cluster # 2213

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2213 cluster # 2213 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2213#0 length = 1482 sequences # 1

consensus_2213#1 length = 542 sequences # 1

consensusID : consensus_2213#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1482
fasta sequence

                              [CCCGAGGTTTGCTCCGACGGGGTGCACGTGCGATTAGGCCATTCTATTTCGTGTTTACACACAGCATAAAAATATGGGCAACAAAAACCAGGTGAAGCGGTTGCAACAGCAGCGTGCCAGTTTGCTCCGCCGTACGATCTCAAACCTAACCTGTACTAGCCTGTGCTCTCAATGCCCACCTGCATCTGGTCCGCACAAGTGGCAAGCCTGACAGCAAAAAGCTGGGCATGACGCATTGAGCCTGCAACACTTAATCTGACTGGCCCAGGGGCCAGCTCGGGCCCAATTGGTTTGCCGTATTACCCCAAGGTTAAACTAACAACNAACCAAGGGTTCTGTGGACCCCTGGGGCCCCGTTAAAACGAANGAATTTCCCTTGGGGTATTGGAAGCAACAGNAACAACCTCTTANTGGTTACCGACACGCCTTATCCNCAAGGGCGACATTCCCAAAATGGNAAAAACCAAAGGCCTTGGGACCCATTATCACTTTACCCCANANACNAAACGGTGAAAGTCTGCAATTAGCGGAACACGTTCGGGTACNCTTCAGGGTTGAAACAGCGGGACCCACACAAGGTTTAGCCGCAGTTNTAAACCCCCNTGAAAACGCATTNTCCAAACCCCGGGAAACTNTGGACGAGTNTGNCGGTTATGGTGGGGCCCGCGAAAGACCTTTGGGCCNAACCACNACAGGCGCTTCGTGAGGNGCCCCACAGAGACACAACGTCACCATTNAAACAACGGNCCCATTGTGGGGNGGNCCCACACACACCTTNGTAGCCGGTACCCCAATTTTTCAAACAATTGCCCAAACGAAGGTGAACAATTATCCCCCCGNACGANCGAGGGAGATCTACCGCAACAGATGCCACGAGGGAGCAGATAGTGTGGCAACAAGCCATNGNNNGTGCCATCAATNGGTGGNACACCCCCCANNNCTGGTAGCGTAGCGCCCCAAACAGGCAGGTTAANAAACGCNATNGCNCCTGCCGAGANCNAGTNNAAANCAAATGGTGTCCCGCCTANTAGTGCAGATATGAGCCAAGAAGCAANGTANGGTGACGGACTTTAATNAACANGCGGCNACAGAGTGTCCACAACAACAACAACATTGTGTGTCCTTTAATGACCAAAAATATNCACGGTGAGNTNGGTATGACCCCCACACTACCGCCAAAAACAGCGCTGACATTACTAAACGGGAGGGAAACCCCCCNTGTGTGCACAANACAACTACCGAGGATGNATGCANCCCAAATNATCANACGTGCCNAACACACATAATNTTAACCCGCCNGTGGCGATGCATCCCAGGTTTNTTGGCTCCACCCCCCAAATTGCCAAAATTGCAGAACACCANCTAGTTATGTGGTGAACCCCCGGGGCATCCAACAACAACCCATNACNCAGGCNCAATAACAACAGCAATNCCGGAACTTCCCNCANAACTNCACCAGGCAGTACACTTTGNCACCACCAN]

