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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[GGCAGAATCGCCACGAGGTTGATCGTCGGAATCTGTGGCTCGNCATGTGCACTATCTAGTCAAGGGGACAGATCGGTGATTTTATCGTGAAAAAACCCATGGTCATAGGCCATGAAGCGTCCGGTGTGGTGTCCAAGGTGGGCTCGAAGGTGAAGCATCTGAATGTTGGTGATCGCGTTGCGATCGAACCTGGCTACGGTTGTCGCACGTGCGAATACTGCAAGGGCGGTTCGTACAACNCTCTGTGCGGAGATGATCTTCTGTGCCACCCCGCCGTACGATGGCAACCTTACCCGGTACTTTGCCCATCCGGCCGACTTTTGCTACAAACTGCCCGACCACGTGACCATGGAGGAGGGTGCCCTGCTGGAGCCGCTTNCGGTCGGTGTGCATGCGTGTACGGCGGGCAAACGTTGGGCTCGGTATCGCAGGTGCTAATTCTTGGGGCGGGACCGATCGGTCTGGTGACGTTGATAGTGGCCAAAGCCGATGGGTGCGGGCAAAGTGCTCGTTAACCGATCTGCTCCAGAACCGGCTGGACGTGGCGAAACGGAGCTGGGACGNCATGNNTGAAAACGCTAGCCATACCCGAAGGACCGCNGACGGAGGCTGAGACTGGTGAACGGATCATACACACGGAGGCGACNATGGNCACGAGAGCGA]
[+] EMBL BX467285 [GGCAGAATCGCCACGAGGTTGATCGTCGGAATCTGTGGCTCGNCATGTGCACTATCTAGTCAAGGGGACAGATCGGTGATTTTATCGTGAAAAAACCCATGGTCATAGGCCATGAAGCGTCCGGTGTGGTGTCCAAGGTGGGCTCGAAGGTGAAGCATCTGAATGTTGGTGATCGCGTTGCGATCGAACCTGGCTACGGTTGTCGCACGTGCGAATACTGCAAGGGCGGTTCGTACAACNCTCTGTGCGGAGATGATCTTCTGTGCCACCCCGCCGTACGATGGCAACCTTACCCGGTACTTTGCCCATCCGGCCGACTTTTGCTACAAACTGCCCGACCACGTGACCATGGAGGAGGGTGCCCTGCTGGAGCCGCTTNCGGTCGGTGTGCATGCGTGTACGGCGGGCAAACGTTGGGCTCGGTATCGCAGGTGCTAATTCTTGGGGCGGGACCGATCGGTCTGGTGACGTTGATAGTGGCCAAAGCCGATGGGTGCGGGCAAAGTGCTCGTTAACCGATCTGCTCCAGAACCGGCTGGACGTGGCGAAACGGAGCTGGGACGNCATGNNTGAAAACGCTAGCCATACCCGAAGGACCGCNGACGGAGGCTGAGACTGGTGAACGGATCATACACACGGAGGCGACNATGGNCACGAGAGCGA]
consensusID : consensus_231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGCGATGGCCAATAAGAGCGACAATCTGACAGCGGTGCTGTACGGCATTGAGGATCTGCGCCTGGAGCAGCGTCCCATTCCGGTGCCGAAAGATGACGAGGTGCTGCTGGAGATGGACGTCGTCGGAATCTGTGGCTCGGATGTGCACTATCTAGTCAAGGGACGGATCGGCGATTTTATCGTGAAAAAACCCATGGTCATAGGCCATGAAGCGTCCGGTGTGGTGTCCAAGGTGGGCTCGAAGGTAAAGCATCTGCAAGTCGGTGATCGCGTTGCGATCGAACCTGGCTACGGTTGTCGCACGTGCGAATACTGTAAGGGCGGTTCGTACAACCTCTGTGCGGAGATGATCTTCTGTGCCACCCCGCCGTACGATGGCAACCTTACCCGGTACTTTGCCCATCCGGCCGACTTTTGCTACAAACTGCCCGACCACGTGACCATGGAGGAGGGTGCCCTGCTGGAGCCGCTTTCGGTCGGTGTGCATGCGTGTCGGCGGGCAAACGTTGGGCTCGGTTCGCAGGTGCTAATTCTTGGGGCGGGACCGATCGGTCTGGTGACGTTGATAGTGGCCAA]
[+] EMBL BM628275 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGCGATGGCCAATAAGAGCGACAATCTGACAGCGGTGCTGTACGGCATTGAGGATCTGCGCCTGGAGCAGCGTCCCATTCCGGTGCCGAAAGATGACGAGGTGCTGCTGGAGATGGACGTCGTCGGAATCTGTGGCTCGGATGTGCACTATCTAGTCAAGGGACGGATCGGCGATTTTATCGTGAAAAAACCCATGGTCATAGGCCATGAAGCGTCCGGTGTGGTGTCCAAGGTGGGCTCGAAGGTAAAGCATCTGCAAGTCGGTGATCGCGTTGCGATCGAACCTGGCTACGGTTGTCGCACGTGCGAATACTGTAAGGGCGGTTCGTACAACCTCTGTGCGGAGATGATCTTCTGTGCCACCCCGCCGTACGATGGCAACCTTACCCGGTACTTTGCCCATCCGGCCGACTTTTGCTACAAACTGCCCGACCACGTGACCATGGAGGAGGGTGCCCTGCTGGAGCCGCTTTCGGTCGGTGTGCATGCGTGTCGGCGGGCAAACGTTGGGCTCGGTTCGCAGGTGCTAATTCTTGGGGCGGGACCGATCGGTCTGGTGACGTTGATAGTGGCCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_231#0 ------------------------------------------------------------
