cluster # 2275

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Anopheles gambiae
cluster # 2275 cluster # 2275 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2275#0 length = 681 sequences # 1

consensus_2275#1 length = 507 sequences # 1

consensusID : consensus_2275#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence

                              [CCGAGGGACACTAGCGAGCACGGACAGTGTACCCCGGCCTTAAGGGAGTCGCCTGCCCCATGGGGACCATCATATCCATACACCGGTCTTTGGGTGTAAAGTGTGTAAAGTTATACAAAATCTACGAGAAGATGAATGAGATGAGTGAATGAAAAGCGAATGTGTTGAATGTGTGTGTGTGAGAGAGAGCATGAGAGTTGAGAGCAGTTCAGCTACCGATAAAAAAGTGAAATGATCCCAAAATTGAACAGTTACCAAGTATTTGTTGTTCATTAGAGTTAGAGAGTTGTTAATTTGCTAAAAAAATACTTCCTCCCCCCCTCCTTACCACACGCTCCGATGTATAGGCCATACAGAGCGCCACCGCCATACGATGTAAATGCGCAAGCGAATACCAGAGACAGGCGGGTTTTGCGCGTCGTCAAGCGCGCACCATGCGTGTCAGTTGTTTTTTAGCAGTTAGAACAAGAACGCGAACCCGAAATCGGAAGCAAGGACTGGGAAGGGTCTCGAGCTCGCGTCTAGGATGTAAGTTGTGGCAAACTAGTCTACGTCTCCCTTTCGTTGAGCGTACGTTTAGCTATTAGTGTAGTTACACGCCTGTAGCAGAGGGTCCTCGATGGCACGTGGGGGACAGAGGAACAGGACAAGGCAGGCACATAATGTCACAAGAATCACACA]

[+] EMBL BM636520             [CCGAGGGACACTAGCGAGCACGGACAGTGTACCCCGGCCTTAAGGGAGTCGCCTGCCCCATGGGGACCATCATATCCATACACCGGTCTTTGGGTGTAAAGTGTGTAAAGTTATACAAAATCTACGAGAAGATGAATGAGATGAGTGAATGAAAAGCGAATGTGTTGAATGTGTGTGTGTGAGAGAGAGCATGAGAGTTGAGAGCAGTTCAGCTACCGATAAAAAAGTGAAATGATCCCAAAATTGAACAGTTACCAAGTATTTGTTGTTCATTAGAGTTAGAGAGTTGTTAATTTGCTAAAAAAATACTTCCTCCCCCCCTCCTTACCACACGCTCCGATGTATAGGCCATACAGAGCGCCACCGCCATACGATGTAAATGCGCAAGCGAATACCAGAGACAGGCGGGTTTTGCGCGTCGTCAAGCGCGCACCATGCGTGTCAGTTGTTTTTTAGCAGTTAGAACAAGAACGCGAACCCGAAATCGGAAGCAAGGACTGGGAAGGGTCTCGAGCTCGCGTCTAGGATGTAAGTTGTGGCAAACTAGTCTACGTCTCCCTTTCGTTGAGCGTACGTTTAGCTATTAGTGTAGTTACACGCCTGTAGCAGAGGGTCCTCGATGGCACGTGGGGGACAGAGGAACAGGACAAGGCAGGCACATAATGTCACAAGAATCACACA]




