTACGAGGAGGAATTTACGCTGCTGGCCGATTTCGACATATGCCTGGACGTGGACGATCCGAACCTCCACATCAAGGTGGTCGGAATCGATTCCGAACATCCCGTGATCCAGGTGAACGACGAGGTTTACCAGGGCACAACGGACTTCGCCTTCGGCACGAACGTGTTCTTCGAAAAGGATGCCAAAGCGACGGCGGATCTGGATCCGGTGTTCGAGAACAACATCAAAGACCTGTACCGGCACGTGGGCAGTACGGATAAGGTGCTGCGGATGAAGCGAATATTCATCACCGCAAAGGAGCAAGACGCCCGCGAACAGCAGGACCACCAGTCGTCTGCGGCGAGCGAACGTAACAGTTCGGGCGATGAGACCCGGCAACCGGACGGTAGAAAGAAGTGGGAAGTCAACATGACGTACGAGGAGGCACTGAATATGCACCTAGCGGAGGGCAGTGTACCTAGCCGCCGCATAACGGGGACATTAAATGGAGAGGAACTGGTGCAAAA]




>consensus_2206#1
ATGCATAGAACCAGCGGTACGGCCCGATCCATACTGTCCGAGATAAAGATGGAGGTCGAT
TCGCACACACAGCCACGGGCCGGCTCCTCGAAAGCCAGTACCGACGACGACGATCTTTAC
GAGGAGGAATTTACGCTGCTGGCCGATTTCGACATATGCCTGGACGTGGACGATCCGAAC
CTCCACATCAAGGTGGTCGGAATCGATTCCGAACATCCCGTGATCCAGGTGAACGACGAG
GTTTACCAGGGCACAACGGACTTCGCCTTCGGCACGAACGTGTTCTTCGAAAAGGATGCC
AAAGCGACGGCGGATCTGGATCCGGTGTTCGAGAACAACATCAAAGACCTGTACCGGCAC
GTGGGCAGTACGGATAAGGTGCTGCGGATGAAGCGAATATTCATCACCGCAAAGGAGCAA
GACGCCCGCGAACAGCAGGACCACCAGTCGTCTGCGGCGAGCGAACGTAACAGTTCGGGC
GATGAGACCCGGCAACCGGACGGTAGAAAGAAGTGGGAAGTCAACATGACGTACGAGGAG
GCACTGAATATGCACCTAGCGGAGGGCAGTGTACCTAGCCGCCGCATAACGGGGACATTA
AATGGAGAGGAACTGGTGCAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2206#0      AGAATCCCCGAGGTNATATACTTTCGTGCTCGTCACGAATATCTGTTATTCTGTAGTAAT 60
consensus_2206#1      ------------------------------------------------------------
                                                                                  

consensus_2206#0      AAGACTAAAATAAAAGCACAAACAACTTCAAAATGCATAGAACCAGCGGTACGGCCCGAT 120
consensus_2206#1      --------------------------------ATGCATAGAACCAGCGGTACGGCCCGAT 28
                                                      ****************************

consensus_2206#0      CCATACTGTCCGAGATAAAGATGGAGGTCGATTCGCACACACAGC-ACGGGCCGGCTCCT 179
consensus_2206#1      CCATACTGTCCGAGATAAAGATGGAGGTCGATTCGCACACACAGCCACGGGCCGGCTCCT 88
                      ********************************************* **************

consensus_2206#0      CGAAAGCCAGTACCGACGACGACGATCTTTACGAGGAGGAATTTACGCTGTGG--CGATT 237
consensus_2206#1      CGAAAGCCAGTACCGACGACGACGATCTTTACGAGGAGGAATTTACGCTGCTGGCCGATT 148
                      **************************************************  *  *****

consensus_2206#0      TCGACATATGCCTTGGACGTGTGACTGATCCGAACCTCCACATCAAGGTGGTCGGAATCG 297
consensus_2206#1      TCGACATATGCCT-GGACGTG-GAC-GATCCGAACCTCCACATCAAGGTGGTCGGAATCG 205
                      ************* ******* *** **********************************

consensus_2206#0      ATTCCGAACATCCCGTGATCCAGGTGAAACGACGAGGTGTACCAGGGCACAACTGGACTT 357
consensus_2206#1      ATTCCGAACATCCCGTGATCCAGGTGAA-CGACGAGGTTTACCAGGGCACAAC-GGACTT 263
                      **************************** ********* ************** ******

consensus_2206#0      CGCCTTCGGCACGAACGTGTCTTCGAAAAAGGATGCCCAAAGCGACGGCGGGATCTGGAA 417
consensus_2206#1      CGCCTTCGGCACGAACGTGTTCTTCGAAAAGGATGCC-AAAGCGACGGCGG-ATCTGGA- 320
                      ********************  *   *********** ************* ******* 

consensus_2206#0      TCCCGGTGTTCGAGAACCAAACATCAAAGACCTGTACCGGCACGTGGGCAGTACGGATAA 477
consensus_2206#1      -TCCGGTGTTCGAGAAC--AACATCAAAGACCTGTACCGGCACGTGGGCAGTACGGATAA 377
                        ***************  *****************************************

consensus_2206#0      GGTGCTGCGGATGAAGGCGAATATTCATCACCGCAAGGAGCAAAGACGCCCGCGAACAGC 537
consensus_2206#1      GGTGCTGCGGATGAAG-CGAATATTCATCACCGCAAAGGAGCAAGACGCCCGCGAACAGC 436
                      **************** ******************* *    ******************

consensus_2206#0      AGGACCACCAGTCGTCTTGCGGGGAGGCGAACGGGAACCAGTTCGGGCGATGAGACCCCG 597
consensus_2206#1      AGGACCACCAGTCGTCT-GCGGCGAG-CGAACGTAA--CAGTTCGGGCGATGAGACCC-G 491
                      ***************** **** *** ******  *  ******************** *

consensus_2206#0      GGAACCGGACGG---AAGCAAANGCACAGTTGGGA--ATGTACAA-----CACTTGAAAC 647
consensus_2206#1      GCAACCGGACGGTAGAAAGAAGTGGGAAGTCAACATGACGTACGAGGAGGCACTGAATAT 551
                      * **********   **  **  *   ***    *  * **** *     ****  * * 

consensus_2206#0      CGGTTAAACGGAAGGGAAAGNGNCCNCCNTGAAAATAATTGCCACCCCCTAANTGGAGAG 707
consensus_2206#1      GCACCTAGCGGAGGGCAGTGTACCTAGCCGCCGCATAACGGGGACAT--TAAATGGAGAG 609
                            * **** ** *  *   *   *      ****  *  **    *** *******

consensus_2206#0      GGTCCACAGCTGGTTTAACCCCTAAAGACCCGGCACCGCATTTTAACGGTGTGGAAACAT 767
consensus_2206#1      GAACTGGTGCAAAA---------------------------------------------- 623
                      *  *    **                                                  

consensus_2206#0      TTTACACTTGGGGCGACAGCNGAACCTTGGGCTGCCAACAACACGCGCAAACCAATTCAA 827
consensus_2206#1      ------------------------------------------------------------
                                                                                  

consensus_2206#0      AGGGGGGCAAACCCCGAATGGAGTGTCCTTGAACCCAATNTAACGTCACATGCATGCACN 887
consensus_2206#1      ------------------------------------------------------------
                                                                                  

consensus_2206#0      CAACACGGGGGGGATGTTGTACACCACCCCACNNTAGACAAA 929
consensus_2206#1      ------------------------------------------