cluster # 2264

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Anopheles gambiae
cluster # 2264 cluster # 2264 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2264#0 length = 537 sequences # 1

consensus_2264#1 length = 210 sequences # 1

consensusID : consensus_2264#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence

                              [GCAAAATCGGAAGCTTATTTTGTTCATAATTTCAATCGTTCTGCAAATAAGTGTTATCCGACGCTATGGAATCCACCCACAACAGTGCTAAAATATACTTACTTCAAGAGGATCGCGAGAAAAGCTTTAAACATTGGCCATTTTCCGATGATAAACAATGCAGCATACAGAAGATGGCTGAGGCCGGCTTCTATTGGCACGGGACGGAGACAGAGATAGACATAGCGGCTTGCTTCGTGTGTGGCAAAGAGCTGGACGGTTGGGAAGAGTCGGACGATCCGTGGAGCGAACACCGGAAGCATGCACCACAGTGTCCGTTTGTGAAATTTGGCCGCCCAGAGACGCATCTAACGTGCGATGAATTTGTCACTATTATGATGGCCACGGTGAAGACGCGATATGTCAACAACTACACCACCCTCAAGACCAACGGCAAGCTGCTGATAGAGAAGAAGCGAAAGGAAATGGAGAAACTGTTACGCACCAACTAGTATTAAGCTGCATATTAGAGAAATACATCGAACCATGTAAAACAAT]

[+] EMBL BX612873             [GCAAAATCGGAAGCTTATTTTGTTCATAATTTCAATCGTTCTGCAAATAAGTGTTATCCGACGCTATGGAATCCACCCACAACAGTGCTAAAATATACTTACTTCAAGAGGATCGCGAGAAAAGCTTTAAACATTGGCCATTTTCCGATGATAAACAATGCAGCATACAGAAGATGGCTGAGGCCGGCTTCTATTGGCACGGGACGGAGACAGAGATAGACATAGCGGCTTGCTTCGTGTGTGGCAAAGAGCTGGACGGTTGGGAAGAGTCGGACGATCCGTGGAGCGAACACCGGAAGCATGCACCACAGTGTCCGTTTGTGAAATTTGGCCGCCCAGAGACGCATCTAACGTGCGATGAATTTGTCACTATTATGATGGCCACGGTGAAGACGCGATATGTCAACAACTACACCACCCTCAAGACCAACGGCAAGCTGCTGATAGAGAAGAAGCGAAAGGAAATGGAGAAACTGTTACGCACCAACTAGTATTAAGCTGCATATTAGAGAAATACATCGAACCATGTAAAACAAT]




>consensus_2264#0
GCAAAATCGGAAGCTTATTTTGTTCATAATTTCAATCGTTCTGCAAATAAGTGTTATCCG
ACGCTATGGAATCCACCCACAACAGTGCTAAAATATACTTACTTCAAGAGGATCGCGAGA
AAAGCTTTAAACATTGGCCATTTTCCGATGATAAACAATGCAGCATACAGAAGATGGCTG
AGGCCGGCTTCTATTGGCACGGGACGGAGACAGAGATAGACATAGCGGCTTGCTTCGTGT
GTGGCAAAGAGCTGGACGGTTGGGAAGAGTCGGACGATCCGTGGAGCGAACACCGGAAGC
ATGCACCACAGTGTCCGTTTGTGAAATTTGGCCGCCCAGAGACGCATCTAACGTGCGATG
AATTTGTCACTATTATGATGGCCACGGTGAAGACGCGATATGTCAACAACTACACCACCC
TCAAGACCAACGGCAAGCTGCTGATAGAGAAGAAGCGAAAGGAAATGGAGAAACTGTTAC
GCACCAACTAGTATTAAGCTGCATATTAGAGAAATACATCGAACCATGTAAAACAAT

consensusID : consensus_2264#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 210
fasta sequence