>consensus_2275#0
CCGAGGGACACTAGCGAGCACGGACAGTGTACCCCGGCCTTAAGGGAGTCGCCTGCCCCA
TGGGGACCATCATATCCATACACCGGTCTTTGGGTGTAAAGTGTGTAAAGTTATACAAAA
TCTACGAGAAGATGAATGAGATGAGTGAATGAAAAGCGAATGTGTTGAATGTGTGTGTGT
GAGAGAGAGCATGAGAGTTGAGAGCAGTTCAGCTACCGATAAAAAAGTGAAATGATCCCA
AAATTGAACAGTTACCAAGTATTTGTTGTTCATTAGAGTTAGAGAGTTGTTAATTTGCTA
AAAAAATACTTCCTCCCCCCCTCCTTACCACACGCTCCGATGTATAGGCCATACAGAGCG
CCACCGCCATACGATGTAAATGCGCAAGCGAATACCAGAGACAGGCGGGTTTTGCGCGTC
GTCAAGCGCGCACCATGCGTGTCAGTTGTTTTTTAGCAGTTAGAACAAGAACGCGAACCC
GAAATCGGAAGCAAGGACTGGGAAGGGTCTCGAGCTCGCGTCTAGGATGTAAGTTGTGGC
AAACTAGTCTACGTCTCCCTTTCGTTGAGCGTACGTTTAGCTATTAGTGTAGTTACACGC
CTGTAGCAGAGGGTCCTCGATGGCACGTGGGGGACAGAGGAACAGGACAAGGCAGGCACA
TAATGTCACAAGAATCACACA

consensusID : consensus_2275#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [ACACCGGCCTTTGGGTGTAATGTGTGTAAAGTTATACAAAATCTACGAGAAGATAAATGAGATGAGTGAATGAAAAGCGAATGTGTTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGCATAAGAGTTGAGAGCAGTTCAGCTACCGTTAAAAAAGTGAAATGATCCCAAAATTGAACAGTTACCAAGTATTTGTTGTTCATTAGAGTTAGAGAGTTGTTAATTTGCTAAAAATACTTCCTCCCCCCCTCCTCCCTCCTTACCACACGCTCCGATGTACAGGCCATACAGAGCGCCACCGCCATACGATGTAAATGCGCAAGCGAATACCAGAGACAGGCGAGGTTTTGCGCGTCTTCAAGCGCGCACCATGCGTGTCAGTTGTTTTTTAGCAGTTAGAACAAGAACGCGAACCCGAAATCGAAAGCAAGGACTGGGGAAGGGTCTCGAGCTCGCGTCTAGGATGTAAGTTGTGGCAAACTAGTC]

[+] EMBL BX602596             [ACACCGGCCTTTGGGTGTAATGTGTGTAAAGTTATACAAAATCTACGAGAAGATAAATGAGATGAGTGAATGAAAAGCGAATGTGTTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGCATAAGAGTTGAGAGCAGTTCAGCTACCGTTAAAAAAGTGAAATGATCCCAAAATTGAACAGTTACCAAGTATTTGTTGTTCATTAGAGTTAGAGAGTTGTTAATTTGCTAAAAATACTTCCTCCCCCCCTCCTCCCTCCTTACCACACGCTCCGATGTACAGGCCATACAGAGCGCCACCGCCATACGATGTAAATGCGCAAGCGAATACCAGAGACAGGCGAGGTTTTGCGCGTCTTCAAGCGCGCACCATGCGTGTCAGTTGTTTTTTAGCAGTTAGAACAAGAACGCGAACCCGAAATCGAAAGCAAGGACTGGGGAAGGGTCTCGAGCTCGCGTCTAGGATGTAAGTTGTGGCAAACTAGTC]




>consensus_2275#1
ACACCGGCCTTTGGGTGTAATGTGTGTAAAGTTATACAAAATCTACGAGAAGATAAATGA
GATGAGTGAATGAAAAGCGAATGTGTTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGAGAGAGAGAGCATAAGAGTTGAGAGCAGTTCAGCTACCGTTAAAAAAGTG
AAATGATCCCAAAATTGAACAGTTACCAAGTATTTGTTGTTCATTAGAGTTAGAGAGTTG
TTAATTTGCTAAAAATACTTCCTCCCCCCCTCCTCCCTCCTTACCACACGCTCCGATGTA
CAGGCCATACAGAGCGCCACCGCCATACGATGTAAATGCGCAAGCGAATACCAGAGACAG
GCGAGGTTTTGCGCGTCTTCAAGCGCGCACCATGCGTGTCAGTTGTTTTTTAGCAGTTAG
AACAAGAACGCGAACCCGAAATCGAAAGCAAGGACTGGGGAAGGGTCTCGAGCTCGCGTC
TAGGATGTAAGTTGTGGCAAACTAGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2275#0      CCGAGGGACACTAGCGAGCACGGACAGTGTACCCCGGCCTTAAGGGAGTCGCCTGCCCCA 60
consensus_2275#1      ------------------------------------------------------------
                                                                                  