[+] EMBL AL696537             [CCCGAGGTTTGCTCCGACGGGGTGCACGTGCGATTAGGCCATTCTATTTCGTGTTTACACACAGCATAAAAATATGGGCAACAAAAACCAGGTGAAGCGGTTGCAACAGCAGCGTGCCAGTTTGCTCCGCCGTACGATCTCAAACCTAACCTGTACTAGCCTGTGCTCTCAATGCCCACCTGCATCTGGTCCGCACAAGTGGCAAGCCTGACAGCAAAAAGCTGGGCATGACGCATTGAGCCTGCAACACTTAATCTGACTGGCCCAGGGGCCAGCTCGGGCCCAATTGGTTTGCCGTATTACCCCAAGGTTAAACTAACAACNAACCAAGGGTTCTGTGGACCCCTGGGGCCCCGTTAAAACGAANGAATTTCCCTTGGGGTATTGGAAGCAACAGNAACAACCTCTTANTGGTTACCGACACGCCTTATCCNCAAGGGCGACATTCCCAAAATGGNAAAAACCAAAGGCCTTGGGACCCATTATCACTTTACCCCANANACNAAACGGTGAAAGTCTGCAATTAGCGGAACACGTTCGGGTACNCTTCAGGGTTGAAACAGCGGGACCCACACAAGGTTTAGCCGCAGTTNTAAACCCCCNTGAAAACGCATTNTCCAAACCCCGGGAAACTNTGGACGAGTNTGNCGGTTATGGTGGGGCCCGCGAAAGACCTTTGGGCCNAACCACNACAGGCGCTTCGTGAGGNGCCCCACAGAGACACAACGTCACCATTNAAACAACGGNCCCATTGTGGGGNGGNCCCACACACACCTTNGTAGCCGGTACCCCAATTTTTCAAACAATTGCCCAAACGAAGGTGAACAATTATCCCCCCGNACGANCGAGGGAGATCTACCGCAACAGATGCCACGAGGGAGCAGATAGTGTGGCAACAAGCCATNGNNNGTGCCATCAATNGGTGGNACACCCCCCANNNCTGGTAGCGTAGCGCCCCAAACAGGCAGGTTAANAAACGCNATNGCNCCTGCCGAGANCNAGTNNAAANCAAATGGTGTCCCGCCTANTAGTGCAGATATGAGCCAAGAAGCAANGTANGGTGACGGACTTTAATNAACANGCGGCNACAGAGTGTCCACAACAACAACAACATTGTGTGTCCTTTAATGACCAAAAATATNCACGGTGAGNTNGGTATGACCCCCACACTACCGCCAAAAACAGCGCTGACATTACTAAACGGGAGGGAAACCCCCCNTGTGTGCACAANACAACTACCGAGGATGNATGCANCCCAAATNATCANACGTGCCNAACACACATAATNTTAACCCGCCNGTGGCGATGCATCCCAGGTTTNTTGGCTCCACCCCCCAAATTGCCAAAATTGCAGAACACCANCTAGTTATGTGGTGAACCCCCGGGGCATCCAACAACAACCCATNACNCAGGCNCAATAACAACAGCAATNCCGGAACTTCCCNCANAACTNCACCAGGCAGTACACTTTGNCACCACCAN]




>consensus_2213#0
CCCGAGGTTTGCTCCGACGGGGTGCACGTGCGATTAGGCCATTCTATTTCGTGTTTACAC
ACAGCATAAAAATATGGGCAACAAAAACCAGGTGAAGCGGTTGCAACAGCAGCGTGCCAG
TTTGCTCCGCCGTACGATCTCAAACCTAACCTGTACTAGCCTGTGCTCTCAATGCCCACC
TGCATCTGGTCCGCACAAGTGGCAAGCCTGACAGCAAAAAGCTGGGCATGACGCATTGAG
CCTGCAACACTTAATCTGACTGGCCCAGGGGCCAGCTCGGGCCCAATTGGTTTGCCGTAT
TACCCCAAGGTTAAACTAACAACNAACCAAGGGTTCTGTGGACCCCTGGGGCCCCGTTAA
AACGAANGAATTTCCCTTGGGGTATTGGAAGCAACAGNAACAACCTCTTANTGGTTACCG
ACACGCCTTATCCNCAAGGGCGACATTCCCAAAATGGNAAAAACCAAAGGCCTTGGGACC
CATTATCACTTTACCCCANANACNAAACGGTGAAAGTCTGCAATTAGCGGAACACGTTCG
GGTACNCTTCAGGGTTGAAACAGCGGGACCCACACAAGGTTTAGCCGCAGTTNTAAACCC
CCNTGAAAACGCATTNTCCAAACCCCGGGAAACTNTGGACGAGTNTGNCGGTTATGGTGG
GGCCCGCGAAAGACCTTTGGGCCNAACCACNACAGGCGCTTCGTGAGGNGCCCCACAGAG
ACACAACGTCACCATTNAAACAACGGNCCCATTGTGGGGNGGNCCCACACACACCTTNGT
AGCCGGTACCCCAATTTTTCAAACAATTGCCCAAACGAAGGTGAACAATTATCCCCCCGN
ACGANCGAGGGAGATCTACCGCAACAGATGCCACGAGGGAGCAGATAGTGTGGCAACAAG
CCATNGNNNGTGCCATCAATNGGTGGNACACCCCCCANNNCTGGTAGCGTAGCGCCCCAA
ACAGGCAGGTTAANAAACGCNATNGCNCCTGCCGAGANCNAGTNNAAANCAAATGGTGTC
CCGCCTANTAGTGCAGATATGAGCCAAGAAGCAANGTANGGTGACGGACTTTAATNAACA
NGCGGCNACAGAGTGTCCACAACAACAACAACATTGTGTGTCCTTTAATGACCAAAAATA
TNCACGGTGAGNTNGGTATGACCCCCACACTACCGCCAAAAACAGCGCTGACATTACTAA
ACGGGAGGGAAACCCCCCNTGTGTGCACAANACAACTACCGAGGATGNATGCANCCCAAA
TNATCANACGTGCCNAACACACATAATNTTAACCCGCCNGTGGCGATGCATCCCAGGTTT
NTTGGCTCCACCCCCCAAATTGCCAAAATTGCAGAACACCANCTAGTTATGTGGTGAACC
CCCGGGGCATCCAACAACAACCCATNACNCAGGCNCAATAACAACAGCAATNCCGGAACT
TCCCNCANAACTNCACCAGGCAGTACACTTTGNCACCACCAN