                              [GGCAAGAATCGCCCCGACCGTTTGAAGATGGCTGAGGGCCGGCTTCTATTGGCACGGGACGTGAGACAGAGATAGACATAGCGGCTTGCTTCGTGTGTGGCAAAGAGCTGGACGGTTGGGAAGAGTCGGACGATCCGTGGAGCGAACACCGGAAGCATGCACCACAGTGTCCGTTTGTGAAAATTTGGCCGCCAGAGACGCATCTAACGT]

[+] EMBL AL696860             [GGCAAGAATCGCCCCGACCGTTTGAAGATGGCTGAGGGCCGGCTTCTATTGGCACGGGACGTGAGACAGAGATAGACATAGCGGCTTGCTTCGTGTGTGGCAAAGAGCTGGACGGTTGGGAAGAGTCGGACGATCCGTGGAGCGAACACCGGAAGCATGCACCACAGTGTCCGTTTGTGAAAATTTGGCCGCCAGAGACGCATCTAACGT]




>consensus_2264#1
GGCAAGAATCGCCCCGACCGTTTGAAGATGGCTGAGGGCCGGCTTCTATTGGCACGGGAC
GTGAGACAGAGATAGACATAGCGGCTTGCTTCGTGTGTGGCAAAGAGCTGGACGGTTGGG
AAGAGTCGGACGATCCGTGGAGCGAACACCGGAAGCATGCACCACAGTGTCCGTTTGTGA
AAATTTGGCCGCCAGAGACGCATCTAACGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2264#0      GCAAAATCGGAAGCTTATTTTGTTCATAATTTCAATCGTTCTGCAAATAAGTGTTATCCG 60
consensus_2264#1      ------------------------------------------------------------
                                                                                  

consensus_2264#0      ACGCTATGGAATCCACCCACAACAGTGCTAAAATATACTTACTTCAAGAGGATCGCGAGA 120
consensus_2264#1      ------------------------------------------------------------
                                                                                  

consensus_2264#0      AAAGCTTTAAACATTGGCCATTTTCCGATGATAAACAATGCAGCATACAGAAGATGGCTG 180
consensus_2264#1      --------------------------GGCAAGAATCGCCCCGACCGTTTGAAGATGGCTG 34
                                                *   * ** *    *  *     ***********

consensus_2264#0      AGG-CCGGCTTCTATTGGCACGGGACG-GAGACAGAGATAGACATAGCGGCTTGCTTCGT 238
consensus_2264#1      AGGGCCGGCTTCTATTGGCACGGGACGTGAGACAGAGATAGACATAGCGGCTTGCTTCGT 94
                      *** *********************** ********************************

consensus_2264#0      GTGTGGCAAAGAGCTGGACGGTTGGGAAGAGTCGGACGATCCGTGGAGCGAACACCGGAA 298
consensus_2264#1      GTGTGGCAAAGAGCTGGACGGTTGGGAAGAGTCGGACGATCCGTGGAGCGAACACCGGAA 154
                      ************************************************************

consensus_2264#0      GCATGCACCACAGTGTCCGTTTGTGAAA-TTTGGCCGCCCAGAGACGCATCTAACGTGCG 357
consensus_2264#1      GCATGCACCACAGTGTCCGTTTGTGAAAATTTGGCCGCC-AGAGACGCATCTAACGT--- 210
                      **************************** ********** *****************   

consensus_2264#0      ATGAATTTGTCACTATTATGATGGCCACGGTGAAGACGCGATATGTCAACAACTACACCA 417
consensus_2264#1      ------------------------------------------------------------
                                                                                  

consensus_2264#0      CCCTCAAGACCAACGGCAAGCTGCTGATAGAGAAGAAGCGAAAGGAAATGGAGAAACTGT 477
consensus_2264#1      ------------------------------------------------------------
                                                                                  

consensus_2264#0      TACGCACCAACTAGTATTAAGCTGCATATTAGAGAAATACATCGAACCATGTAAAACAAT 537
consensus_2264#1      ------------------------------------------------------------