cluster # 2336

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Anopheles gambiae
cluster # 2336 cluster # 2336 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2336#0 length = 566 sequences # 1

consensus_2336#1 length = 503 sequences # 1

consensusID : consensus_2336#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [TACGTGGCAGCAAGTTCATACATCTGCGGAGCCTGCCGTTCGGTTCGGCGCGGTGTGTATTTACATTGTGTTTTTCCGCATTTGACTGTCGTGCGTGTGTGTGTGTTTGAAAGTGCGTGTGTGTGTGTGTTTTCGCAAGACAAAGTCACATACACACAACGTGTTTTTATGTCGTTTGTTGCGTCACAGTCGTGGTTCAGGCACAGGTAACAAAAAGAATAGGGATGATTATTCAGTCCCACACTAAGCCATAAAATAGGTGTAGTCACTCACGCACATATGCTCATCTTACGGATCAATGTCGTTTGCTTTCGTACACCGTACCGTGTAACATTGCCACGCGCATACACACACACACACACTCATTCAACCCTCATTTAGTCGTAATGCCACGGGGCAGGGAAGGATACTCTGTTTCAACGTGTTTTACCAAATGCTACTAGTTCAAATAGAGGGCGCCACCAGCGCCCAGTGTGTCCAGCAGTTGGTGTTGGTGGCAAGGCGAACCCTTCTTCTTTAAATGTGTACATTTTGTTCCATTTTCGTACCGCAGCAGCTCGTGCATG]

[+] EMBL BX617714             [TACGTGGCAGCAAGTTCATACATCTGCGGAGCCTGCCGTTCGGTTCGGCGCGGTGTGTATTTACATTGTGTTTTTCCGCATTTGACTGTCGTGCGTGTGTGTGTGTTTGAAAGTGCGTGTGTGTGTGTGTTTTCGCAAGACAAAGTCACATACACACAACGTGTTTTTATGTCGTTTGTTGCGTCACAGTCGTGGTTCAGGCACAGGTAACAAAAAGAATAGGGATGATTATTCAGTCCCACACTAAGCCATAAAATAGGTGTAGTCACTCACGCACATATGCTCATCTTACGGATCAATGTCGTTTGCTTTCGTACACCGTACCGTGTAACATTGCCACGCGCATACACACACACACACACTCATTCAACCCTCATTTAGTCGTAATGCCACGGGGCAGGGAAGGATACTCTGTTTCAACGTGTTTTACCAAATGCTACTAGTTCAAATAGAGGGCGCCACCAGCGCCCAGTGTGTCCAGCAGTTGGTGTTGGTGGCAAGGCGAACCCTTCTTCTTTAAATGTGTACATTTTGTTCCATTTTCGTACCGCAGCAGCTCGTGCATG]




>consensus_2336#0
TACGTGGCAGCAAGTTCATACATCTGCGGAGCCTGCCGTTCGGTTCGGCGCGGTGTGTAT
TTACATTGTGTTTTTCCGCATTTGACTGTCGTGCGTGTGTGTGTGTTTGAAAGTGCGTGT
GTGTGTGTGTTTTCGCAAGACAAAGTCACATACACACAACGTGTTTTTATGTCGTTTGTT
GCGTCACAGTCGTGGTTCAGGCACAGGTAACAAAAAGAATAGGGATGATTATTCAGTCCC
ACACTAAGCCATAAAATAGGTGTAGTCACTCACGCACATATGCTCATCTTACGGATCAAT
GTCGTTTGCTTTCGTACACCGTACCGTGTAACATTGCCACGCGCATACACACACACACAC
ACTCATTCAACCCTCATTTAGTCGTAATGCCACGGGGCAGGGAAGGATACTCTGTTTCAA
CGTGTTTTACCAAATGCTACTAGTTCAAATAGAGGGCGCCACCAGCGCCCAGTGTGTCCA
GCAGTTGGTGTTGGTGGCAAGGCGAACCCTTCTTCTTTAAATGTGTACATTTTGTTCCAT
TTTCGTACCGCAGCAGCTCGTGCATG

consensusID : consensus_2336#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [CCGCGGACGCGTGGGGTGTGTGTGTGTGTGTGTTTGCTACTATTGGCCCCTTGTTCGGTGCACTTAGGTTCGGTCACAGTGGGTGTGAGTGTGTATGTGTGTGTCGTCCATTAGGTGTTGTATTTATTCTCCATCGCTACTTGGATTCTCGATTTAAATGGTGAACTAATGTTAATAGATGTTTGTAGTACGATCAAATAGTAACATTATTATATCGTCACACTCACAACCCACACACACACACACATACACACATCGTGTTTTTATGTCGTTTGTTGCGTCACAGTCGTGGTTCAGGCACAGGTAACAAAAAGAATAGGGATGATTATTCAGTCCCACACTAAGCCATAAAATAGGTGTAGTCACTCACGCACATATGCTCATCTTACGGATCAATGTCGTTTGCTTTCGTACACCGTACCGTGTAACATTGCCACGCGCATACACACACACACACACACTCATTCAACCCTCATTAGTCGTAATGCCACGGGGCAGGGAAG]

