These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence [AAACAATAAATGTTACTACGTTAAGTAAGTAATACACCGCAAGCGAACCAAATCAATATAGGAAGCAGTAGACGAAGAAGAACAAACAAACCCCAAATACCTAAATGTGTCGAAACGAAACAAAACATCACAACACTCACTCACTGACTCACACATACACACACACACACACACACACACACCATCCACGTGCATCTTCTCTGCGTGGTGGCAAGAACAGAAGCACGCAGGACATTTGCTCCTTAACTAGACTGTGCAACTATCGCTTGGCATTCCGCGTAAGTGGAACTGGTCGGAACTGGTATTACTGTATAGGGAAATATCTCCTGTTTTAGTAGTCGGTCGGGTAATGCTAATTCTTCCCTGTTGTATTCTCGGTCTCATCGTGATTGATGGTGGTTGAACTGTCTCTCTGTTAGTGCGCTAACGCAGACGACTGAAATAGGCGGATAGTTGACTTTAAACAACAATAGAAAAAGGAAGAGAGCAATGTAAAAGACCGAAATCGTTTGTTTTACGTGTGTGTCTGTTTTTGGTGTGCAAAAGGATGGAATGCACAATTCATTTTTTGTTTTTGTATACAAATAAAGGATGCACATAACGTCCTGTTTTTTTCTTAAAAAAAAAGGGATCGCAACTATTGATCCTACGAAACAAGTATTAAAAGTCGAGAGGAACACATGGTGGNTGAGTTGCGCAACAAGCACGC] [+] EMBL BX621318 [AAACAATAAATGTTACTACGTTAAGTAAGTAATACACCGCAAGCGAACCAAATCAATATAGGAAGCAGTAGACGAAGAAGAACAAACAAACCCCAAATACCTAAATGTGTCGAAACGAAACAAAACATCACAACACTCACTCACTGACTCACACATACACACACACACACACACACACACACCATCCACGTGCATCTTCTCTGCGTGGTGGCAAGAACAGAAGCACGCAGGACATTTGCTCCTTAACTAGACTGTGCAACTATCGCTTGGCATTCCGCGTAAGTGGAACTGGTCGGAACTGGTATTACTGTATAGGGAAATATCTCCTGTTTTAGTAGTCGGTCGGGTAATGCTAATTCTTCCCTGTTGTATTCTCGGTCTCATCGTGATTGATGGTGGTTGAACTGTCTCTCTGTTAGTGCGCTAACGCAGACGACTGAAATAGGCGGATAGTTGACTTTAAACAACAATAGAAAAAGGAAGAGAGCAATGTAAAAGACCGAAATCGTTTGTTTTACGTGTGTGTCTGTTTTTGGTGTGCAAAAGGATGGAATGCACAATTCATTTTTTGTTTTTGTATACAAATAAAGGATGCACATAACGTCCTGTTTTTTTCTTAAAAAAAAAGGGATCGCAACTATTGATCCTACGAAACAAGTATTAAAAGTCGAGAGGAACACATGGTGGNTGAGTTGCGCAACAAGCACGC] consensusID : consensus_2342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 355 fasta sequence [TGCCCCCAGGCGNTATAAGTGGAACTGGTCGGAACTGGTATACTGTATAGGGAAATATCTCCTGTTTTAGTAGTCGGTCGGGTAATGCTAATTCTTCCCTGTGTATTCTCGGTCTCATCGTGATTGATGGTGGTTGAACTGTCTCTCTGTTAGTGCGCTAACGCAGACGCCTGAAATAGGCGGATAGTTGACTTTAAACAACAATAGAAAAAGGAAGAGAGCAATGTAAAAGACCGAAATCGTTTGTTTTACGTGTGTGTCTGTTTTGGTGTGCAAAAGGATGGAATGCACAATTCATTTTGTTTTGTATACAAATAAAGGATGCACATAAGTCCTGTTTTTTTCTTAAAAAAAA] [+] EMBL AL697481 [TGCCCCCAGGCGNTATAAGTGGAACTGGTCGGAACTGGTATACTGTATAGGGAAATATCTCCTGTTTTAGTAGTCGGTCGGGTAATGCTAATTCTTCCCTGTGTATTCTCGGTCTCATCGTGATTGATGGTGGTTGAACTGTCTCTCTGTTAGTGCGCTAACGCAGACGCCTGAAATAGGCGGATAGTTGACTTTAAACAACAATAGAAAAAGGAAGAGAGCAATGTAAAAGACCGAAATCGTTTGTTTTACGTGTGTGTCTGTTTTGGTGTGCAAAAGGATGGAATGCACAATTCATTTTGTTTTGTATACAAATAAAGGATGCACATAAGTCCTGTTTTTTTCTTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2342#0 