cluster # 2326

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Anopheles gambiae
cluster # 2326 cluster # 2326 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2326#0 length = 543 sequences # 1

consensus_2326#1 length = 396 sequences # 1

consensusID : consensus_2326#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [CCGCGCGCAAGTCTTGTTTTCCCTGTTTCTCCAAATAATCGAACGACGGCCGGAAATTCAATTCATAATTCCTTATCGTGACTCTCCCTTTCTGGCCAGACAGTCCAACACCCCGTCGAAGAGGAGATTGTGAAAGCGCTCCCGGCAGCGCCACCAGCAATGGTCCACAAGTGAAGCAAAGCGACGCAAACCTTCCGTTGGTGTTGGGTGTGCTGAACACGATGAACACCCTGCGGGAATGGTCCCCGCTGGTGGACCTGGTCAACAGGATCCCGTCCTCCGTCCAGCGCGGTCTGCTCTTTCACGACGTGTCCATCACGTGCGTCGACCTGGTGGAGGAGTTCATCGCCCTCGGCACGAACGTGGGGCTGGTGTTCTGGTACGACCGGAAGAGCGGTGCGATCGAGCGGCTTGCAACGGACAGCGGCTCGCAGGAGCTCACCTGCGTGCGGATCGCTTCGACCGTCGAGTTCATGGTGGCGGCCGGTTGCCGTGCCGGGCAGGTGAACATATTCCAGATCCCGAAAACGCCACCGCCACATC]

[+] EMBL BM652759             [CCGCGCGCAAGTCTTGTTTTCCCTGTTTCTCCAAATAATCGAACGACGGCCGGAAATTCAATTCATAATTCCTTATCGTGACTCTCCCTTTCTGGCCAGACAGTCCAACACCCCGTCGAAGAGGAGATTGTGAAAGCGCTCCCGGCAGCGCCACCAGCAATGGTCCACAAGTGAAGCAAAGCGACGCAAACCTTCCGTTGGTGTTGGGTGTGCTGAACACGATGAACACCCTGCGGGAATGGTCCCCGCTGGTGGACCTGGTCAACAGGATCCCGTCCTCCGTCCAGCGCGGTCTGCTCTTTCACGACGTGTCCATCACGTGCGTCGACCTGGTGGAGGAGTTCATCGCCCTCGGCACGAACGTGGGGCTGGTGTTCTGGTACGACCGGAAGAGCGGTGCGATCGAGCGGCTTGCAACGGACAGCGGCTCGCAGGAGCTCACCTGCGTGCGGATCGCTTCGACCGTCGAGTTCATGGTGGCGGCCGGTTGCCGTGCCGGGCAGGTGAACATATTCCAGATCCCGAAAACGCCACCGCCACATC]




>consensus_2326#0
CCGCGCGCAAGTCTTGTTTTCCCTGTTTCTCCAAATAATCGAACGACGGCCGGAAATTCA
ATTCATAATTCCTTATCGTGACTCTCCCTTTCTGGCCAGACAGTCCAACACCCCGTCGAA
GAGGAGATTGTGAAAGCGCTCCCGGCAGCGCCACCAGCAATGGTCCACAAGTGAAGCAAA
GCGACGCAAACCTTCCGTTGGTGTTGGGTGTGCTGAACACGATGAACACCCTGCGGGAAT
GGTCCCCGCTGGTGGACCTGGTCAACAGGATCCCGTCCTCCGTCCAGCGCGGTCTGCTCT
TTCACGACGTGTCCATCACGTGCGTCGACCTGGTGGAGGAGTTCATCGCCCTCGGCACGA
ACGTGGGGCTGGTGTTCTGGTACGACCGGAAGAGCGGTGCGATCGAGCGGCTTGCAACGG
ACAGCGGCTCGCAGGAGCTCACCTGCGTGCGGATCGCTTCGACCGTCGAGTTCATGGTGG
CGGCCGGTTGCCGTGCCGGGCAGGTGAACATATTCCAGATCCCGAAAACGCCACCGCCAC
ATC

consensusID : consensus_2326#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [ATAAACATCAAAACACCGAACAGTCCAACACCCCGTCGAAGAGGAGATTGTGAAAGCGCTCCCGGCAGCGCCACCAGCAATGGTCCACAAGTGAAGCAAAGCGACGCAAACCTTCCGTTGGTGTTGGGTGTGCTGAACACGATGAACACCCTGCGGGAATGGTCCCCGCTGGTGGACCTGGTCAACAGGATCCCGTCCTCCGTCCAGCGCGGTCTGCTCTTTCACGACGTGTCCATCACGTGCGTCGACCTGGTGGAGGAGTTCATCGCCCTCGGCACGAACGTGGGGCTGGTGTTCTGGTACGACCGGAAGAGCGGTGCGATCGAGCGGCTTGCAACGGACAGCGGCTCGCAGGAGCTCACCTGCGTGCGGATCGCTTCGACCGTCGAGTTCATG]