[+] EMBL BM597747             [CCGCGGACGCGTGGGGTGTGTGTGTGTGTGTGTTTGCTACTATTGGCCCCTTGTTCGGTGCACTTAGGTTCGGTCACAGTGGGTGTGAGTGTGTATGTGTGTGTCGTCCATTAGGTGTTGTATTTATTCTCCATCGCTACTTGGATTCTCGATTTAAATGGTGAACTAATGTTAATAGATGTTTGTAGTACGATCAAATAGTAACATTATTATATCGTCACACTCACAACCCACACACACACACACATACACACATCGTGTTTTTATGTCGTTTGTTGCGTCACAGTCGTGGTTCAGGCACAGGTAACAAAAAGAATAGGGATGATTATTCAGTCCCACACTAAGCCATAAAATAGGTGTAGTCACTCACGCACATATGCTCATCTTACGGATCAATGTCGTTTGCTTTCGTACACCGTACCGTGTAACATTGCCACGCGCATACACACACACACACACACTCATTCAACCCTCATTAGTCGTAATGCCACGGGGCAGGGAAG]




>consensus_2336#1
CCGCGGACGCGTGGGGTGTGTGTGTGTGTGTGTTTGCTACTATTGGCCCCTTGTTCGGTG
CACTTAGGTTCGGTCACAGTGGGTGTGAGTGTGTATGTGTGTGTCGTCCATTAGGTGTTG
TATTTATTCTCCATCGCTACTTGGATTCTCGATTTAAATGGTGAACTAATGTTAATAGAT
GTTTGTAGTACGATCAAATAGTAACATTATTATATCGTCACACTCACAACCCACACACAC
ACACACATACACACATCGTGTTTTTATGTCGTTTGTTGCGTCACAGTCGTGGTTCAGGCA
CAGGTAACAAAAAGAATAGGGATGATTATTCAGTCCCACACTAAGCCATAAAATAGGTGT
AGTCACTCACGCACATATGCTCATCTTACGGATCAATGTCGTTTGCTTTCGTACACCGTA
CCGTGTAACATTGCCACGCGCATACACACACACACACACACTCATTCAACCCTCATTAGT
CGTAATGCCACGGGGCAGGGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2336#0      ------------------------------------------------------------
consensus_2336#1      CCGCGGACGCGTGGGGTGTGTGTGTGTGTGTGTTTGCTACTATTGGCCCCTTGTTCGGTG 60
                                                                                  

consensus_2336#0      ---------TACGTGGCAGCAAGTTCATACATCTGCGGAGCCTGCCGTTCGGTTCGGCGC 51
consensus_2336#1      CACTTAGGTTCGGTCACAGTGGGTGTGAGTGTGTATGT-GTGTGTCGTCCA-TTAGGTGT 118
                               *  **  ***   **       * *  *  *  ** *** *  ** ** * 

consensus_2336#0      GGTGTGTATT-TACATTG-TGTTT---TTCCGCATTTGACTGTCGTGCGTGTGT----GT 102
consensus_2336#1      TGTATTTATTCTCCATCGCTACTTGGATTCTCGATTTAAATGGTGAACTAATGTTAATAG 178
                       ** * **** * *** * *  **   ***   **** * **  *  *   ***      

consensus_2336#0      GTGTTTGAA---------AGTGCGTGTGTGTGTGTGTTTTCGCA------------AGAC 141
consensus_2336#1      ATGTTTGTAGTACGATCAAATAGTAACATTATTATATCGTCACACTCACAACCCACACAC 238
                       ****** *         * *       *   * * *  ** **            * **

consensus_2336#0      AAAGTCACATACACACAACGTGTTTTTATGTCGTTTGTTGCGTCACAGTCGTGGTTCAGG 201
consensus_2336#1      ACACACACATACACACATCGTGTTTTTATGTCGTTTGTTGCGTCACAGTCGTGGTTCAGG 298
                      * *  ************ ******************************************

consensus_2336#0      CACAGGTAACAAAAAGAATAGGGATGATTATTCAGTCCCACACTAAGCCATAAAATAGGT 261
consensus_2336#1      CACAGGTAACAAAAAGAATAGGGATGATTATTCAGTCCCACACTAAGCCATAAAATAGGT 358
                      ************************************************************

consensus_2336#0      GTAGTCACTCACGCACATATGCTCATCTTACGGATCAATGTCGTTTGCTTTCGTACACCG 321
consensus_2336#1      GTAGTCACTCACGCACATATGCTCATCTTACGGATCAATGTCGTTTGCTTTCGTACACCG 418
                      ************************************************************

consensus_2336#0      TACCGTGTAACATTGCCACGCGCATACACACACACACACAC--TCATTCAACCCTCATTT 379
consensus_2336#1      TACCGTGTAACATTGCCACGCGCATACACACACACACACACACTCATTCAACCCTCATT- 477
                      *****************************************  **************** 

consensus_2336#0      AGTCGTAATGCCACGGGGCAGGGAAGGATACTCTGTTTCAACGTGTTTTACCAAATGCTA 439
consensus_2336#1      AGTCGTAATGCCACGGGGCAGGGAAG---------------------------------- 503
                      **************************                                  

consensus_2336#0      CTAGTTCAAATAGAGGGCGCCACCAGCGCCCAGTGTGTCCAGCAGTTGGTGTTGGTGGCA 499
consensus_2336#1      ------------------------------------------------------------
                                                                                  

consensus_2336#0      AGGCGAACCCTTCTTCTTTAAATGTGTACATTTTGTTCCATTTTCGTACCGCAGCAGCTC 559
consensus_2336#1      ------------------------------------------------------------
                                                                                  

consensus_2336#0      GTGCATG 566
consensus_2336#1      -------