These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence [GAACGAATCTTAAGTATATTTAATTTATTGCCATTTTATCGCATCATAATTGAGCGGGGTGATGTGTCATTTGCCTACATTCACGCAGATGACGCAAAACCGATGTGCATCTTCGAGTGAAGTTCCGGTGAAACGTGCAGTGTACCAAATAGTGTCAAACAGGCAGTGATCATGCAGAGAAAAACTTTGGTTCAACCAGTGCTACGGTTTGTTCGGCTGGTGGGACGGACTGCACGGCACGGACAGTGAGTTCCGCAAGAAGAAGCAGTACCAGAGGCACCATCGCATCTTCAGCCTCAAATCGGCCCGCGAGCTCGTCCCGGAGCATTAGCCGCCCGTTAGGATAAGGCTATAGGCATAGAAGGAGCGCAGGAGTTTGCCAACCGAACCGAACCCACCAAGCCATCCCTTCAAGGTTCAAAACGCAAGGTTTTGGGGTGGGACAGACCCTGCGAAACCTCTCCGGTGAGCTGAGCGGAATTTAAATGGACATAATTTAAAAACAAATAACCAATCGGCATCACAGAGCGTGCTTTGAAAGGCGCTAGAGTGTGCTTGCGTGTGGTTTTGCGCGTCTGTGTTGCGTAGTCTAGCAGCGTCCCGTTTGGTACGCGCCAACTGTATTATTTACGGCATAGTATTATCGTTATACATTATACCCTTTTTTCTCCAACTCCTCGTGGGGTATTTTTTGTTTTCCTTTGGAGGAACTGATTTTTAAGTAACTTTTAGAGGAGATGGGCTGGCATCTTTACTGCTAACCAACAACAACAATGTCT] [+] EMBL BX622654 [GAACGAATCTTAAGTATATTTAATTTATTGCCATTTTATCGCATCATAATTGAGCGGGGTGATGTGTCATTTGCCTACATTCACGCAGATGACGCAAAACCGATGTGCATCTTCGAGTGAAGTTCCGGTGAAACGTGCAGTGTACCAAATAGTGTCAAACAGGCAGTGATCATGCAGAGAAAAACTTTGGTTCAACCAGTGCTACGGTTTGTTCGGCTGGTGGGACGGACTGCACGGCACGGACAGTGAGTTCCGCAAGAAGAAGCAGTACCAGAGGCACCATCGCATCTTCAGCCTCAAATCGGCCCGCGAGCTCGTCCCGGAGCATTAGCCGCCCGTTAGGATAAGGCTATAGGCATAGAAGGAGCGCAGGAGTTTGCCAACCGAACCGAACCCACCAAGCCATCCCTTCAAGGTTCAAAACGCAAGGTTTTGGGGTGGGACAGACCCTGCGAAACCTCTCCGGTGAGCTGAGCGGAATTTAAATGGACATAATTTAAAAACAAATAACCAATCGGCATCACAGAGCGTGCTTTGAAAGGCGCTAGAGTGTGCTTGCGTGTGGTTTTGCGCGTCTGTGTTGCGTAGTCTAGCAGCGTCCCGTTTGGTACGCGCCAACTGTATTATTTACGGCATAGTATTATCGTTATACATTATACCCTTTTTTCTCCAACTCCTCGTGGGGTATTTTTTGTTTTCCTTTGGAGGAACTGATTTTTAAGTAACTTTTAGAGGAGATGGGCTGGCATCTTTACTGCTAACCAACAACAACAATGTCT] consensusID : consensus_2235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [TGTACGTAGGGCCCGCCCTCATGACCAGCCACGTGTTCACGATCGTCATCTGGTTCANCGTTCGTCATGATGGACACGCTGGTGGACCATTCCGGGTATCATCTGCCGGTGCTCGGCAGACTCCGAAATGCACGATTACCACCATCTACAAGTACAACCAGTGCTACGGTTTGTTCGGCTGGTGGGACGGACTGCACGGCACGGACAGTGAGTTCCGCAAGAAGAAGCAGTACCAGCGGCACCATCGCATCTTCAGCCTCAAATCGGCCCGCGAGCTCGTCCCGGAGCATTAGCCGCCCGTTAGGATAAGGCTATAGGCATAGAAGGAGCGCAGGAGTTTGCCAACCGAACCGAACCCACCAAGCCATCCCTTCAAGGTTCAAAACGCAAGGTTTTGGGGTGGGACAGACCCTGCGAAACCTCTCCGGTGAGCTGAGCG] [+] EMBL BX619883 [TGTACGTAGGGCCCGCCCTCATGACCAGCCACGTGTTCACGATCGTCATCTGGTTCANCGTTCGTCATGATGGACACGCTGGTGGACCATTCCGGGTATCATCTGCCGGTGCTCGGCAGACTCCGAAATGCACGATTACCACCATCTACAAGTACAACCAGTGCTACGGTTTGTTCGGCTGGTGGGACGGACTGCACGGCACGGACAGTGAGTTCCGCAAGAAGAAGCAGTACCAGCGGCACCATCGCATCTTCAGCCTCAAATCGGCCCGCGAGCTCGTCCCGGAGCATTAGCCGCCCGTTAGGATAAGGCTATAGGCATAGAAGGAGCGCAGGAGTTTGCCAACCGAACCGAACCCACCAAGCCATCCCTTCAAGGTTCAAAACGCAAGGTTTTGGGGTGGGACAGACCCTGCGAAACCTCTCCGGTGAGCTGAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2235#0 