[+] EMBL BX620937             [ATAAACATCAAAACACCGAACAGTCCAACACCCCGTCGAAGAGGAGATTGTGAAAGCGCTCCCGGCAGCGCCACCAGCAATGGTCCACAAGTGAAGCAAAGCGACGCAAACCTTCCGTTGGTGTTGGGTGTGCTGAACACGATGAACACCCTGCGGGAATGGTCCCCGCTGGTGGACCTGGTCAACAGGATCCCGTCCTCCGTCCAGCGCGGTCTGCTCTTTCACGACGTGTCCATCACGTGCGTCGACCTGGTGGAGGAGTTCATCGCCCTCGGCACGAACGTGGGGCTGGTGTTCTGGTACGACCGGAAGAGCGGTGCGATCGAGCGGCTTGCAACGGACAGCGGCTCGCAGGAGCTCACCTGCGTGCGGATCGCTTCGACCGTCGAGTTCATG]




>consensus_2326#1
ATAAACATCAAAACACCGAACAGTCCAACACCCCGTCGAAGAGGAGATTGTGAAAGCGCT
CCCGGCAGCGCCACCAGCAATGGTCCACAAGTGAAGCAAAGCGACGCAAACCTTCCGTTG
GTGTTGGGTGTGCTGAACACGATGAACACCCTGCGGGAATGGTCCCCGCTGGTGGACCTG
GTCAACAGGATCCCGTCCTCCGTCCAGCGCGGTCTGCTCTTTCACGACGTGTCCATCACG
TGCGTCGACCTGGTGGAGGAGTTCATCGCCCTCGGCACGAACGTGGGGCTGGTGTTCTGG
TACGACCGGAAGAGCGGTGCGATCGAGCGGCTTGCAACGGACAGCGGCTCGCAGGAGCTC
ACCTGCGTGCGGATCGCTTCGACCGTCGAGTTCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2326#0      CCGCGCGCAAGTCTTGTTTTCCCTGTTTCTCCAAATAATCGAACGACGGCCGGAAATTCA 60
consensus_2326#1      ------------------------------------------------------------
                                                                                  

consensus_2326#0      ATTCATAATTCCTTATCGTGACTCTCCCTTTCTGGCCAGACAGTCCAACACCCCGTCGAA 120
consensus_2326#1      --------------------ATAAACATCAAAACACCGAACAGTCCAACACCCCGTCGAA 40
                                          *    *         **  *********************

consensus_2326#0      GAGGAGATTGTGAAAGCGCTCCCGGCAGCGCCACCAGCAATGGTCCACAAGTGAAGCAAA 180
consensus_2326#1      GAGGAGATTGTGAAAGCGCTCCCGGCAGCGCCACCAGCAATGGTCCACAAGTGAAGCAAA 100
                      ************************************************************

consensus_2326#0      GCGACGCAAACCTTCCGTTGGTGTTGGGTGTGCTGAACACGATGAACACCCTGCGGGAAT 240
consensus_2326#1      GCGACGCAAACCTTCCGTTGGTGTTGGGTGTGCTGAACACGATGAACACCCTGCGGGAAT 160
                      ************************************************************

consensus_2326#0      GGTCCCCGCTGGTGGACCTGGTCAACAGGATCCCGTCCTCCGTCCAGCGCGGTCTGCTCT 300
consensus_2326#1      GGTCCCCGCTGGTGGACCTGGTCAACAGGATCCCGTCCTCCGTCCAGCGCGGTCTGCTCT 220
                      ************************************************************

consensus_2326#0      TTCACGACGTGTCCATCACGTGCGTCGACCTGGTGGAGGAGTTCATCGCCCTCGGCACGA 360
consensus_2326#1      TTCACGACGTGTCCATCACGTGCGTCGACCTGGTGGAGGAGTTCATCGCCCTCGGCACGA 280
                      ************************************************************

consensus_2326#0      ACGTGGGGCTGGTGTTCTGGTACGACCGGAAGAGCGGTGCGATCGAGCGGCTTGCAACGG 420
consensus_2326#1      ACGTGGGGCTGGTGTTCTGGTACGACCGGAAGAGCGGTGCGATCGAGCGGCTTGCAACGG 340
                      ************************************************************

consensus_2326#0      ACAGCGGCTCGCAGGAGCTCACCTGCGTGCGGATCGCTTCGACCGTCGAGTTCATGGTGG 480
consensus_2326#1      ACAGCGGCTCGCAGGAGCTCACCTGCGTGCGGATCGCTTCGACCGTCGAGTTCATG---- 396
                      ********************************************************    

consensus_2326#0      CGGCCGGTTGCCGTGCCGGGCAGGTGAACATATTCCAGATCCCGAAAACGCCACCGCCAC 540
consensus_2326#1      ------------------------------------------------------------
                                                                                  

consensus_2326#0      ATC 543
consensus_2326#1      ---