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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1152 fasta sequence
[TCTAGCCTATGCAGATCCCCTGCGTATACCATGGCCCGCGGGGCGGTTAGGTTCGTCTTCAGATGCAATAGTTGGGATACTCAGTTACACACACACATGCAGAATGCGCAAAACACANCGAATGCGCATCGGAAGAGCTATGCGTTTTGTGAGAATAGATTTGGTTTTGGCACGTGGCTCAACTGTAATTTGGGTCAACGCTGTAAGTTAATGAGCATTCCAAAGAAAATCAAACTACAACAGATTTGTNGTGAAATCCTACTATTTTGTGGGGCACACGCATCAAAAAGGCTCNATGTGGGAAAGAACGCACGCCAGANAAGAAAGGACTAACGAGAACGTCACCAGAACCATTGCCACAGGTTCATTCCCNGGGTCANTTGGGGGACAGTCTTTACTTTTGCAGTTTGCGCGGTCTCAACGCCGTTTCCTGTCGGCNTTGGCTATATTCCCCTCTCTCTCTCAGGTTCCACTCCTCCATTTTTCTCACTCCGGGTTCCATTAAATCTTGNCACGNCAGTAATGGTCGGTNGTACCAAAACATGCNTAACCNGGTGGTCNGNCCAACANGGNGAAATCCGGATATCACCGGATGNCATCTTCCCGCGTCAGGGGAAAAATGGTTCCGGCATAGCAATAACACTTATACTACTATATGNGTAATACCGCTACAAATNCCGGAAATCACCNACAGACAAAACGGNNATCCCATACTGAACACATNGGGNGNTNTAAACCATCCAAGAACCGTGACGATTCNNGACGAAAATTGGNAGAAACNGATGGGGNAACGCCCTGCANGAAGAGTACAATAANGGCNCGNAAAGGAAAGGNAAACAGNGAAAGGACAATACTATACAAACACAAAAACAGNNAANAAANACAGCNAGGNGATTGATGACGGGACGCAAAGATGTTATTTACCCCGTCTTGACNAGGGGGGGGACCTACCNAAAGCCTTNGGAACACGTGCGNNGAGANTTTTTAANAGNAATGGNAGANTGGGAAAAAAAGCCCCGCGATTAAACACAAGACAAAAACCGAGTTGNGACAATCCAACANTGTGCACANGCCAAGCAATCAAGAACAAGGCGACAGCNAAATTNATTCCACAAAGGTTTGAAATGGNAGNATTGGANNTAAGATATGGAC]
[+] EMBL AL696545 [TCTAGCCTATGCAGATCCCCTGCGTATACCATGGCCCGCGGGGCGGTTAGGTTCGTCTTCAGATGCAATAGTTGGGATACTCAGTTACACACACACATGCAGAATGCGCAAAACACANCGAATGCGCATCGGAAGAGCTATGCGTTTTGTGAGAATAGATTTGGTTTTGGCACGTGGCTCAACTGTAATTTGGGTCAACGCTGTAAGTTAATGAGCATTCCAAAGAAAATCAAACTACAACAGATTTGTNGTGAAATCCTACTATTTTGTGGGGCACACGCATCAAAAAGGCTCNATGTGGGAAAGAACGCACGCCAGANAAGAAAGGACTAACGAGAACGTCACCAGAACCATTGCCACAGGTTCATTCCCNGGGTCANTTGGGGGACAGTCTTTACTTTTGCAGTTTGCGCGGTCTCAACGCCGTTTCCTGTCGGCNTTGGCTATATTCCCCTCTCTCTCTCAGGTTCCACTCCTCCATTTTTCTCACTCCGGGTTCCATTAAATCTTGNCACGNCAGTAATGGTCGGTNGTACCAAAACATGCNTAACCNGGTGGTCNGNCCAACANGGNGAAATCCGGATATCACCGGATGNCATCTTCCCGCGTCAGGGGAAAAATGGTTCCGGCATAGCAATAACACTTATACTACTATATGNGTAATACCGCTACAAATNCCGGAAATCACCNACAGACAAAACGGNNATCCCATACTGAACACATNGGGNGNTNTAAACCATCCAAGAACCGTGACGATTCNNGACGAAAATTGGNAGAAACNGATGGGGNAACGCCCTGCANGAAGAGTACAATAANGGCNCGNAAAGGAAAGGNAAACAGNGAAAGGACAATACTATACAAACACAAAAACAGNNAANAAANACAGCNAGGNGATTGATGACGGGACGCAAAGATGTTATTTACCCCGTCTTGACNAGGGGGGGGACCTACCNAAAGCCTTNGGAACACGTGCGNNGAGANTTTTTAANAGNAATGGNAGANTGGGAAAAAAAGCCCCGCGATTAAACACAAGACAAAAACCGAGTTGNGACAATCCAACANTGTGCACANGCCAAGCAATCAAGAACAAGGCGACAGCNAAATTNATTCCACAAAGGTTTGAAATGGNAGNATTGGANNTAAGATATGGAC]
consensusID : consensus_2214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence
[CCAATGGCCCGCGGGGCGGTTAGGTTCCGTCTTCAGATGCAAATAGTTGGGATACTCAGTTACACACACACATGCAGAATGCGCAAAACACACCGAATGCGCATCGGAAGAGCTATGCGTTTTGTGAGAATAGATTTGGTTTTGGCACGTGGCTCAACTGTAATTGGGTCAACGCTGTAAGTTAATGAGCATTCCAAAGAAAATCAAACCTACACAGATTGGGTGAAATCCTACTATTTTGCGCAAAGAAGAAAAAGGCTCAGTGTGGAAGAAGCAGCAGAANGAAGGACTAAGAGAACGTCACAGACCATTGAAAGGTTCATTCCAGGGTCATTTGGCGACGTCTTTACTTTGCGTTGCGCGTCTCACGCGTTTCTGTCGCTTGCTATCTCCCTCTCTCTCTAGTTCACTCTCATTTTCTACTCGGTCATTATCTGCAGCGTATGGTGTGTACAAATGCTACTGTTGTTGCTTTTGTTTTTCGTTCCGTTGCTCTCCGGTCGGGAAATGTCCGCTACATACATCTCTCCTATTGCTAATACCTACATCCGGACTCGCACCGAAAACGGATCCATATGAAATGGGGCTTAAAATCGAGGACCGCGCGTTCGCGATATGTGATTGTGGNACGCCTGGGACGTATACGGCCCGTAAGGG]
[+] EMBL BX628317 [CCAATGGCCCGCGGGGCGGTTAGGTTCCGTCTTCAGATGCAAATAGTTGGGATACTCAGTTACACACACACATGCAGAATGCGCAAAACACACCGAATGCGCATCGGAAGAGCTATGCGTTTTGTGAGAATAGATTTGGTTTTGGCACGTGGCTCAACTGTAATTGGGTCAACGCTGTAAGTTAATGAGCATTCCAAAGAAAATCAAACCTACACAGATTGGGTGAAATCCTACTATTTTGCGCAAAGAAGAAAAAGGCTCAGTGTGGAAGAAGCAGCAGAANGAAGGACTAAGAGAACGTCACAGACCATTGAAAGGTTCATTCCAGGGTCATTTGGCGACGTCTTTACTTTGCGTTGCGCGTCTCACGCGTTTCTGTCGCTTGCTATCTCCCTCTCTCTCTAGTTCACTCTCATTTTCTACTCGGTCATTATCTGCAGCGTATGGTGTGTACAAATGCTACTGTTGTTGCTTTTGTTTTTCGTTCCGTTGCTCTCCGGTCGGGAAATGTCCGCTACATACATCTCTCCTATTGCTAATACCTACATCCGGACTCGCACCGAAAACGGATCCATATGAAATGGGGCTTAAAATCGAGGACCGCGCGTTCGCGATATGTGATTGTGGNACGCCTGGGACGTATACGGCCCGTAAGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2214#0 TCTAGCCTATGCAGATCCCCTGCGTATACCATGGCCCGCGGGGCGGTTAGGTTC-GTCTT 59
consensus_2214#1 ---------------------------CCAATGGCCCGCGGGGCGGTTAGGTTCCGTCTT 33
* ************************ *****
consensus_2214#0 CAGATGCAA-TAGTTGGGATACTCAGTTACACACACACATGCAGAATGCGCAAAACACAN 118
consensus_2214#1 CAGATGCAAATAGTTGGGATACTCAGTTACACACACACATGCAGAATGCGCAAAACACAC 93
********* *************************************************
consensus_2214#0 CGAATGCGCATCGGAAGAGCTATGCGTTTTGTGAGAATAGATTTGGTTTTGGCACGTGGC 178
consensus_2214#1 CGAATGCGCATCGGAAGAGCTATGCGTTTTGTGAGAATAGATTTGGTTTTGGCACGTGGC 153
************************************************************
consensus_2214#0 TCAACTGTAATTTGGGTCAACGCTGTAAGTTAATGAGCATTCCAAAGAAAATCAAACTAC 238
consensus_2214#1 TCAACTGTAATT-GGGTCAACGCTGTAAGTTAATGAGCATTCCAAAGAAAATCAAACCTA 212
************ ********************************************
consensus_2214#0 AACAGATTTGTNGTGAAATCCTACTATTTTGTGGGGCACACGCATCAAAAAGGCTCNATG 298
consensus_2214#1 CACAGATTG--GGTGAAATCCTACTATTTTGCG-----CAAAGAAGAAAAAGGCTCAGTG 265
******* ******************* * ** * ********** **
consensus_2214#0 TGGGAAAGAACGCACGCCAGANAAGAAAGGACTAACGAGAACGTCACCAGAACCATTGCC 358
consensus_2214#1 TGGAAGAA-------GCAGCAGAANGAAGGACTAA-GAGAACGTCAC--AGACCATTG-- 313
