cluster # 2271

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Anopheles gambiae
cluster # 2271 cluster # 2271 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2271#0 length = 687 sequences # 1

consensus_2271#1 length = 251 sequences # 1

consensusID : consensus_2271#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [CCGGATTCCACTACCGCTGATGGAGCGGGATGAGCTGCTGCAACCGCTCACAGAGCGTGCCGTAACGGAGCAGCGACAGCGCACCACGGTTGAGAAGGGTCTCCGCCCCATGAAGGACATTGCCGACGCGCTGTTGCTCGAGCTCGAAGGAGACGACAGCGAACCTTCGGACCGAACCGCTTTGCTGAGCTATTCCGAGAAGGAACCACTGATGGGTGACTTCCTTCAGGAGAAGCCAAAGAGCTCCGCCAAAGAGTTCCTACGCATCACCTTCCGGATACCAGCCACCCTCGCGGTGCTCTGCGTGACGAATCTGTTCTGCTGGATGAGCCACATCAGCTACTCGCTGTACTTTACCGACTTTGTGGGCGAGAAGGTGTTCGGTGGCGATCCGATGGCCCACTCCGATTCGGACGAGTACGCGCTCTACATCGAAGGCGTCCGGTACGGGTGCTTCGGGATGGCCATCTACTCGATCGCCTGCTCGACGTACTCGTGCACGATCGAGCGGCTGATCCGGGTGTTCCGGGCGCGCAACGTGTACAGCGGAGGGCTGCTGATCGACTTCGTCGGCATGCTGCTGATGGCCATGTTCCCGAGCAAGGTGACGGTGTACGTGTTCAGCGTGACGGGCGGTATAGTCGGAGCGCTGCTCTTCACCATGCCGTACATCATACTGGCGAAGTA]

[+] EMBL BM634569             [CCGGATTCCACTACCGCTGATGGAGCGGGATGAGCTGCTGCAACCGCTCACAGAGCGTGCCGTAACGGAGCAGCGACAGCGCACCACGGTTGAGAAGGGTCTCCGCCCCATGAAGGACATTGCCGACGCGCTGTTGCTCGAGCTCGAAGGAGACGACAGCGAACCTTCGGACCGAACCGCTTTGCTGAGCTATTCCGAGAAGGAACCACTGATGGGTGACTTCCTTCAGGAGAAGCCAAAGAGCTCCGCCAAAGAGTTCCTACGCATCACCTTCCGGATACCAGCCACCCTCGCGGTGCTCTGCGTGACGAATCTGTTCTGCTGGATGAGCCACATCAGCTACTCGCTGTACTTTACCGACTTTGTGGGCGAGAAGGTGTTCGGTGGCGATCCGATGGCCCACTCCGATTCGGACGAGTACGCGCTCTACATCGAAGGCGTCCGGTACGGGTGCTTCGGGATGGCCATCTACTCGATCGCCTGCTCGACGTACTCGTGCACGATCGAGCGGCTGATCCGGGTGTTCCGGGCGCGCAACGTGTACAGCGGAGGGCTGCTGATCGACTTCGTCGGCATGCTGCTGATGGCCATGTTCCCGAGCAAGGTGACGGTGTACGTGTTCAGCGTGACGGGCGGTATAGTCGGAGCGCTGCTCTTCACCATGCCGTACATCATACTGGCGAAGTA]




>consensus_2271#0
CCGGATTCCACTACCGCTGATGGAGCGGGATGAGCTGCTGCAACCGCTCACAGAGCGTGC
CGTAACGGAGCAGCGACAGCGCACCACGGTTGAGAAGGGTCTCCGCCCCATGAAGGACAT
TGCCGACGCGCTGTTGCTCGAGCTCGAAGGAGACGACAGCGAACCTTCGGACCGAACCGC
TTTGCTGAGCTATTCCGAGAAGGAACCACTGATGGGTGACTTCCTTCAGGAGAAGCCAAA
GAGCTCCGCCAAAGAGTTCCTACGCATCACCTTCCGGATACCAGCCACCCTCGCGGTGCT
CTGCGTGACGAATCTGTTCTGCTGGATGAGCCACATCAGCTACTCGCTGTACTTTACCGA
CTTTGTGGGCGAGAAGGTGTTCGGTGGCGATCCGATGGCCCACTCCGATTCGGACGAGTA
CGCGCTCTACATCGAAGGCGTCCGGTACGGGTGCTTCGGGATGGCCATCTACTCGATCGC
CTGCTCGACGTACTCGTGCACGATCGAGCGGCTGATCCGGGTGTTCCGGGCGCGCAACGT
GTACAGCGGAGGGCTGCTGATCGACTTCGTCGGCATGCTGCTGATGGCCATGTTCCCGAG
CAAGGTGACGGTGTACGTGTTCAGCGTGACGGGCGGTATAGTCGGAGCGCTGCTCTTCAC
CATGCCGTACATCATACTGGCGAAGTA

consensusID : consensus_2271#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [GAATGNCNGAGGNTNANAGCGCACACGGGTTGAGAAGGGTTCGCCATGAAGGACATTGCGACGCGCTGTTGTCGAGCTCGAAGGAGAGACAGCGAACTTCGGACGAACGTTTGTGAGCTATTCCGAGAAGGAACACTGATGGGTGACTTCTTCAGGAGAAGCAAGAGCTCGCAAAGAGTTCTAGCATACTTCGGATACAGCACCCTCGCGGTGCTCTGCGTGACGAATCTGTCTGGTGGATGAGCAATATA]

