cluster # 2267

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Anopheles gambiae
cluster # 2267 cluster # 2267 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2267#0 length = 577 sequences # 1

consensus_2267#1 length = 563 sequences # 1

consensusID : consensus_2267#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence

                              [CCGCGGAAAGAATATCGTCCGCAATTTGTGCGTTGGTCGTGAACGGTGGAATAATGGCGGATGAAAACGAAAACTCGTGCGATAAGTTCGACGACGTGAAGCCGGATAAGATGTTTACGCTGAAGAAGTGGAATGCGGTCGCGATGTGGAGCTGGGACGTGGAGTGCGATACGTGCGCTATCTGCCGTGTGCAAGTCATGGACGCTTGCCTACGCTGCCAGGCGGAGAGCAAAAAGGACACGCTCGGCCGCCAGGACTGTGTCGTCGTGTGGGGCGAATGCAACCATTCCTTTCACCACTGCTGCATGTCGCTGTGGATTAAGCAGAACAATCGGTGCCCGCTGTGCCAGCAAGAGTGGTCCATCCAGCGCATGGGCAAGTGAGCGCTGGGCCAACCAATCAACCAACCATCCAACCAATTCATGGACGCAAACGTGTTCTACTATTACGCATTTCGGAGAAAAACATTCATAGGAGATTTAAAGTGGAAAGGAGAGAAAGAAACGTCATACGAATCTCGTTGGTTGCATGTTGTTGTCTAGATTTTTCTTTTTTTAAATAAATAGGTGACATCGCG]

[+] EMBL BM591754             [CCGCGGAAAGAATATCGTCCGCAATTTGTGCGTTGGTCGTGAACGGTGGAATAATGGCGGATGAAAACGAAAACTCGTGCGATAAGTTCGACGACGTGAAGCCGGATAAGATGTTTACGCTGAAGAAGTGGAATGCGGTCGCGATGTGGAGCTGGGACGTGGAGTGCGATACGTGCGCTATCTGCCGTGTGCAAGTCATGGACGCTTGCCTACGCTGCCAGGCGGAGAGCAAAAAGGACACGCTCGGCCGCCAGGACTGTGTCGTCGTGTGGGGCGAATGCAACCATTCCTTTCACCACTGCTGCATGTCGCTGTGGATTAAGCAGAACAATCGGTGCCCGCTGTGCCAGCAAGAGTGGTCCATCCAGCGCATGGGCAAGTGAGCGCTGGGCCAACCAATCAACCAACCATCCAACCAATTCATGGACGCAAACGTGTTCTACTATTACGCATTTCGGAGAAAAACATTCATAGGAGATTTAAAGTGGAAAGGAGAGAAAGAAACGTCATACGAATCTCGTTGGTTGCATGTTGTTGTCTAGATTTTTCTTTTTTTAAATAAATAGGTGACATCGCG]




>consensus_2267#0
CCGCGGAAAGAATATCGTCCGCAATTTGTGCGTTGGTCGTGAACGGTGGAATAATGGCGG
ATGAAAACGAAAACTCGTGCGATAAGTTCGACGACGTGAAGCCGGATAAGATGTTTACGC
TGAAGAAGTGGAATGCGGTCGCGATGTGGAGCTGGGACGTGGAGTGCGATACGTGCGCTA
TCTGCCGTGTGCAAGTCATGGACGCTTGCCTACGCTGCCAGGCGGAGAGCAAAAAGGACA
CGCTCGGCCGCCAGGACTGTGTCGTCGTGTGGGGCGAATGCAACCATTCCTTTCACCACT
GCTGCATGTCGCTGTGGATTAAGCAGAACAATCGGTGCCCGCTGTGCCAGCAAGAGTGGT
CCATCCAGCGCATGGGCAAGTGAGCGCTGGGCCAACCAATCAACCAACCATCCAACCAAT
TCATGGACGCAAACGTGTTCTACTATTACGCATTTCGGAGAAAAACATTCATAGGAGATT
TAAAGTGGAAAGGAGAGAAAGAAACGTCATACGAATCTCGTTGGTTGCATGTTGTTGTCT
AGATTTTTCTTTTTTTAAATAAATAGGTGACATCGCG

consensusID : consensus_2267#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 563
fasta sequence

