These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [GCCGCCGCTAAACGTCATCAACCTTTGCGTCACTTGCGGACTGTTGGGCGGCCCAGCGTCCGTCGGCACGTGATTGCGGTATGACCCACACCGGACTAAGGAGGAAATTGAGTTGCTGCTGTCCAAACAAGAACCTAAACGTTCTTCCTCATTTCCTCATTTGCGGAGAGCGCAAACTGTTCTACACGCTTCTTTCACACATCGACAGGTCGATGTAGCTTTTAGAAAGATTAATTTATGACACTTTTAGGCAACGATTAGTTACTGCTTCTAGGAATGATAGTTAGTGATGATCATACATTACGTTTATATTTGTAATAATTTTCCTCAAATCATGTTTCCTCCATCACAACATTGAACTGGAACCTTAGGGTGGCCCTTTCTGTTAGAATGTTTAGGATATTTCTCATTTAATATTTATTAAACGCGAGCGCAAGCCATAAAACCCAGTCGACAGCTGGAACTTACTCTCGAATTCCTTCACATACGTAAAGAATCAAGTGATGGCTCGAAATAAGTGCAAGAATTGTGCTGTATTGCTTCATAAGATTACAAAGAAATGTAAAATCGCACACAAAACACTCGACACCCCTATCCCTCTATCGTGTAACCGTGTTCGTCATGATGCCCAGGCGAGCACCCCTGTCTGACACCGCGCTGCCATTCGTAGTGT] [+] EMBL BX612053 [GCCGCCGCTAAACGTCATCAACCTTTGCGTCACTTGCGGACTGTTGGGCGGCCCAGCGTCCGTCGGCACGTGATTGCGGTATGACCCACACCGGACTAAGGAGGAAATTGAGTTGCTGCTGTCCAAACAAGAACCTAAACGTTCTTCCTCATTTCCTCATTTGCGGAGAGCGCAAACTGTTCTACACGCTTCTTTCACACATCGACAGGTCGATGTAGCTTTTAGAAAGATTAATTTATGACACTTTTAGGCAACGATTAGTTACTGCTTCTAGGAATGATAGTTAGTGATGATCATACATTACGTTTATATTTGTAATAATTTTCCTCAAATCATGTTTCCTCCATCACAACATTGAACTGGAACCTTAGGGTGGCCCTTTCTGTTAGAATGTTTAGGATATTTCTCATTTAATATTTATTAAACGCGAGCGCAAGCCATAAAACCCAGTCGACAGCTGGAACTTACTCTCGAATTCCTTCACATACGTAAAGAATCAAGTGATGGCTCGAAATAAGTGCAAGAATTGTGCTGTATTGCTTCATAAGATTACAAAGAAATGTAAAATCGCACACAAAACACTCGACACCCCTATCCCTCTATCGTGTAACCGTGTTCGTCATGATGCCCAGGCGAGCACCCCTGTCTGACACCGCGCTGCCATTCGTAGTGT] consensusID : consensus_227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [CCGCCGGCAGGTGGCTCACACTGTCTTTCTCACGGCTGGAAGCGAAAGCAATGTGGCTAGAGACGTGTGCCGCAGGTGTTTGAATCGAAATCGTAGCAATCCGTGACAGCTGTGACCGGTAGAACTGTAGTCACTCGTCTCGGGCTGTACTATGTATAACTGTACTACACTACTTACACTAACCGTAGGATGGGCGTAGACGCCTTTCCGAATCGTACCAAAGAGCACTAAACTAACTAGCTTTAGTATAGCAACTAGCGAAACGATCTTCAAGCTTTCGATGGCAAACCGTAGCAGCAGCAGCAGCAATTAGAAAATCAAAACAAAAAGAAGACAGAGCAAAGAAAGTATATTATATTCGAAAGTGTTATACGAACGTTATACTTACCTGTGAAATTGTCCTATCGTTAAATCTGTCTGTTAGTCCTAACATGTGTGTGTGTAGCGGCTACCCACCAGCGGAATCGTACGTGGTAACGGAAAAACTCATCAGCCCCAAACCCCAGTTCAGATTACACTGGGCATTTGTTTTATTTTGTTCCGCCAGCGTATGTTCCGACGCGTGTCACTAAACAAGCAAACAATTACACTGCACTTAGCTAGCTAGAGCCGCCGCTAAACGTCATCAACCGTTGCGTCA] [+] EMBL BM627249 [CCGCCGGCAGGTGGCTCACACTGTCTTTCTCACGGCTGGAAGCGAAAGCAATGTGGCTAGAGACGTGTGCCGCAGGTGTTTGAATCGAAATCGTAGCAATCCGTGACAGCTGTGACCGGTAGAACTGTAGTCACTCGTCTCGGGCTGTACTATGTATAACTGTACTACACTACTTACACTAACCGTAGGATGGGCGTAGACGCCTTTCCGAATCGTACCAAAGAGCACTAAACTAACTAGCTTTAGTATAGCAACTAGCGAAACGATCTTCAAGCTTTCGATGGCAAACCGTAGCAGCAGCAGCAGCAATTAGAAAATCAAAACAAAAAGAAGACAGAGCAAAGAAAGTATATTATATTCGAAAGTGTTATACGAACGTTATACTTACCTGTGAAATTGTCCTATCGTTAAATCTGTCTGTTAGTCCTAACATGTGTGTGTGTAGCGGCTACCCACCAGCGGAATCGTACGTGGTAACGGAAAAACTCATCAGCCCCAAACCCCAGTTCAGATTACACTGGGCATTTGTTTTATTTTGTTCCGCCAGCGTATGTTCCGACGCGTGTCACTAAACAAGCAAACAATTACACTGCACTTAGCTAGCTAGAGCCGCCGCTAAACGTCATCAACCGTTGCGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_227#0 