These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [AGCAGAATCGCCAGAGGTTGCAGATGAACGTTGGCACGATGCCACAGTTTCCTACGCTCAGCGCAACAGCCGCCACCGCAGCAAGCTGGCATGCATCATCTTTCTCACCAACATCAGCCTCACTCCATGCAGACCGTGGCGCAGAACGGTCCCAACACCAATGGAATGCTTTCGCAGGGGCGCACCACAACACGTCGTTGGCTGGCAGTTGGCAACCAGCAGCAGCAGCAGCAGTCCCACGACGTCGGTCGCTCCACAGACGATGCCAAATATGCCGATGCCTCAGCAGCAGCAGCTCGGGGGAATGCCGCCAAGGATTTGCCAATCCTACGTCACCTCCGCCTGTGGGAATGTCCGGCGGTCCGCATCGCACCATCAGATGCAACCGGCAACANCCAATCCGAATCAAGCAAACGCTTCCGCAGATGCGACCGGGCGGAGGACAGGCTCCCGTCAGCTATCCGAGTTACGTCCCCCCAGGCAGCAGCCAACCAGCAGCAAGCAACAGTGTCNCCAACAGATGCCACAAACCGCATCCCGCCAGGGAATGC] [+] EMBL AL696743 [AGCAGAATCGCCAGAGGTTGCAGATGAACGTTGGCACGATGCCACAGTTTCCTACGCTCAGCGCAACAGCCGCCACCGCAGCAAGCTGGCATGCATCATCTTTCTCACCAACATCAGCCTCACTCCATGCAGACCGTGGCGCAGAACGGTCCCAACACCAATGGAATGCTTTCGCAGGGGCGCACCACAACACGTCGTTGGCTGGCAGTTGGCAACCAGCAGCAGCAGCAGCAGTCCCACGACGTCGGTCGCTCCACAGACGATGCCAAATATGCCGATGCCTCAGCAGCAGCAGCTCGGGGGAATGCCGCCAAGGATTTGCCAATCCTACGTCACCTCCGCCTGTGGGAATGTCCGGCGGTCCGCATCGCACCATCAGATGCAACCGGCAACANCCAATCCGAATCAAGCAAACGCTTCCGCAGATGCGACCGGGCGGAGGACAGGCTCCCGTCAGCTATCCGAGTTACGTCCCCCCAGGCAGCAGCCAACCAGCAGCAAGCAACAGTGTCNCCAACAGATGCCACAAACCGCATCCCGCCAGGGAATGC] consensusID : consensus_2243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [GCAGATGCGACCGGGCGGAGGACAGCCTCCCGTCAGCTATCCGAGTTACGTCCCCCAGCAGCAGCAACAGCAGCAGCCACCAGTGTCCCAACAGATGCCACAAACCGCCATCCCGCAGGGAAATGCCGGGCGCTGGTGGACCACCACCACCATCAGCCCAACCGAACGCGAACCATCATCCAAACCAGCAGCAGATGAGCATGCCACCGGCCCACTATCCTCCCACATCTGGTGCACCAACTCACCATCATCCGCAGCAGCAGCAGCAACAACCGCAGCAGCAACAGTTCATGCCACAGATGGGACCACCGCAGATGACCAAC] [+] EMBL BX623811 [GCAGATGCGACCGGGCGGAGGACAGCCTCCCGTCAGCTATCCGAGTTACGTCCCCCAGCAGCAGCAACAGCAGCAGCCACCAGTGTCCCAACAGATGCCACAAACCGCCATCCCGCAGGGAAATGCCGGGCGCTGGTGGACCACCACCACCATCAGCCCAACCGAACGCGAACCATCATCCAAACCAGCAGCAGATGAGCATGCCACCGGCCCACTATCCTCCCACATCTGGTGCACCAACTCACCATCATCCGCAGCAGCAGCAGCAACAACCGCAGCAGCAACAGTTCATGCCACAGATGGGACCACCGCAGATGACCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2243#0 AGCAGAATCGCCAGAGGTTGCAGATGAACGTTGGCACGATGCCACAGTTTCCTACGCTCA 60 consensus_2243#1 ------------------------------------------------------------ consensus_2243#0 GCGCAACAGCCGCCACCGCAGCAAGCTGGCATGCATCATCTTTCTCACCAACATCAGCCT 120 consensus_2243#1 ------------------------------------------------------------ consensus_2243#0 CACTCCATGCAGACCGTGGCGCAGAACGGTCCCAACACCAATGGAATGCTTTCGCAGGGG 180 consensus_2243#1 ------------------------------------------------------------ consensus_2243#0 CGCACCACAACACGTCGTTGGCTGGCAGTTGGCAACCAGCAGCAGCAGCAGCAGTCCCAC 240 consensus_2243#1 --------------------------------------------GCAGATGCGACCGGGC 16 **** ** * * consensus_2243#0 GACGTCGGTCGCTCCACAGACGATGCCAAATATGCCGAT--GCCTCAGCAGCAGCAGCTC 298 consensus_2243#1 GGAGGACAGCCTCCCGTCAGCTATCCGAGTTACGTCCCCCAGCAGCAGCAACAGCAGCAG 76 * * * ** * ** * * ** * * ** ***** ******* consensus_2243#0 GGGGGAATGCCGCCAAGGATTTGCCAATCCTACGTCACCTCCGCCTGTGGGAATGTCCGG 358 consensus_2243#1 CCACCAGTGTCCCAACAGATGCCACAAACCGCCATCCCGCAGGGAAATGCCGGGCGCTGG 136 * ** * * * *** *** ** * ** * * ** * ** consensus_2243#0 CGGTCCGCATCGCACCATCAGATGCAACCGGCAACANCCAATCCGAATCAAGCAAAC-GC 417 consensus_2243#1 TGGACCACCAC-CACCATCAG-CCCAACCGAACGCGAACCATC--ATCCAAACCAGCAGC 192 ** ** * * ********* ****** * * *** * *** * * * ** consensus_2243#0 TTCCGCAGATGCGACCGGGCGGAGGACAGGCTCCCGTCAGCTATCCGAGTTACGTCCCCC 477 consensus_2243#1 AGATGAGCATGCCACCGGCCC-ACTATCCTCCCACATCTGGTGCACCAACT-CACCATCA 250 * **** ***** * * * * * * ** * * * * * * * * consensus_2243#0 CAGGCAGCAGCCAACCAGCAGCAAGCAACAGTGTCNCCAACAGATGCCACAAACCGCATC 537 consensus_2243#1 TCCGCAGCAGC--AGCAGCAACAACCG-CAGCAGCAACAGTTCATGCCACAGATGGGACC 307 ******** * ***** *** * *** * ** ******** * * * * consensus_2243#0 CCGCCAGGGAATGC-- 551 consensus_2243#1 ACCGCAGATGACCAAC 323 * *** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||