consensusID : consensus_2213#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 542
fasta sequence

                              [CCGGTGCGATTAGGCCATTCTATTTCGTGTTTACACACAGCATAAAAACATGGGCAACAAAAACCAGGTGAAGCGGTTGCAACAGCAGCGTGCCAGTTTGCTCCGCCGTACGATCAAACCTACCGACAGCCGGCTCAAGCCCACCGATCGGTCGAAAGGGAAGCCGAAGAAAAAGCGGGATGACGATGAGCCGAAACTAATCGACCGGCCCCAGGGCAGCTCGGCCATGTTCTTCCAGTACAACACACAGCTCGGCCCGCCCTACCACATCCTGGTTGACACGAACTTTGTCAACTTCAGCATCAAGAACAAGCTGGACATTATCAAAACGATGATGGACTGTCTGTACGCCAAGTGCATACCCTACATCACCGACTGCGTGGTGGCCGAGCTGGAAAAGCTGGGCCAGAAGTATAAGCTGGCACTGCGCATCATCAAAGATCCGCGGTTCGAGCGGCTGCACTGCTTGCACCGGGGCACGTACGCCGACGACTGCCTGGTGCAGCGGGTAACGCAGCACAAATGCTACATCGTGGCCACCA]

[+] EMBL BM614973             [CCGGTGCGATTAGGCCATTCTATTTCGTGTTTACACACAGCATAAAAACATGGGCAACAAAAACCAGGTGAAGCGGTTGCAACAGCAGCGTGCCAGTTTGCTCCGCCGTACGATCAAACCTACCGACAGCCGGCTCAAGCCCACCGATCGGTCGAAAGGGAAGCCGAAGAAAAAGCGGGATGACGATGAGCCGAAACTAATCGACCGGCCCCAGGGCAGCTCGGCCATGTTCTTCCAGTACAACACACAGCTCGGCCCGCCCTACCACATCCTGGTTGACACGAACTTTGTCAACTTCAGCATCAAGAACAAGCTGGACATTATCAAAACGATGATGGACTGTCTGTACGCCAAGTGCATACCCTACATCACCGACTGCGTGGTGGCCGAGCTGGAAAAGCTGGGCCAGAAGTATAAGCTGGCACTGCGCATCATCAAAGATCCGCGGTTCGAGCGGCTGCACTGCTTGCACCGGGGCACGTACGCCGACGACTGCCTGGTGCAGCGGGTAACGCAGCACAAATGCTACATCGTGGCCACCA]