[+] EMBL AL696920             [GAATGNCNGAGGNTNANAGCGCACACGGGTTGAGAAGGGTTCGCCATGAAGGACATTGCGACGCGCTGTTGTCGAGCTCGAAGGAGAGACAGCGAACTTCGGACGAACGTTTGTGAGCTATTCCGAGAAGGAACACTGATGGGTGACTTCTTCAGGAGAAGCAAGAGCTCGCAAAGAGTTCTAGCATACTTCGGATACAGCACCCTCGCGGTGCTCTGCGTGACGAATCTGTCTGGTGGATGAGCAATATA]




>consensus_2271#1
GAATGNCNGAGGNTNANAGCGCACACGGGTTGAGAAGGGTTCGCCATGAAGGACATTGCG
ACGCGCTGTTGTCGAGCTCGAAGGAGAGACAGCGAACTTCGGACGAACGTTTGTGAGCTA
TTCCGAGAAGGAACACTGATGGGTGACTTCTTCAGGAGAAGCAAGAGCTCGCAAAGAGTT
CTAGCATACTTCGGATACAGCACCCTCGCGGTGCTCTGCGTGACGAATCTGTCTGGTGGA
TGAGCAATATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2271#0      CCGGATTCCACTACCGCTGATGGAGCGGGATGAGCTGCTGCAACCGCTCACAGAGCGTGC 60
consensus_2271#1      -----------------------------------------------------------G 1
                                                                                  

consensus_2271#0      CGTAACGGAGCAGCGACAGCGCACCACGGTTGAGAAGGGTCTCCGCCCCATGAAGGACAT 120
consensus_2271#1      AATGNCNGAG-GNTNANAGCGCACACGGGTTGAGAAGGGTT----CGCCATGAAGGACAT 56
                        *  * ***     * *******   *************     * *************

consensus_2271#0      TGCCGACGCGCTGTTGCTCGAGCTCGAAGGAGACGACAGCGAACCTTCGGACCGAACCGC 180
consensus_2271#1      TGC-GACGCGCTGTTG-TCGAGCTCGAAGGAGA-GACAGCGAAC-TTCGGAC-GAACG-- 109
                      *** ************ **************** ********** ******* ****   

consensus_2271#0      TTTGCTGAGCTATTCCGAGAAGGAACCACTGATGGGTGACTTCCTTCAGGAGAAGCCAAA 240
consensus_2271#1      TTTG-TGAGCTATTCCGAGAAGGAAC-ACTGATGGGTGACTTC-TTCAGGAGAAGC--AA 164
                      **** ********************* **************** ************  **

consensus_2271#0      GAGCTCCGCCAAAGAGTTCCTACGCATCACCTTCCGGATACCAGCCACCCTCGCGGTGCT 300
consensus_2271#1      GAGCTC--GCAAAGAGTTCTAGCATAC-----TTCGGATACAG--CACCCTCGCGGTGCT 215
                      ******   **********   *  *      * *******    ***************

consensus_2271#0      CTGCGTGACGAATCTGTTCTGCTGGATGAGCCACATCAGCTACTCGCTGTACTTTACCGA 360
consensus_2271#1      CTGCGTGACGAATCTGT-CTGGTGGATGAGCAATATA----------------------- 251
                      ***************** *** ********* * **                        

consensus_2271#0      CTTTGTGGGCGAGAAGGTGTTCGGTGGCGATCCGATGGCCCACTCCGATTCGGACGAGTA 420
consensus_2271#1      ------------------------------------------------------------
                                                                                  

consensus_2271#0      CGCGCTCTACATCGAAGGCGTCCGGTACGGGTGCTTCGGGATGGCCATCTACTCGATCGC 480
consensus_2271#1      ------------------------------------------------------------
                                                                                  

consensus_2271#0      CTGCTCGACGTACTCGTGCACGATCGAGCGGCTGATCCGGGTGTTCCGGGCGCGCAACGT 540
consensus_2271#1      ------------------------------------------------------------
                                                                                  

consensus_2271#0      GTACAGCGGAGGGCTGCTGATCGACTTCGTCGGCATGCTGCTGATGGCCATGTTCCCGAG 600
consensus_2271#1      ------------------------------------------------------------
                                                                                  

consensus_2271#0      CAAGGTGACGGTGTACGTGTTCAGCGTGACGGGCGGTATAGTCGGAGCGCTGCTCTTCAC 660
consensus_2271#1      ------------------------------------------------------------
                                                                                  

consensus_2271#0      CATGCCGTACATCATACTGGCGAAGTA 687
consensus_2271#1      ---------------------------