cluster # 2323

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Anopheles gambiae
cluster # 2323 cluster # 2323 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2323#0 length = 614 sequences # 1

consensus_2323#1 length = 292 sequences # 1

consensusID : consensus_2323#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence

                              [CCGCCCACGCGTCCGAGAAAACGTATCTAATTATTCTGCAAGTTTACGAAAGCAAAAGGACCGTGTGAGGAATACAAAAATGGTGCAGACATCTTCAGGATTCGTTGGATTCTTCAAAAACATATATAACGATGAATACAAATGTCTATTATCATTTTTTACTTCACAGGGCTCTGGTTAAAAGTGCATCACTGTTCATCGTGGGTGTGCGGTTTGCACAGGAATGTGTTGGTTTGGAATTGATGCCATCGGTGGCTCATTGAATAGTGACAACCCCCTAATTAATGTAACAAACGAATAAATCCGCGTTTTAAAATGTATACATTCGCGTACTGTTCATTGGTTGTTGTCTGTTTTGGCTCGATAAGTGCCGATGTAAATAGCGATTCAGGATACAACTTCTTAGTTATAGTTACTGATGACCAAGACATCATGCTGAATGGGATGACCCCAATGGCCAAAACTCTTGAACACATCGCAAATGAAGGAATGACCTTTGTCAATGCATTTACAACATCTCCGATTTGTTGCCCATCACGAAGTTCAATTCTGACGGGAAAATATGCTCACAACCACCAAACAAAGAACAACTCTCGTTCCGGCGGCTGTTATGG]

[+] EMBL BM583020             [CCGCCCACGCGTCCGAGAAAACGTATCTAATTATTCTGCAAGTTTACGAAAGCAAAAGGACCGTGTGAGGAATACAAAAATGGTGCAGACATCTTCAGGATTCGTTGGATTCTTCAAAAACATATATAACGATGAATACAAATGTCTATTATCATTTTTTACTTCACAGGGCTCTGGTTAAAAGTGCATCACTGTTCATCGTGGGTGTGCGGTTTGCACAGGAATGTGTTGGTTTGGAATTGATGCCATCGGTGGCTCATTGAATAGTGACAACCCCCTAATTAATGTAACAAACGAATAAATCCGCGTTTTAAAATGTATACATTCGCGTACTGTTCATTGGTTGTTGTCTGTTTTGGCTCGATAAGTGCCGATGTAAATAGCGATTCAGGATACAACTTCTTAGTTATAGTTACTGATGACCAAGACATCATGCTGAATGGGATGACCCCAATGGCCAAAACTCTTGAACACATCGCAAATGAAGGAATGACCTTTGTCAATGCATTTACAACATCTCCGATTTGTTGCCCATCACGAAGTTCAATTCTGACGGGAAAATATGCTCACAACCACCAAACAAAGAACAACTCTCGTTCCGGCGGCTGTTATGG]




>consensus_2323#0
CCGCCCACGCGTCCGAGAAAACGTATCTAATTATTCTGCAAGTTTACGAAAGCAAAAGGA
CCGTGTGAGGAATACAAAAATGGTGCAGACATCTTCAGGATTCGTTGGATTCTTCAAAAA
CATATATAACGATGAATACAAATGTCTATTATCATTTTTTACTTCACAGGGCTCTGGTTA
AAAGTGCATCACTGTTCATCGTGGGTGTGCGGTTTGCACAGGAATGTGTTGGTTTGGAAT
TGATGCCATCGGTGGCTCATTGAATAGTGACAACCCCCTAATTAATGTAACAAACGAATA
AATCCGCGTTTTAAAATGTATACATTCGCGTACTGTTCATTGGTTGTTGTCTGTTTTGGC
TCGATAAGTGCCGATGTAAATAGCGATTCAGGATACAACTTCTTAGTTATAGTTACTGAT
GACCAAGACATCATGCTGAATGGGATGACCCCAATGGCCAAAACTCTTGAACACATCGCA
AATGAAGGAATGACCTTTGTCAATGCATTTACAACATCTCCGATTTGTTGCCCATCACGA
AGTTCAATTCTGACGGGAAAATATGCTCACAACCACCAAACAAAGAACAACTCTCGTTCC
GGCGGCTGTTATGG

consensusID : consensus_2323#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 292
fasta sequence