                              [AGATCGGCCCGAGGNANATATCGTCCGCATTTGTGCGTTGGTCGTGAACGGTGGAATAATGGCGGATGAAAACGAAAACTCGTGCGATAAGTTCGACGACGTGAAGCCGGATAAGATGTTTACGCTGAAGAAGTGGAATGCGGNCGCGATGTGGAGCTGGGACGTGGAGTGCGATACGTGCGCTATCTGNCGTGTGCAAGTCATGGACGCTTGGCTANGCTGCCCAGGCGGAGAGCAAAAAGGACCACGCTCGGCGCCAGGANTGTGTCGTCGTGTGGGGCGAATGCACCATTCCTTTCACCACTGGTTGCATGTCGCTGTGGATTAAGGCAGAACAATCTGGGTGCCCGNTGTGCCAGCAAGAGTGGTCCATCCAGGGCATGGGCAAGTGAGCGCTGGGCAACCAATCAACAACATCCAACAATTCATGGACGCAAACGTGTTCTACTATTACGCATTTCGGAGAAAAACATTCATAGGAGATTCTAACAGTTGGAACAGGAGACGCAAAGAAACCGTCATACGAATCTCGTTGGTTGCCCTGTTGTTGTCTAGGATTTTTC]

[+] EMBL AL696894             [AGATCGGCCCGAGGNANATATCGTCCGCATTTGTGCGTTGGTCGTGAACGGTGGAATAATGGCGGATGAAAACGAAAACTCGTGCGATAAGTTCGACGACGTGAAGCCGGATAAGATGTTTACGCTGAAGAAGTGGAATGCGGNCGCGATGTGGAGCTGGGACGTGGAGTGCGATACGTGCGCTATCTGNCGTGTGCAAGTCATGGACGCTTGGCTANGCTGCCCAGGCGGAGAGCAAAAAGGACCACGCTCGGCGCCAGGANTGTGTCGTCGTGTGGGGCGAATGCACCATTCCTTTCACCACTGGTTGCATGTCGCTGTGGATTAAGGCAGAACAATCTGGGTGCCCGNTGTGCCAGCAAGAGTGGTCCATCCAGGGCATGGGCAAGTGAGCGCTGGGCAACCAATCAACAACATCCAACAATTCATGGACGCAAACGTGTTCTACTATTACGCATTTCGGAGAAAAACATTCATAGGAGATTCTAACAGTTGGAACAGGAGACGCAAAGAAACCGTCATACGAATCTCGTTGGTTGCCCTGTTGTTGTCTAGGATTTTTC]




>consensus_2267#1
AGATCGGCCCGAGGNANATATCGTCCGCATTTGTGCGTTGGTCGTGAACGGTGGAATAAT
GGCGGATGAAAACGAAAACTCGTGCGATAAGTTCGACGACGTGAAGCCGGATAAGATGTT
TACGCTGAAGAAGTGGAATGCGGNCGCGATGTGGAGCTGGGACGTGGAGTGCGATACGTG
CGCTATCTGNCGTGTGCAAGTCATGGACGCTTGGCTANGCTGCCCAGGCGGAGAGCAAAA
AGGACCACGCTCGGCGCCAGGANTGTGTCGTCGTGTGGGGCGAATGCACCATTCCTTTCA
CCACTGGTTGCATGTCGCTGTGGATTAAGGCAGAACAATCTGGGTGCCCGNTGTGCCAGC
AAGAGTGGTCCATCCAGGGCATGGGCAAGTGAGCGCTGGGCAACCAATCAACAACATCCA
ACAATTCATGGACGCAAACGTGTTCTACTATTACGCATTTCGGAGAAAAACATTCATAGG
AGATTCTAACAGTTGGAACAGGAGACGCAAAGAAACCGTCATACGAATCTCGTTGGTTGC
CCTGTTGTTGTCTAGGATTTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2267#0      ------CCGCGGAAAGAATATCGTCCGCAATTTGTGCGTTGGTCGTGAACGGTGGAATAA 54
consensus_2267#1      AGATCGGCCCGAGGNANATATCGTCCGCA-TTTGTGCGTTGGTCGTGAACGGTGGAATAA 59
                             * **      ************ ******************************