>consensus_2213#1
CCGGTGCGATTAGGCCATTCTATTTCGTGTTTACACACAGCATAAAAACATGGGCAACAA
AAACCAGGTGAAGCGGTTGCAACAGCAGCGTGCCAGTTTGCTCCGCCGTACGATCAAACC
TACCGACAGCCGGCTCAAGCCCACCGATCGGTCGAAAGGGAAGCCGAAGAAAAAGCGGGA
TGACGATGAGCCGAAACTAATCGACCGGCCCCAGGGCAGCTCGGCCATGTTCTTCCAGTA
CAACACACAGCTCGGCCCGCCCTACCACATCCTGGTTGACACGAACTTTGTCAACTTCAG
CATCAAGAACAAGCTGGACATTATCAAAACGATGATGGACTGTCTGTACGCCAAGTGCAT
ACCCTACATCACCGACTGCGTGGTGGCCGAGCTGGAAAAGCTGGGCCAGAAGTATAAGCT
GGCACTGCGCATCATCAAAGATCCGCGGTTCGAGCGGCTGCACTGCTTGCACCGGGGCAC
GTACGCCGACGACTGCCTGGTGCAGCGGGTAACGCAGCACAAATGCTACATCGTGGCCAC
CA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2213#0      CCCGAGGTTTGCTCCGACGGGGTGCACGTGCGATTAGGCCATTCTATTTCGTGTTTACAC 60
consensus_2213#1      ------------------------CCGGTGCGATTAGGCCATTCTATTTCGTGTTTACAC 36
                                              *  *********************************

consensus_2213#0      ACAGCATAAAAATATGGGCAACAAAAACCAGGTGAAGCGGTTGCAACAGCAGCGTGCCAG 120
consensus_2213#1      ACAGCATAAAAACATGGGCAACAAAAACCAGGTGAAGCGGTTGCAACAGCAGCGTGCCAG 96
                      ************ ***********************************************

consensus_2213#0      TTTGCTCCGCCGTACGATCTCAAACCTAACCTGTACTAGCCTGTGCTCTCAATGCCCACC 180
consensus_2213#1      TTTGCTCCGCCGTACGAT--CAAACCTACC----GACAGCCGG----CTCAA-GCCCACC 145
                      ******************  ******** *       **** *    ***** *******

consensus_2213#0      TGCATCTGGTCCGCACAAGTGGCAAGCCTGACAGCAAAAAGCTGGGCATGACGCATTGAG 240
consensus_2213#1      --------GATCGGTCGAAAGGGAAGCCGAA---GAAAAAGC--GGGATGACGA--TGAG 190
                              *  **  * *  ** *****  *    *******  ** ******   ****

consensus_2213#0      CCTGCAACACTTAATCTGACTGGCCCAGGGGCCAGCTCGGGCCCAATTGGTTTGCCGTAT 300
consensus_2213#1      CC-GAAAC---TAATC-GACCGGCCCCAGGGC-AGCTCGG---CCATGTTCTTCCAGTAC 241
                      ** * ***   ***** *** *****  **** *******   * **    ** * *** 

consensus_2213#0      TACCCCAAGGTTAAACTAAC--AACNAACCAAGGGTTCTGTGGACCCCTGGGGCCCCGTT 358
consensus_2213#1      AACACACAGCTCGGCCCGCCCTACCACATCCTGGTTGACACGAACTTTGTCAACTTCAGC 301
                       ** *  ** *    *   *  * *  * *  ** *     * **        *  *   

consensus_2213#0      AAAACGAANGAATTTCCCTTGGGGTATTGGAAGCAACAGNAACAACCTCT-TANTGGTTA 417
consensus_2213#1      ATCAAGAACAAGCTGGACAT----TATCAAAACGATGATGGACTGTCTGTACGCCAAGTG 357
                      *  * ***  *  *   * *    ***   **  *  *   **   ** *        * 

consensus_2213#0      CCGACACGCCTTATCCNCAAGGGCGACATTCCCAAAATGGNAAAA----ACCAAAGGCCT 473
consensus_2213#1      C--ATACCCTACATCACCGACTGCGTGGTGGCCGAGCTGGAAAAGCTGGGCCAGAAGTAT 415
                      *  * ** *   ***  * *  ***   *  ** *  *** ***      *** * *  *