                              [CCGAATTTACAGAGAAAACGTATCTAATTATTCTGCAAGTTTACGAAAGCAAAAGGACCGTGTGAGGAATACAAAAATGGTGCAGACATCTTCAGGATTCGTTGGATTCTTCAAAAACATATATAACGATGAATACAAATGGGCTCTGGTTAAAAGTGCATCACTGTTCATCGTGGGTGTGCGGTTTGCACAGGAATGTGTTGGTTTGGAATTGATGCCATCGGTGGCTCATTGAATAGTGACAACCCCCTAATTAATGTAACAAACGAATAAATCCGCGTTTTAAAATGTG]

[+] EMBL BM653080             [CCGAATTTACAGAGAAAACGTATCTAATTATTCTGCAAGTTTACGAAAGCAAAAGGACCGTGTGAGGAATACAAAAATGGTGCAGACATCTTCAGGATTCGTTGGATTCTTCAAAAACATATATAACGATGAATACAAATGGGCTCTGGTTAAAAGTGCATCACTGTTCATCGTGGGTGTGCGGTTTGCACAGGAATGTGTTGGTTTGGAATTGATGCCATCGGTGGCTCATTGAATAGTGACAACCCCCTAATTAATGTAACAAACGAATAAATCCGCGTTTTAAAATGTG]




>consensus_2323#1
CCGAATTTACAGAGAAAACGTATCTAATTATTCTGCAAGTTTACGAAAGCAAAAGGACCG
TGTGAGGAATACAAAAATGGTGCAGACATCTTCAGGATTCGTTGGATTCTTCAAAAACAT
ATATAACGATGAATACAAATGGGCTCTGGTTAAAAGTGCATCACTGTTCATCGTGGGTGT
GCGGTTTGCACAGGAATGTGTTGGTTTGGAATTGATGCCATCGGTGGCTCATTGAATAGT
GACAACCCCCTAATTAATGTAACAAACGAATAAATCCGCGTTTTAAAATGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2323#0      CCGCCCACGCGTCCGAGAAAACGTATCTAATTATTCTGCAAGTTTACGAAAGCAAAAGGA 60
consensus_2323#1      ---CCGAATTTACAGAGAAAACGTATCTAATTATTCTGCAAGTTTACGAAAGCAAAAGGA 57
                         ** *     * **********************************************

consensus_2323#0      CCGTGTGAGGAATACAAAAATGGTGCAGACATCTTCAGGATTCGTTGGATTCTTCAAAAA 120
consensus_2323#1      CCGTGTGAGGAATACAAAAATGGTGCAGACATCTTCAGGATTCGTTGGATTCTTCAAAAA 117
                      ************************************************************

consensus_2323#0      CATATATAACGATGAATACAAATGTCTATTATCATTTTTTACTTCACAGGGCTCTGGTTA 180
consensus_2323#1      CATATATAACGATGAATACAAATG-------------------------GGCTCTGGTTA 152
                      ************************                         ***********

consensus_2323#0      AAAGTGCATCACTGTTCATCGTGGGTGTGCGGTTTGCACAGGAATGTGTTGGTTTGGAAT 240
consensus_2323#1      AAAGTGCATCACTGTTCATCGTGGGTGTGCGGTTTGCACAGGAATGTGTTGGTTTGGAAT 212
                      ************************************************************

consensus_2323#0      TGATGCCATCGGTGGCTCATTGAATAGTGACAACCCCCTAATTAATGTAACAAACGAATA 300
consensus_2323#1      TGATGCCATCGGTGGCTCATTGAATAGTGACAACCCCCTAATTAATGTAACAAACGAATA 272
                      ************************************************************

consensus_2323#0      AATCCGCGTTTTAAAATGTATACATTCGCGTACTGTTCATTGGTTGTTGTCTGTTTTGGC 360
consensus_2323#1      AATCCGCGTTTTAAAATGTG---------------------------------------- 292
                      *******************                                         

consensus_2323#0      TCGATAAGTGCCGATGTAAATAGCGATTCAGGATACAACTTCTTAGTTATAGTTACTGAT 420
consensus_2323#1      ------------------------------------------------------------
                                                                                  

consensus_2323#0      GACCAAGACATCATGCTGAATGGGATGACCCCAATGGCCAAAACTCTTGAACACATCGCA 480
consensus_2323#1      ------------------------------------------------------------
                                                                                  

consensus_2323#0      AATGAAGGAATGACCTTTGTCAATGCATTTACAACATCTCCGATTTGTTGCCCATCACGA 540
consensus_2323#1      ------------------------------------------------------------
                                                                                  

consensus_2323#0      AGTTCAATTCTGACGGGAAAATATGCTCACAACCACCAAACAAAGAACAACTCTCGTTCC 600
consensus_2323#1      ------------------------------------------------------------
                                                                                  

consensus_2323#0      GGCGGCTGTTATGG 614
consensus_2323#1      --------------