consensus_2267#0      TGGCGGATGAAAACGAAAACTCGTGCGATAAGTTCGACGACGTGAAGCCGGATAAGATGT 114
consensus_2267#1      TGGCGGATGAAAACGAAAACTCGTGCGATAAGTTCGACGACGTGAAGCCGGATAAGATGT 119
                      ************************************************************

consensus_2267#0      TTACGCTGAAGAAGTGGAATGCGGTCGCGATGTGGAGCTGGGACGTGGAGTGCGATACGT 174
consensus_2267#1      TTACGCTGAAGAAGTGGAATGCGGNCGCGATGTGGAGCTGGGACGTGGAGTGCGATACGT 179
                      ************************ ***********************************

consensus_2267#0      GCGCTATCTGCCGTGTGCAAGTCATGGACGCTTGCCTACGCTGCC-AGGCGGAGAGCAAA 233
consensus_2267#1      GCGCTATCTGNCGTGTGCAAGTCATGGACGCTTGGCTANGCTGCCCAGGCGGAGAGCAAA 239
                      ********** *********************** *** ****** **************

consensus_2267#0      AAGGAC-ACGCTCGGCCGCCAGGACTGTGTCGTCGTGTGGGGCGAATGCAACCATTCCTT 292
consensus_2267#1      AAGGACCACGCTCGGC-GCCAGGANTGTGTCGTCGTGTGGGGCGAATGCA-CCATTCCTT 297
                      ****** ********* ******* ************************* *********

consensus_2267#0      TCACCACTG-CTGCATGTCGCTGTGGATTAAG-CAGAACAATC--GGTGCCCGCTGTGCC 348
consensus_2267#1      TCACCACTGGTTGCATGTCGCTGTGGATTAAGGCAGAACAATCTGGGTGCCCGNTGTGCC 357
                      *********  ********************* **********  ******** ******

consensus_2267#0      AGCAAGAGTGGTCCATCCAGCGCATGGGCAAGTGAGCGCTGGGCCAACCAATCAACCAAC 408
consensus_2267#1      AGCAAGAGTGGTCCATCCAGGGCATGGGCAAGTGAGCGCTGGGC-AACCAATCAACAA-- 414
                      ******************** *********************** *********** *  

consensus_2267#0      CATCCAACCAATTCATGGACGCAAACGTGTTCTACTATTACGCATTTCGGAGAAAAACAT 468
consensus_2267#1      CATCCAAC-AATTCATGGACGCAAACGTGTTCTACTATTACGCATTTCGGAGAAAAACAT 473
                      ******** ***************************************************

consensus_2267#0      TCATAGGAGATTTAAA--GTGGAAAGGAGAGA----AAGAAAC-GTCATACGAATCTCGT 521
consensus_2267#1      TCATAGGAGATTCTAACAGTTGGAACAGGAGACGCAAAGAAACCGTCATACGAATCTCGT 533
                      ************  **  ** * **   ****    ******* ****************

consensus_2267#0      TGGTTGCA-TGTTGTTGTCTAGATTTTTCTTTTTTTAAATAAATAGGTGACATCGCG 577
consensus_2267#1      TGGTTGCCCTGTTGTTGTCTAGGATTTTTC--------------------------- 563
                      *******  *************  ****