consensus_2213#0      ----TGGGACCCATTATCACTTTAC-CCCANANACNAAACGGTGAAAGTCTGCAATTAGC 528
consensus_2213#1      AAGCTGGCACTGCGCATCATCAAAGATCCGCGGTTCGAGCGGCTGCA--CTGCTTGCACC 473
                          *** **     ****    *   **        * ***    *  ****    * *

consensus_2213#0      GGAACACGTTCGGGTACNCTTCAGGGTTGAAACAGCGGGACCCACACAAGGTTTA-GCCG 587
consensus_2213#1      GGGGCACGTACGCCGACGACTGCCTGGTGCAGCGGGTAACGCAGCACAAATGCTACATCG 533
                      **  ***** **   **   *    * ** * * *      *  *****    **   **

consensus_2213#0      CAGTTNTAAACCCCCNTGAAAACGCATTNTCCAAACCCCGGGAAACTNTGGACGAGTNTG 647
consensus_2213#1      TGGCCACCA--------------------------------------------------- 542
                        *     *                                                   

consensus_2213#0      NCGGTTATGGTGGGGCCCGCGAAAGACCTTTGGGCCNAACCACNACAGGCGCTTCGTGAG 707
consensus_2213#1      ------------------------------------------------------------
                                                                                  

consensus_2213#0      GNGCCCCACAGAGACACAACGTCACCATTNAAACAACGGNCCCATTGTGGGGNGGNCCCA 767
consensus_2213#1      ------------------------------------------------------------
                                                                                  

consensus_2213#0      CACACACCTTNGTAGCCGGTACCCCAATTTTTCAAACAATTGCCCAAACGAAGGTGAACA 827
consensus_2213#1      ------------------------------------------------------------
                                                                                  

consensus_2213#0      ATTATCCCCCCGNACGANCGAGGGAGATCTACCGCAACAGATGCCACGAGGGAGCAGATA 887
consensus_2213#1      ------------------------------------------------------------
                                                                                  

consensus_2213#0      GTGTGGCAACAAGCCATNGNNNGTGCCATCAATNGGTGGNACACCCCCCANNNCTGGTAG 947
consensus_2213#1      ------------------------------------------------------------
                                                                                  

consensus_2213#0      CGTAGCGCCCCAAACAGGCAGGTTAANAAACGCNATNGCNCCTGCCGAGANCNAGTNNAA 1007
consensus_2213#1      ------------------------------------------------------------
                                                                                  

consensus_2213#0      ANCAAATGGTGTCCCGCCTANTAGTGCAGATATGAGCCAAGAAGCAANGTANGGTGACGG 1067
consensus_2213#1      ------------------------------------------------------------
                                                                                  

consensus_2213#0      ACTTTAATNAACANGCGGCNACAGAGTGTCCACAACAACAACAACATTGTGTGTCCTTTA 1127
consensus_2213#1      ------------------------------------------------------------
                                                                                  

consensus_2213#0      ATGACCAAAAATATNCACGGTGAGNTNGGTATGACCCCCACACTACCGCCAAAAACAGCG 1187
consensus_2213#1      ------------------------------------------------------------
                                                                                  

consensus_2213#0      CTGACATTACTAAACGGGAGGGAAACCCCCCNTGTGTGCACAANACAACTACCGAGGATG 1247
consensus_2213#1      ------------------------------------------------------------
                                                                                  

consensus_2213#0      NATGCANCCCAAATNATCANACGTGCCNAACACACATAATNTTAACCCGCCNGTGGCGAT 1307
consensus_2213#1      ------------------------------------------------------------
                                                                                  

consensus_2213#0      GCATCCCAGGTTTNTTGGCTCCACCCCCCAAATTGCCAAAATTGCAGAACACCANCTAGT 1367
consensus_2213#1      ------------------------------------------------------------
                                                                                  

consensus_2213#0      TATGTGGTGAACCCCCGGGGCATCCAACAACAACCCATNACNCAGGCNCAATAACAACAG 1427
consensus_2213#1      ------------------------------------------------------------
                                                                                  

consensus_2213#0      CAATNCCGGAACTTCCCNCANAACTNCACCAGGCAGTACACTTTGNCACCACCAN 1482
consensus_2213#1      -------------------------------------------------------