consensus_231#1 CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGCGATGGCCAATAAGAGCGACAATCTGAC 60
consensus_231#0 ------------------------------------------------------------
consensus_231#1 AGCGGTGCTGTACGGCATTGAGGATCTGCGCCTGGAGCAGCGTCCCATTCCGGTGCCGAA 120
consensus_231#0 ---GGCAGAATCGCCAC--GAGGTTGA--TCGTCGGAATCTGTGGCTCGNCATGTGCACT 53
consensus_231#1 AGATGACGAGGTGCTGCTGGAGATGGACGTCGTCGGAATCTGTGGCTCGG-ATGTGCACT 179
* ** ** * *** * ** ******************** *********
consensus_231#0 ATCTAGTCAAGGGGACAGATCGGTGATTTTATCGTGAAAAAACCCATGGTCATAGGCCAT 113
consensus_231#1 ATCTAGTCAAGGG-ACGGATCGGCGATTTTATCGTGAAAAAACCCATGGTCATAGGCCAT 238
************* ** ****** ************************************
consensus_231#0 GAAGCGTCCGGTGTGGTGTCCAAGGTGGGCTCGAAGGTGAAGCATCTGAATGTTGGTGAT 173
consensus_231#1 GAAGCGTCCGGTGTGGTGTCCAAGGTGGGCTCGAAGGTAAAGCATCTGCAAGTCGGTGAT 298
************************************** ********* * ** ******
consensus_231#0 CGCGTTGCGATCGAACCTGGCTACGGTTGTCGCACGTGCGAATACTGCAAGGGCGGTTCG 233
consensus_231#1 CGCGTTGCGATCGAACCTGGCTACGGTTGTCGCACGTGCGAATACTGTAAGGGCGGTTCG 358
*********************************************** ************
consensus_231#0 TACAACNCTCTGTGCGGAGATGATCTTCTGTGCCACCCCGCCGTACGATGGCAACCTTAC 293
consensus_231#1 TACAACC-TCTGTGCGGAGATGATCTTCTGTGCCACCCCGCCGTACGATGGCAACCTTAC 417
****** ****************************************************
consensus_231#0 CCGGTACTTTGCCCATCCGGCCGACTTTTGCTACAAACTGCCCGACCACGTGACCATGGA 353
consensus_231#1 CCGGTACTTTGCCCATCCGGCCGACTTTTGCTACAAACTGCCCGACCACGTGACCATGGA 477
************************************************************
consensus_231#0 GGAGGGTGCCCTGCTGGAGCCGCTTNCGGTCGGTGTGCATGCGTGTACGGCGGGCAAACG 413
consensus_231#1 GGAGGGTGCCCTGCTGGAGCCGCTTTCGGTCGGTGTGCATGCGTGT-CGGCGGGCAAACG 536
************************* ******************** *************
consensus_231#0 TTGGGCTCGGTATCGCAGGTGCTAATTCTTGGGGCGGGACCGATCGGTCTGGTGACGTTG 473
consensus_231#1 TTGGGCTCGGT-TCGCAGGTGCTAATTCTTGGGGCGGGACCGATCGGTCTGGTGACGTTG 595
*********** ************************************************
consensus_231#0 ATAGTGGCCAAAGCCGATGGGTGCGGGCAAAGTGCTCGTTAACCGATCTGCTCCAGAACC 533
consensus_231#1 ATAGTGGCCAA------------------------------------------------- 606
***********
consensus_231#0 GGCTGGACGTGGCGAAACGGAGCTGGGACGNCATGNNTGAAAACGCTAGCCATACCCGAA 593
consensus_231#1 ------------------------------------------------------------
consensus_231#0 GGACCGCNGACGGAGGCTGAGACTGGTGAACGGATCATACACACGGAGGCGACNATGGNC 653
consensus_231#1 ------------------------------------------------------------
consensus_231#0 ACGAGAGCGA 663
consensus_231#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||