AAACAATAAATGTTACTACGTTAAGTAAGTAATACACCGCAAGCGAACCAAATCAATATA 60 consensus_2342#1 ------------------------------------------------------------ consensus_2342#0 GGAAGCAGTAGACGAAGAAGAACAAACAAACCCCAAATACCTAAATGTGTCGAAACGAAA 120 consensus_2342#1 ------------------------------------------------------------ consensus_2342#0 CAAAACATCACAACACTCACTCACTGACTCACACATACACACACACACACACACACACAC 180 consensus_2342#1 ------------------------------------------------------------ consensus_2342#0 ACCATCCACGTGCATCTTCTCTGCGTGGTGGCAAGAACAGAAGCACGCAGGACATTTGCT 240 consensus_2342#1 ------------------------------------------------------------ consensus_2342#0 CCTTAACTAGACTGTGCAACTATCGCTTGGCATTCCGCGTAAGTGGAACTGGTCGGAACT 300 consensus_2342#1 --------------------TGCCCCCAGGCGNT----ATAAGTGGAACTGGTCGGAACT 36 * * * *** * ********************* consensus_2342#0 GGTATTACTGTATAGGGAAATATCTCCTGTTTTAGTAGTCGGTCGGGTAATGCTAATTCT 360 consensus_2342#1 GGTAT-ACTGTATAGGGAAATATCTCCTGTTTTAGTAGTCGGTCGGGTAATGCTAATTCT 95 ***** ****************************************************** consensus_2342#0 TCCCTGTTGTATTCTCGGTCTCATCGTGATTGATGGTGGTTGAACTGTCTCTCTGTTAGT 420 consensus_2342#1 TCCCTGT-GTATTCTCGGTCTCATCGTGATTGATGGTGGTTGAACTGTCTCTCTGTTAGT 154 ******* **************************************************** consensus_2342#0 GCGCTAACGCAGACGACTGAAATAGGCGGATAGTTGACTTTAAACAACAATAGAAAAAGG 480 consensus_2342#1 GCGCTAACGCAGACGCCTGAAATAGGCGGATAGTTGACTTTAAACAACAATAGAAAAAGG 214 *************** ******************************************** consensus_2342#0 AAGAGAGCAATGTAAAAGACCGAAATCGTTTGTTTTACGTGTGTGTCTGTTTTTGGTGTG 540 consensus_2342#1 AAGAGAGCAATGTAAAAGACCGAAATCGTTTGTTTTACGTGTGTGTCTGTTTT-GGTGTG 273 ***************************************************** ****** consensus_2342#0 CAAAAGGATGGAATGCACAATTCATTTTTTGTTTTTGTATACAAATAAAGGATGCACATA 600 consensus_2342#1 CAAAAGGATGGAATGCACAATTCATTTTG---TTTTGTATACAAATAAAGGATGCACATA 330 **************************** **************************** consensus_2342#0 ACGTCCTGTTTTTTTCTTAAAAAAAAAGGGATCGCAACTATTGATCCTACGAAACAAGTA 660 consensus_2342#1 A-GTCCTGTTTTTTTCTTAAAAAAAA---------------------------------- 355 * ************************ consensus_2342#0 TTAAAAGTCGAGAGGAACACATGGTGGNTGAGTTGCGCAACAAGCACGC 709 consensus_2342#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||