cluster # 2341

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Anopheles gambiae
cluster # 2341 cluster # 2341 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2341#0 length = 320 sequences # 1

consensus_2341#1 length = 153 sequences # 1

consensusID : consensus_2341#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 320
fasta sequence

                              [CCGCCCACGCGTCCGATTTTACAGAAACATTGCGTCGATCAGACGATAAAAACTAAATCAAAATGTATCTAATGTACGATTTAAATGAAAATGGCGAAAGGGTTTACACCCTGTAAGAAAAACAACGCAGAAGGCAAGCCGACCCAATCGGCACATCCGGCGAGATTTTCTCCAGAGGACAAGTACTCTCGCTACCGTATCATCATCAAGAAGCGTTTTGGATTGCTGCTGACGCAGAAGCCCGAGCCCGTGTACTGATCGGCTGAATCGTTCAAAATTCCACTCTACCGTTTAAAAATAAAGCTCCGAATTTAAGATGT]

[+] EMBL BM592728             [CCGCCCACGCGTCCGATTTTACAGAAACATTGCGTCGATCAGACGATAAAAACTAAATCAAAATGTATCTAATGTACGATTTAAATGAAAATGGCGAAAGGGTTTACACCCTGTAAGAAAAACAACGCAGAAGGCAAGCCGACCCAATCGGCACATCCGGCGAGATTTTCTCCAGAGGACAAGTACTCTCGCTACCGTATCATCATCAAGAAGCGTTTTGGATTGCTGCTGACGCAGAAGCCCGAGCCCGTGTACTGATCGGCTGAATCGTTCAAAATTCCACTCTACCGTTTAAAAATAAAGCTCCGAATTTAAGATGT]




>consensus_2341#0
CCGCCCACGCGTCCGATTTTACAGAAACATTGCGTCGATCAGACGATAAAAACTAAATCA
AAATGTATCTAATGTACGATTTAAATGAAAATGGCGAAAGGGTTTACACCCTGTAAGAAA
AACAACGCAGAAGGCAAGCCGACCCAATCGGCACATCCGGCGAGATTTTCTCCAGAGGAC
AAGTACTCTCGCTACCGTATCATCATCAAGAAGCGTTTTGGATTGCTGCTGACGCAGAAG
CCCGAGCCCGTGTACTGATCGGCTGAATCGTTCAAAATTCCACTCTACCGTTTAAAAATA
AAGCTCCGAATTTAAGATGT

consensusID : consensus_2341#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 153
fasta sequence

                              [CACTGTTGGCCTACTGGCTACTGGAAACGTGCATTCGGGAAACGATTTTACAGAAACATTGCGTCGATCAGACGATAAAAACTAAATCAAAATGTATCTAATGTACGATTTGAATGAAAATGGCGAAAGGGTTTACACCCTGAAGAAAAAAAA]

[-] EMBL CNS08JVZ             [CACTGTTGGCCTACTGGCTACTGGAAACGTGCATTCGGGAAACGATTTTACAGAAACATTGCGTCGATCAGACGATAAAAACTAAATCAAAATGTATCTAATGTACGATTTGAATGAAAATGGCGAAAGGGTTTACACCCTGAAGAAAAAAAA]




>consensus_2341#1
CACTGTTGGCCTACTGGCTACTGGAAACGTGCATTCGGGAAACGATTTTACAGAAACATT
GCGTCGATCAGACGATAAAAACTAAATCAAAATGTATCTAATGTACGATTTGAATGAAAA
TGGCGAAAGGGTTTACACCCTGAAGAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2341#0      --------------------------CCGCCCACGCGTC---CGATTTTACAGAAACATT 31
consensus_2341#1      CACTGTTGGCCTACTGGCTACTGGAAACGTGCATTCGGGAAACGATTTTACAGAAACATT 60
                                                 **  **  **     ******************

consensus_2341#0      GCGTCGATCAGACGATAAAAACTAAATCAAAATGTATCTAATGTACGATTTAAATGAAAA 91
consensus_2341#1      GCGTCGATCAGACGATAAAAACTAAATCAAAATGTATCTAATGTACGATTTGAATGAAAA 120
                      *************************************************** ********

consensus_2341#0      TGGCGAAAGGGTTTACACCCTGTAAGAAAAACAACGCAGAAGGCAAGCCGACCCAATCGG 151
consensus_2341#1      TGGCGAAAGGGTTTACACCCTG-AAGAAAAAAAA-------------------------- 153
                      ********************** ******** **                          

consensus_2341#0      CACATCCGGCGAGATTTTCTCCAGAGGACAAGTACTCTCGCTACCGTATCATCATCAAGA 211
consensus_2341#1      ------------------------------------------------------------
                                                                                  

consensus_2341#0      AGCGTTTTGGATTGCTGCTGACGCAGAAGCCCGAGCCCGTGTACTGATCGGCTGAATCGT 271
consensus_2341#1      ------------------------------------------------------------
                                                                                  

consensus_2341#0      TCAAAATTCCACTCTACCGTTTAAAAATAAAGCTCCGAATTTAAGATGT 320
consensus_2341#1      -------------------------------------------------