GAACGAATCTTAAGTATATTTAATTTATTGCCATTTTATCGCATCATAATTGAGCGGGGT 60 consensus_2235#1 ----------------------------------------------TGTACGTAGGGCCC 14 * * ** consensus_2235#0 GATGTGTCATTTGCCTACATTCACGCAGATGACG-CAAAACCGATGTGCATCTTCGAGTG 119 consensus_2235#1 GCCCTCATGACCAGCCACGTGTTCACGATCGTCATCTGGTTCANCGTTCGTCAT-GATGG 73 * * * ** * * * * * * * ** * ** * ** * consensus_2235#0 AAGTTCCGGTGAAACGTGCAGTGTACCAAATA---GTGTCAAACAGGCAGTGATCATGCA 176 consensus_2235#1 ACACGCTGGTGGACCATTCCGGGTATCATCTGCCGGTGCTCGGCAGACTCCGAA-ATGCA 132 * * **** * * * * * *** ** * *** *** * ** ***** consensus_2235#0 -GAGAAAAACTTT-----GGTTCAACCAGTGCTACGGTTTGTTCGGCTGGTGGGACGGAC 230 consensus_2235#1 CGATTACCACCATCTACAAGTACAACCAGTGCTACGGTTTGTTCGGCTGGTGGGACGGAC 192 ** * ** * ** ************************************** consensus_2235#0 TGCACGGCACGGACAGTGAGTTCCGCAAGAAGAAGCAGTACCAGAGGCACCATCGCATCT 290 consensus_2235#1 TGCACGGCACGGACAGTGAGTTCCGCAAGAAGAAGCAGTACCAGCGGCACCATCGCATCT 252 ******************************************** *************** consensus_2235#0 TCAGCCTCAAATCGGCCCGCGAGCTCGTCCCGGAGCATTAGCCGCCCGTTAGGATAAGGC 350 consensus_2235#1 TCAGCCTCAAATCGGCCCGCGAGCTCGTCCCGGAGCATTAGCCGCCCGTTAGGATAAGGC 312 ************************************************************ consensus_2235#0 TATAGGCATAGAAGGAGCGCAGGAGTTTGCCAACCGAACCGAACCCACCAAGCCATCCCT 410 consensus_2235#1 TATAGGCATAGAAGGAGCGCAGGAGTTTGCCAACCGAACCGAACCCACCAAGCCATCCCT 372 ************************************************************ consensus_2235#0 TCAAGGTTCAAAACGCAAGGTTTTGGGGTGGGACAGACCCTGCGAAACCTCTCCGGTGAG 470 consensus_2235#1 TCAAGGTTCAAAACGCAAGGTTTTGGGGTGGGACAGACCCTGCGAAACCTCTCCGGTGAG 432 ************************************************************ consensus_2235#0 CTGAGCGGAATTTAAATGGACATAATTTAAAAACAAATAACCAATCGGCATCACAGAGCG 530 consensus_2235#1 CTGAGCG----------------------------------------------------- 439 ******* consensus_2235#0 TGCTTTGAAAGGCGCTAGAGTGTGCTTGCGTGTGGTTTTGCGCGTCTGTGTTGCGTAGTC 590 consensus_2235#1 ------------------------------------------------------------ consensus_2235#0 TAGCAGCGTCCCGTTTGGTACGCGCCAACTGTATTATTTACGGCATAGTATTATCGTTAT 650 consensus_2235#1 ------------------------------------------------------------ consensus_2235#0 ACATTATACCCTTTTTTCTCCAACTCCTCGTGGGGTATTTTTTGTTTTCCTTTGGAGGAA 710 consensus_2235#1 ------------------------------------------------------------ consensus_2235#0 CTGATTTTTAAGTAACTTTTAGAGGAGATGGGCTGGCATCTTTACTGCTAACCAACAACA 770 consensus_2235#1 ------------------------------------------------------------ consensus_2235#0 ACAATGTCT 779 consensus_2235#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||