These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1482 fasta sequence [CCCGAGGTTTGCTCCGACGGGGTGCACGTGCGATTAGGCCATTCTATTTCGTGTTTACACACAGCATAAAAATATGGGCAACAAAAACCAGGTGAAGCGGTTGCAACAGCAGCGTGCCAGTTTGCTCCGCCGTACGATCTCAAACCTAACCTGTACTAGCCTGTGCTCTCAATGCCCACCTGCATCTGGTCCGCACAAGTGGCAAGCCTGACAGCAAAAAGCTGGGCATGACGCATTGAGCCTGCAACACTTAATCTGACTGGCCCAGGGGCCAGCTCGGGCCCAATTGGTTTGCCGTATTACCCCAAGGTTAAACTAACAACNAACCAAGGGTTCTGTGGACCCCTGGGGCCCCGTTAAAACGAANGAATTTCCCTTGGGGTATTGGAAGCAACAGNAACAACCTCTTANTGGTTACCGACACGCCTTATCCNCAAGGGCGACATTCCCAAAATGGNAAAAACCAAAGGCCTTGGGACCCATTATCACTTTACCCCANANACNAAACGGTGAAAGTCTGCAATTAGCGGAACACGTTCGGGTACNCTTCAGGGTTGAAACAGCGGGACCCACACAAGGTTTAGCCGCAGTTNTAAACCCCCNTGAAAACGCATTNTCCAAACCCCGGGAAACTNTGGACGAGTNTGNCGGTTATGGTGGGGCCCGCGAAAGACCTTTGGGCCNAACCACNACAGGCGCTTCGTGAGGNGCCCCACAGAGACACAACGTCACCATTNAAACAACGGNCCCATTGTGGGGNGGNCCCACACACACCTTNGTAGCCGGTACCCCAATTTTTCAAACAATTGCCCAAACGAAGGTGAACAATTATCCCCCCGNACGANCGAGGGAGATCTACCGCAACAGATGCCACGAGGGAGCAGATAGTGTGGCAACAAGCCATNGNNNGTGCCATCAATNGGTGGNACACCCCCCANNNCTGGTAGCGTAGCGCCCCAAACAGGCAGGTTAANAAACGCNATNGCNCCTGCCGAGANCNAGTNNAAANCAAATGGTGTCCCGCCTANTAGTGCAGATATGAGCCAAGAAGCAANGTANGGTGACGGACTTTAATNAACANGCGGCNACAGAGTGTCCACAACAACAACAACATTGTGTGTCCTTTAATGACCAAAAATATNCACGGTGAGNTNGGTATGACCCCCACACTACCGCCAAAAACAGCGCTGACATTACTAAACGGGAGGGAAACCCCCCNTGTGTGCACAANACAACTACCGAGGATGNATGCANCCCAAATNATCANACGTGCCNAACACACATAATNTTAACCCGCCNGTGGCGATGCATCCCAGGTTTNTTGGCTCCACCCCCCAAATTGCCAAAATTGCAGAACACCANCTAGTTATGTGGTGAACCCCCGGGGCATCCAACAACAACCCATNACNCAGGCNCAATAACAACAGCAATNCCGGAACTTCCCNCANAACTNCACCAGGCAGTACACTTTGNCACCACCAN] [+] EMBL AL696537 [CCCGAGGTTTGCTCCGACGGGGTGCACGTGCGATTAGGCCATTCTATTTCGTGTTTACACACAGCATAAAAATATGGGCAACAAAAACCAGGTGAAGCGGTTGCAACAGCAGCGTGCCAGTTTGCTCCGCCGTACGATCTCAAACCTAACCTGTACTAGCCTGTGCTCTCAATGCCCACCTGCATCTGGTCCGCACAAGTGGCAAGCCTGACAGCAAAAAGCTGGGCATGACGCATTGAGCCTGCAACACTTAATCTGACTGGCCCAGGGGCCAGCTCGGGCCCAATTGGTTTGCCGTATTACCCCAAGGTTAAACTAACAACNAACCAAGGGTTCTGTGGACCCCTGGGGCCCCGTTAAAACGAANGAATTTCCCTTGGGGTATTGGAAGCAACAGNAACAACCTCTTANTGGTTACCGACACGCCTTATCCNCAAGGGCGACATTCCCAAAATGGNAAAAACCAAAGGCCTTGGGACCCATTATCACTTTACCCCANANACNAAACGGTGAAAGTCTGCAATTAGCGGAACACGTTCGGGTACNCTTCAGGGTTGAAACAGCGGGACCCACACAAGGTTTAGCCGCAGTTNTAAACCCCCNTGAAAACGCATTNTCCAAACCCCGGGAAACTNTGGACGAGTNTGNCGGTTATGGTGGGGCCCGCGAAAGACCTTTGGGCCNAACCACNACAGGCGCTTCGTGAGGNGCCCCACAGAGACACAACGTCACCATTNAAACAACGGNCCCATTGTGGGGNGGNCCCACACACACCTTNGTAGCCGGTACCCCAATTTTTCAAACAATTGCCCAAACGAAGGTGAACAATTATCCCCCCGNACGANCGAGGGAGATCTACCGCAACAGATGCCACGAGGGAGCAGATAGTGTGGCAACAAGCCATNGNNNGTGCCATCAATNGGTGGNACACCCCCCANNNCTGGTAGCGTAGCGCCCCAAACAGGCAGGTTAANAAACGCNATNGCNCCTGCCGAGANCNAGTNNAAANCAAATGGTGTCCCGCCTANTAGTGCAGATATGAGCCAAGAAGCAANGTANGGTGACGGACTTTAATNAACANGCGGCNACAGAGTGTCCACAACAACAACAACATTGTGTGTCCTTTAATGACCAAAAATATNCACGGTGAGNTNGGTATGACCCCCACACTACCGCCAAAAACAGCGCTGACATTACTAAACGGGAGGGAAACCCCCCNTGTGTGCACAANACAACTACCGAGGATGNATGCANCCCAAATNATCANACGTGCCNAACACACATAATNTTAACCCGCCNGTGGCGATGCATCCCAGGTTTNTTGGCTCCACCCCCCAAATTGCCAAAATTGCAGAACACCANCTAGTTATGTGGTGAACCCCCGGGGCATCCAACAACAACCCATNACNCAGGCNCAATAACAACAGCAATNCCGGAACTTCCCNCANAACTNCACCAGGCAGTACACTTTGNCACCACCAN] consensusID : consensus_2213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence [CCGGTGCGATTAGGCCATTCTATTTCGTGTTTACACACAGCATAAAAACATGGGCAACAAAAACCAGGTGAAGCGGTTGCAACAGCAGCGTGCCAGTTTGCTCCGCCGTACGATCAAACCTACCGACAGCCGGCTCAAGCCCACCGATCGGTCGAAAGGGAAGCCGAAGAAAAAGCGGGATGACGATGAGCCGAAACTAATCGACCGGCCCCAGGGCAGCTCGGCCATGTTCTTCCAGTACAACACACAGCTCGGCCCGCCCTACCACATCCTGGTTGACACGAACTTTGTCAACTTCAGCATCAAGAACAAGCTGGACATTATCAAAACGATGATGGACTGTCTGTACGCCAAGTGCATACCCTACATCACCGACTGCGTGGTGGCCGAGCTGGAAAAGCTGGGCCAGAAGTATAAGCTGGCACTGCGCATCATCAAAGATCCGCGGTTCGAGCGGCTGCACTGCTTGCACCGGGGCACGTACGCCGACGACTGCCTGGTGCAGCGGGTAACGCAGCACAAATGCTACATCGTGGCCACCA] [+] EMBL BM614973 [CCGGTGCGATTAGGCCATTCTATTTCGTGTTTACACACAGCATAAAAACATGGGCAACAAAAACCAGGTGAAGCGGTTGCAACAGCAGCGTGCCAGTTTGCTCCGCCGTACGATCAAACCTACCGACAGCCGGCTCAAGCCCACCGATCGGTCGAAAGGGAAGCCGAAGAAAAAGCGGGATGACGATGAGCCGAAACTAATCGACCGGCCCCAGGGCAGCTCGGCCATGTTCTTCCAGTACAACACACAGCTCGGCCCGCCCTACCACATCCTGGTTGACACGAACTTTGTCAACTTCAGCATCAAGAACAAGCTGGACATTATCAAAACGATGATGGACTGTCTGTACGCCAAGTGCATACCCTACATCACCGACTGCGTGGTGGCCGAGCTGGAAAAGCTGGGCCAGAAGTATAAGCTGGCACTGCGCATCATCAAAGATCCGCGGTTCGAGCGGCTGCACTGCTTGCACCGGGGCACGTACGCCGACGACTGCCTGGTGCAGCGGGTAACGCAGCACAAATGCTACATCGTGGCCACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2213#0 CCCGAGGTTTGCTCCGACGGGGTGCACGTGCGATTAGGCCATTCTATTTCGTGTTTACAC 60 consensus_2213#1 ------------------------CCGGTGCGATTAGGCCATTCTATTTCGTGTTTACAC 36 * ********************************* consensus_2213#0 ACAGCATAAAAATATGGGCAACAAAAACCAGGTGAAGCGGTTGCAACAGCAGCGTGCCAG 120 consensus_2213#1 ACAGCATAAAAACATGGGCAACAAAAACCAGGTGAAGCGGTTGCAACAGCAGCGTGCCAG 96 ************ *********************************************** consensus_2213#0 TTTGCTCCGCCGTACGATCTCAAACCTAACCTGTACTAGCCTGTGCTCTCAATGCCCACC 180 consensus_2213#1 TTTGCTCCGCCGTACGAT--CAAACCTACC----GACAGCCGG----CTCAA-GCCCACC 145 ****************** ******** * **** * ***** ******* consensus_2213#0 TGCATCTGGTCCGCACAAGTGGCAAGCCTGACAGCAAAAAGCTGGGCATGACGCATTGAG 240 consensus_2213#1 --------GATCGGTCGAAAGGGAAGCCGAA---GAAAAAGC--GGGATGACGA--TGAG 190 * ** * * ** ***** * ******* ** ****** **** consensus_2213#0 CCTGCAACACTTAATCTGACTGGCCCAGGGGCCAGCTCGGGCCCAATTGGTTTGCCGTAT 300 consensus_2213#1 CC-GAAAC---TAATC-GACCGGCCCCAGGGC-AGCTCGG---CCATGTTCTTCCAGTAC 241 ** * *** ***** *** ***** **** ******* * ** ** * *** consensus_2213#0 TACCCCAAGGTTAAACTAAC--AACNAACCAAGGGTTCTGTGGACCCCTGGGGCCCCGTT 358 consensus_2213#1 AACACACAGCTCGGCCCGCCCTACCACATCCTGGTTGACACGAACTTTGTCAACTTCAGC 301 ** * ** * * * * * * * ** * * ** * * consensus_2213#0 AAAACGAANGAATTTCCCTTGGGGTATTGGAAGCAACAGNAACAACCTCT-TANTGGTTA 417 consensus_2213#1 ATCAAGAACAAGCTGGACAT----TATCAAAACGATGATGGACTGTCTGTACGCCAAGTG 357 * * *** * * * * *** ** * * ** ** * * consensus_2213#0 CCGACACGCCTTATCCNCAAGGGCGACATTCCCAAAATGGNAAAA----ACCAAAGGCCT 473 consensus_2213#1 C--ATACCCTACATCACCGACTGCGTGGTGGCCGAGCTGGAAAAGCTGGGCCAGAAGTAT 415 * * ** * *** * * *** * ** * *** *** *** * * * consensus_2213#0 ----TGGGACCCATTATCACTTTAC-CCCANANACNAAACGGTGAAAGTCTGCAATTAGC 528 consensus_2213#1 AAGCTGGCACTGCGCATCATCAAAGATCCGCGGTTCGAGCGGCTGCA--CTGCTTGCACC 473 *** ** **** * ** * *** * **** * * consensus_2213#0 GGAACACGTTCGGGTACNCTTCAGGGTTGAAACAGCGGGACCCACACAAGGTTTA-GCCG 587 consensus_2213#1 GGGGCACGTACGCCGACGACTGCCTGGTGCAGCGGGTAACGCAGCACAAATGCTACATCG 533 ** ***** ** ** * * ** * * * * ***** ** ** consensus_2213#0 CAGTTNTAAACCCCCNTGAAAACGCATTNTCCAAACCCCGGGAAACTNTGGACGAGTNTG 647 consensus_2213#1 TGGCCACCA--------------------------------------------------- 542 * * consensus_2213#0 NCGGTTATGGTGGGGCCCGCGAAAGACCTTTGGGCCNAACCACNACAGGCGCTTCGTGAG 707 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 GNGCCCCACAGAGACACAACGTCACCATTNAAACAACGGNCCCATTGTGGGGNGGNCCCA 767 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 CACACACCTTNGTAGCCGGTACCCCAATTTTTCAAACAATTGCCCAAACGAAGGTGAACA 827 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 ATTATCCCCCCGNACGANCGAGGGAGATCTACCGCAACAGATGCCACGAGGGAGCAGATA 887 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 GTGTGGCAACAAGCCATNGNNNGTGCCATCAATNGGTGGNACACCCCCCANNNCTGGTAG 947 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 CGTAGCGCCCCAAACAGGCAGGTTAANAAACGCNATNGCNCCTGCCGAGANCNAGTNNAA 1007 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 ANCAAATGGTGTCCCGCCTANTAGTGCAGATATGAGCCAAGAAGCAANGTANGGTGACGG 1067 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 ACTTTAATNAACANGCGGCNACAGAGTGTCCACAACAACAACAACATTGTGTGTCCTTTA 1127 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 ATGACCAAAAATATNCACGGTGAGNTNGGTATGACCCCCACACTACCGCCAAAAACAGCG 1187 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 CTGACATTACTAAACGGGAGGGAAACCCCCCNTGTGTGCACAANACAACTACCGAGGATG 1247 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 NATGCANCCCAAATNATCANACGTGCCNAACACACATAATNTTAACCCGCCNGTGGCGAT 1307 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 GCATCCCAGGTTTNTTGGCTCCACCCCCCAAATTGCCAAAATTGCAGAACACCANCTAGT 1367 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 TATGTGGTGAACCCCCGGGGCATCCAACAACAACCCATNACNCAGGCNCAATAACAACAG 1427 consensus_2213#1 ------------------------------------------------------------ consensus_2213#0 CAATNCCGGAACTTCCCNCANAACTNCACCAGGCAGTACACTTTGNCACCACCAN 1482 consensus_2213#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||