consensus_2275#0      TGGGGACCATCATATCCATACACCGGTCTTTGGGTGTAAAGTGTGTAAAGTTATACAAAA 120
consensus_2275#1      -------------------ACACCGGCCTTTGGGTGTAATGTGTGTAAAGTTATACAAAA 41
                                         ******* ************ ********************

consensus_2275#0      TCTACGAGAAGATGAATGAGATGAGTGAATGAAAAGCGAATGTGTTGAATGTGTGTGTGT 180
consensus_2275#1      TCTACGAGAAGATAAATGAGATGAGTGAATGAAAAGCGAATGTGTTGAGTGTGTGTGTGT 101
                      ************* ********************************** ***********

consensus_2275#0      G------------------------------AGAGAGAGCATGAGAGTTGAGAGCAGTTC 210
consensus_2275#1      GTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGCATAAGAGTTGAGAGCAGTTC 161
                      *                              *********** *****************

consensus_2275#0      AGCTACCGATAAAAAAGTGAAATGATCCCAAAATTGAACAGTTACCAAGTATTTGTTGTT 270
consensus_2275#1      AGCTACCGTTAAAAAAGTGAAATGATCCCAAAATTGAACAGTTACCAAGTATTTGTTGTT 221
                      ******** ***************************************************

consensus_2275#0      CATTAGAGTTAGAGAGTTGTTAATTTGCTAAAAAAA-----TACTTCCTCCCCCCCTCCT 325
consensus_2275#1      CATTAGAGTTAGAGAGTTGTTAATTTGCTAAAAATACTTCCTCCCCCCCTCCTCCCTCCT 281
                      ********************************** *     * *  **  ** *******

consensus_2275#0      TACCACACGCTCCGATGTATAGGCCATACAGAGCGCCACCGCCATACGATGTAAATGCGC 385
consensus_2275#1      TACCACACGCTCCGATGTACAGGCCATACAGAGCGCCACCGCCATACGATGTAAATGCGC 341
                      ******************* ****************************************

consensus_2275#0      AAGCGAATACCAGAGACAGGCG-GGTTTTGCGCGTCGTCAAGCGCGCACCATGCGTGTCA 444
consensus_2275#1      AAGCGAATACCAGAGACAGGCGAGGTTTTGCGCGTCTTCAAGCGCGCACCATGCGTGTCA 401
                      ********************** ************* ***********************

consensus_2275#0      GTTGTTTTTTAGCAGTTAGAACAAGAACGCGAACCCGAAATCGGAAGCAAGGACTGGG-A 503
consensus_2275#1      GTTGTTTTTTAGCAGTTAGAACAAGAACGCGAACCCGAAATCGAAAGCAAGGACTGGGGA 461
                      ******************************************* ************** *

consensus_2275#0      AGGGTCTCGAGCTCGCGTCTAGGATGTAAGTTGTGGCAAACTAGTCTACGTCTCCCTTTC 563
consensus_2275#1      AGGGTCTCGAGCTCGCGTCTAGGATGTAAGTTGTGGCAAACTAGTC-------------- 507
                      **********************************************              

consensus_2275#0      GTTGAGCGTACGTTTAGCTATTAGTGTAGTTACACGCCTGTAGCAGAGGGTCCTCGATGG 623
consensus_2275#1      ------------------------------------------------------------
                                                                                  

consensus_2275#0      CACGTGGGGGACAGAGGAACAGGACAAGGCAGGCACATAATGTCACAAGAATCACACA 681
consensus_2275#1      ----------------------------------------------------------