cluster # 2301

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Anopheles gambiae
cluster # 2301 cluster # 2301 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2301#0 length = 519 sequences # 1

consensus_2301#1 length = 197 sequences # 1

consensusID : consensus_2301#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [GAATCAAACTCTAAGACCTATTGTTTATTTTTATTAAGTATGCAAAGATCTGGGACACTTGAGAACAAGACCAAGGAGTAATAGAAGTAATAGAAGATCGTCTTTTTGAAAAACAAATAACCGATCTTGCACCATGAACACATTGATGCTTTCTTTTTGCACGCTTGTGTGCATCAGCAAAGTTGTTTTGTGCAACTGTACAACACACCATAGTTATGAGTTTAAATAGTTTACGTTAGTTAGACTTTTTTCTGTGTACAAATGTGTTTCGTTCTGTATTGCTTTATCAAATTATAATTTCATCTATATGACGTTTCATAGCCCATTTTGTTGAAATGTGGTTCATTTTTACGATTAGTTGTTTTCCCACTTCTTTTGTTTGTTACCCATTTTACAACAATGGTTCATGGTGAAAAACGGCCACACAAAACTTACACCGTGAGAGAGGCATGAGAAGGAGGTAACATCAAAAGTAGAGCAGCTATGCAAGGATAAGCTGTATTATGTTTTAAATTCAAC]

[+] EMBL BX602968             [GAATCAAACTCTAAGACCTATTGTTTATTTTTATTAAGTATGCAAAGATCTGGGACACTTGAGAACAAGACCAAGGAGTAATAGAAGTAATAGAAGATCGTCTTTTTGAAAAACAAATAACCGATCTTGCACCATGAACACATTGATGCTTTCTTTTTGCACGCTTGTGTGCATCAGCAAAGTTGTTTTGTGCAACTGTACAACACACCATAGTTATGAGTTTAAATAGTTTACGTTAGTTAGACTTTTTTCTGTGTACAAATGTGTTTCGTTCTGTATTGCTTTATCAAATTATAATTTCATCTATATGACGTTTCATAGCCCATTTTGTTGAAATGTGGTTCATTTTTACGATTAGTTGTTTTCCCACTTCTTTTGTTTGTTACCCATTTTACAACAATGGTTCATGGTGAAAAACGGCCACACAAAACTTACACCGTGAGAGAGGCATGAGAAGGAGGTAACATCAAAAGTAGAGCAGCTATGCAAGGATAAGCTGTATTATGTTTTAAATTCAAC]




>consensus_2301#0
GAATCAAACTCTAAGACCTATTGTTTATTTTTATTAAGTATGCAAAGATCTGGGACACTT
GAGAACAAGACCAAGGAGTAATAGAAGTAATAGAAGATCGTCTTTTTGAAAAACAAATAA
CCGATCTTGCACCATGAACACATTGATGCTTTCTTTTTGCACGCTTGTGTGCATCAGCAA
AGTTGTTTTGTGCAACTGTACAACACACCATAGTTATGAGTTTAAATAGTTTACGTTAGT
TAGACTTTTTTCTGTGTACAAATGTGTTTCGTTCTGTATTGCTTTATCAAATTATAATTT
CATCTATATGACGTTTCATAGCCCATTTTGTTGAAATGTGGTTCATTTTTACGATTAGTT
GTTTTCCCACTTCTTTTGTTTGTTACCCATTTTACAACAATGGTTCATGGTGAAAAACGG
CCACACAAAACTTACACCGTGAGAGAGGCATGAGAAGGAGGTAACATCAAAAGTAGAGCA
GCTATGCAAGGATAAGCTGTATTATGTTTTAAATTCAAC

consensusID : consensus_2301#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 197
fasta sequence

                              [CGACCCACGCGTCCGCCCACGCGTCCGGTTTCTTGTTGTGGTTGTTGGTTTGTTTTTTTTTGTTTTCCCACTTCTTTTGTTTGTTACCCATTTTACAACAATGGTTCATGGTGAAAAACGGCCACACAAAACTTACACCGTGAGAGAGGCATGAGAAGGAGGTAACATCAAAAGTAGAGCAGCTATGCAAGGATAAG]

[+] EMBL BM582992             [CGACCCACGCGTCCGCCCACGCGTCCGGTTTCTTGTTGTGGTTGTTGGTTTGTTTTTTTTTGTTTTCCCACTTCTTTTGTTTGTTACCCATTTTACAACAATGGTTCATGGTGAAAAACGGCCACACAAAACTTACACCGTGAGAGAGGCATGAGAAGGAGGTAACATCAAAAGTAGAGCAGCTATGCAAGGATAAG]




>consensus_2301#1
CGACCCACGCGTCCGCCCACGCGTCCGGTTTCTTGTTGTGGTTGTTGGTTTGTTTTTTTT
TGTTTTCCCACTTCTTTTGTTTGTTACCCATTTTACAACAATGGTTCATGGTGAAAAACG
GCCACACAAAACTTACACCGTGAGAGAGGCATGAGAAGGAGGTAACATCAAAAGTAGAGC
AGCTATGCAAGGATAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2301#0      GAATCAAACTCTAAGACCTATTGTTTATTTTTATTAAGTATGCAAAGATCTGGGACACTT 60
consensus_2301#1      ------------------------------------------------------------
                                                                                  

consensus_2301#0      GAGAACAAGACCAAGGAGTAATAGAAGTAATAGAAGATCGTCTTTTTGAAAAACAAATAA 120
consensus_2301#1      ------------------------------------------------------------
                                                                                  

consensus_2301#0      CCGATCTTGCACCATGAACACATTGATGCTTTCTTTTTGCACGCTTGTGTGCATCAGCAA 180
consensus_2301#1      ------------------------------------------------------------
                                                                                  

consensus_2301#0      AGTTGTTTTGTGCAACTGTACAACACACCATAGTTATGAGTTTAAATAGTTTACGTTAGT 240
consensus_2301#1      ------------------------------------------------------------
                                                                                  

consensus_2301#0      TAGACTTTTTTCTGTGTACAAATGTGTTTCGTTCTGTATTGCTTTATCAAATTATAATTT 300
consensus_2301#1      -----------------------------------------------------------C 1
                                                                                  

consensus_2301#0      CATCTATATGACGTTTCATA-GCCCATTTTGTTGAAATGTGGTTCATT-TTTACGATTAG 358
consensus_2301#1      GACCCACGCGTCCGCCCACGCGTCCGGTTTCTTGT--TGTGGTTGTTGGTTTGTTTTTTT 59
                       * * *   * *    **   * **  *** ***   *******  *  ***    **  

consensus_2301#0      TTGTTTTCCCACTTCTTTTGTTTGTTACCCATTTTACAACAATGGTTCATGGTGAAAAAC 418
consensus_2301#1      TTGTTTTCCCACTTCTTTTGTTTGTTACCCATTTTACAACAATGGTTCATGGTGAAAAAC 119
                      ************************************************************

consensus_2301#0      GGCCACACAAAACTTACACCGTGAGAGAGGCATGAGAAGGAGGTAACATCAAAAGTAGAG 478
consensus_2301#1      GGCCACACAAAACTTACACCGTGAGAGAGGCATGAGAAGGAGGTAACATCAAAAGTAGAG 179
                      ************************************************************

consensus_2301#0      CAGCTATGCAAGGATAAGCTGTATTATGTTTTAAATTCAAC 519
consensus_2301#1      CAGCTATGCAAGGATAAG----------------------- 197
                      ******************