*** * * ** * ** ********* *********** *******
consensus_2214#0 ACAGGTTCATTCCCNGGGTCANTTGGGGGACAGTCTTTACTTTTGCAGTTTGCGCGGTCT 418
consensus_2214#1 AAAGGTTCATTCC-AGGGTCATTTGGCGA--CGTCTTTACTTT-GCG--TTGCGCG-TCT 366
* *********** ****** **** * *********** ** ******* ***
consensus_2214#0 CAACGCCGTTTCCTGTCGGCNTTGGCTATATTCCCCTCTCTCTCTCAGGTTCCACTCCTC 478
consensus_2214#1 CA-CGCG--TTTCTGTCG---CTTGCTATCTCCCTCTCTCTCT-----AGTTCACTC--T 413
** *** ** ****** * ***** * ** ******** * *****
consensus_2214#0 CATTTTTCTCACTCCGGGTTCCATTAAATCTTGNCACGNCAGTAATGGTCGGTNGTACCA 538
consensus_2214#1 CATTTTCT--ACTCGG----TCATTA---TCTGCAGCGTATGGTGTGTACAAATGCTACT 464
****** **** * ***** ** ** * ** * * *
consensus_2214#0 AAACATGCNTAACCNGGTGGTCNGNCCAACANGGNGAAATCCGGATATCACCGGATGNCA 598
consensus_2214#1 GTTGTTGCTT---TTGTTTTTCGTTCCGTTGCTCTCCGGTCGGGAAATGTCCGCTACATA 521
*** * * * ** ** ** *** ** *** *
consensus_2214#0 TCTTCCCGCGTCAGGGGAAAAATGGTTCCGGCATAGCAATAACACTTATACTACTATATG 658
consensus_2214#1 CATCTCTCCTATTGCTAATACCTACATCCGGACTCGCACCGAAA-----ACGGATCCATA 576
* * * * * * * ***** * *** * * ** * **
consensus_2214#0 NGTAATACCGCTACAAATNCCGGAAATCACCNACAGACAAAACGGNNATCCCATACTGAA 718
consensus_2214#1 TGAAATGGGGCTTAAAATC--GAGGACCGCGCGTTCGCGATATG-TGAT----TGTGGNA 629
* *** *** **** * * * * * * * * ** * * *
consensus_2214#0 CACATNGGGNGNTNTAAACCATCCAAGAACCGTGACGATTCNNGACGAAAATTGGNAGAA 778
consensus_2214#1 CGCCTGGGACGT-ATACGGCCCGTAAGGG------------------------------- 657
* * * ** * ** * ***
consensus_2214#0 ACNGATGGGGNAACGCCCTGCANGAAGAGTACAATAANGGCNCGNAAAGGAAAGGNAAAC 838
consensus_2214#1 ------------------------------------------------------------
consensus_2214#0 AGNGAAAGGACAATACTATACAAACACAAAAACAGNNAANAAANACAGCNAGGNGATTGA 898
consensus_2214#1 ------------------------------------------------------------
consensus_2214#0 TGACGGGACGCAAAGATGTTATTTACCCCGTCTTGACNAGGGGGGGGACCTACCNAAAGC 958
consensus_2214#1 ------------------------------------------------------------
consensus_2214#0 CTTNGGAACACGTGCGNNGAGANTTTTTAANAGNAATGGNAGANTGGGAAAAAAAGCCCC 1018
consensus_2214#1 ------------------------------------------------------------
consensus_2214#0 GCGATTAAACACAAGACAAAAACCGAGTTGNGACAATCCAACANTGTGCACANGCCAAGC 1078
consensus_2214#1 ------------------------------------------------------------
consensus_2214#0 AATCAAGAACAAGGCGACAGCNAAATTNATTCCACAAAGGTTTGAAATGGNAGNATTGGA 1138
consensus_2214#1 ------------------------------------------------------------
consensus_2214#0 NNTAAGATATGGAC 1152
consensus_2214#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||