GCCGCCGCTAAACGTCATCAACCTTTGCGTCACTTGCGGACTGTTGGGCGGCCCAGCGTC 60 consensus_227#1 -CCGCCGGCAGGTGGC-TCA--CACTGTCTTTCTCACGG-CTGGAAGCGAAAGCAATGTG 55 ****** * * * *** * ** * ** *** *** * ** ** consensus_227#0 CGTCGGCACGTGATTGCGGTATG-ACCCACACCGGACTAAGGAGGAAATTGAGTTGCTGC 119 consensus_227#1 GCTAGAGACGTG--TGCCGCAGGTGTTTGAATCGAAAT--CGTAGCAATCC-GTGACAGC 110 * * ***** *** * * * * ** * * * * *** ** * ** consensus_227#0 TGTCCAAACAAGAACCTAAACGTTCTTCCTCATTTCCTCATTTGCGGAGAGCGCAAACTG 179 consensus_227#1 TGTGACCGGTAGAACT-----GTAGTCACTCGTCTCGGGCTGTACTATGTAT---AACTG 162 *** ***** ** * *** * ** * * * * ***** consensus_227#0 TTCTACACGCTTCTTTCACACATCGACAGGTCGATGTAG---CTTTTAGAAAGATTAATT 236 consensus_227#1 TACTACAC--TACTTACACTAACCGTAGGATGGGCGTAGACGCCTTTCCGAATCGTACCA 220 * ****** * *** *** * ** * * * **** * *** ** ** consensus_227#0 TATGACACTT--TTAGGCAACGATTAGTTACTGCTTCTAGGAATGATAGTTAG--TGATG 292 consensus_227#1 AAGAGCACTAAACTAACTAGCTTTAGTATAGCAACTAGCGAAACGATCTTCAAGCTTTCG 280 * **** ** * * * ** * * ** *** * * * * consensus_227#0 ATCATACATTACGTTTATATTTGTAATAATTTTCCTCAAATCATGTTTCCTCCATCACAA 352 consensus_227#1 ATGGCAAACCGTAGCAGCAGCAGCAGCAATTAGA---AAATCAAAACAAAAAGAAGACAG 337 ** * * * * * **** ****** * *** consensus_227#0 CATTGAACTGGAACCTTAGGGTGGCCCTTTCTGTTAGAATGTTTAGGATATTTCTCATTT 412 consensus_227#1 AGCAAAGAAAGTATATTATATTCGAAAGTGTTATACGAACGTTATACTTACCTGTGAAAT 397 * * * *** * * * * * *** *** ** * * * * consensus_227#0 AATATT--TATTAAACGCGAGCGCAAGCCATAAAACCCA-GTCGACAGCTGGAACTTACT 469 consensus_227#1 TGTCCTATCGTTAAATCTGTCTGTTAGTCCTAACATGTGTGTGTGTAGCGGCTACCCACC 457 * * ***** * * ** * *** * ** *** * ** ** consensus_227#0 CTCGAATTCCTTCACATACGTAAAGAATCAAGTGAT-GGCTCGAAATAAGTGCAAGAATT 528 consensus_227#1 AGCGGAATCGTACGTG---GTAACGGAAAAACTCATCAGCCCCAAACCCCAGTTCAGATT 514 ** * ** * * **** * * ** * ** ** * *** * *** consensus_227#0 GTGCTGTA---TTGCTTCATAAGATTACAAAGAAATGTAAAATCGCACACAAAACACTCG 585 consensus_227#1 ACACTGGGCATTTGTTTTATTTTGTTCCGCC--AGCGTATGTTCCGACGCGTGTCACTAA 572 *** *** ** ** ** * * *** ** ** * **** consensus_227#0 ACACCCCTATCCCTCTATCGTGTAACCGTGTTCGTCATGATGCCCAGGCGAGCACCCCTG 645 consensus_227#1 ACAAGCAAACAATTACACTGC---ACTTAGCTAGCTA-GAGCCGCCGCTAAACGTCATCA 628 *** * * * * * ** * * * * ** * * * * * * consensus_227#0 TCTGACACCGCGCTGCCATTCGTAGTGT 673 consensus_227#1 ACCGTTGCGTCA---------------- 640 * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||