These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [CCGGTACAGTTTGCGTGTTAACAAGTTTTCTAGCGTAGACGATCCGGATCGGATCCGGATCGTGTATAGAAAGTGGTGTGTAACGAGGGGGGGAGAGAGCAGAGTAATCGTGAAGGGGGAAAAAGGACAAGTGGTAGCAAGGAAAACAAGGCCAAGATGAAAGAGACCATACAAAATAAATGTAATCCACGACCTGATATGAAACCCAATGTAGTGTTAATTTTAATTTGCAATGTATGTTTTTTGTTTGTTTAATATTATGCATATAAGTAATACGAGAAAGAGTGAATGTTTGTTGAACATACATAAAGTTTCTTGTGTTGTGTAAGCAAAACAGTATAATTATCTCAGGCAAAAGCGTTCTTAGTTTCCCTGGATGAAGATAAACATAAGCTGAATTGTAATTCCCACACAACAATCAAACAACAAATGCACACTCACACATACCCGCACACTTGCGCATATTGTTACGTTTTTTGTAACGCTTCGTTTTGGTTTTAAAACAGTGTAACGCCATGTACAAGTTCATTGTTGCAATGAAACTGATTCGTTTGTGAGTGGTACTCCGCTGCAACAAACAGTAAAGCGCGATACCATCTTCCTCATTGTTTAACGTCATTCACTGCTACTAAACTTGTCGGAGAT] [+] EMBL BM597434 [CCGGTACAGTTTGCGTGTTAACAAGTTTTCTAGCGTAGACGATCCGGATCGGATCCGGATCGTGTATAGAAAGTGGTGTGTAACGAGGGGGGGAGAGAGCAGAGTAATCGTGAAGGGGGAAAAAGGACAAGTGGTAGCAAGGAAAACAAGGCCAAGATGAAAGAGACCATACAAAATAAATGTAATCCACGACCTGATATGAAACCCAATGTAGTGTTAATTTTAATTTGCAATGTATGTTTTTTGTTTGTTTAATATTATGCATATAAGTAATACGAGAAAGAGTGAATGTTTGTTGAACATACATAAAGTTTCTTGTGTTGTGTAAGCAAAACAGTATAATTATCTCAGGCAAAAGCGTTCTTAGTTTCCCTGGATGAAGATAAACATAAGCTGAATTGTAATTCCCACACAACAATCAAACAACAAATGCACACTCACACATACCCGCACACTTGCGCATATTGTTACGTTTTTTGTAACGCTTCGTTTTGGTTTTAAAACAGTGTAACGCCATGTACAAGTTCATTGTTGCAATGAAACTGATTCGTTTGTGAGTGGTACTCCGCTGCAACAAACAGTAAAGCGCGATACCATCTTCCTCATTGTTTAACGTCATTCACTGCTACTAAACTTGTCGGAGAT] consensusID : consensus_2363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGACAAGTGGTAGCAAGGAAAACAAGGCCAAGATGAAAGAGACCATACAAAATAAATGTAATCCACGACCTGATATGAAACCCAATGTAGTGTTAATTTTAATTTGCAATGTATGTTTTTTGTTTGTTTAATATTATGCATATAAGTAATACGAGAAAGAGTGAATGTTTGTTGAACATACATAAAGTTTCTTGTGTTGTGTAAGCAAAACAGTATAATTATCTCAGGCAAAAGCGTTCTTAGTTTCCCTGGATGAAGATAAACATAAGCTGAATTGTAATTCCCACACAACAATCAAACAACAAATGCACACTCACACATACCCGCACACTTGCGCATATTGTTACGTTTTTTGTAACGCTTCGTTTTGGTTTTAAAACAGTGTAACGCCATGTACAAGTTCATTGTTGCAATGAAACTGATTCGTTTGTGAGTGGTACTCCGCTGCAACAAACAGTAAAGCGCGATACCATCTTCCTCATTGTTTAACGTCATTCACTGCTACTAAACTTGTCGGAGATGTACAAAATGAATTCTAGTTTCAGTTTCTGGGATGGTTTTTAATTTGGATATAGATCCGGCCGGC] [+] EMBL BM652368 [CCGCCCACGCGTCCGCCCACGCGTCCGGACAAGTGGTAGCAAGGAAAACAAGGCCAAGATGAAAGAGACCATACAAAATAAATGTAATCCACGACCTGATATGAAACCCAATGTAGTGTTAATTTTAATTTGCAATGTATGTTTTTTGTTTGTTTAATATTATGCATATAAGTAATACGAGAAAGAGTGAATGTTTGTTGAACATACATAAAGTTTCTTGTGTTGTGTAAGCAAAACAGTATAATTATCTCAGGCAAAAGCGTTCTTAGTTTCCCTGGATGAAGATAAACATAAGCTGAATTGTAATTCCCACACAACAATCAAACAACAAATGCACACTCACACATACCCGCACACTTGCGCATATTGTTACGTTTTTTGTAACGCTTCGTTTTGGTTTTAAAACAGTGTAACGCCATGTACAAGTTCATTGTTGCAATGAAACTGATTCGTTTGTGAGTGGTACTCCGCTGCAACAAACAGTAAAGCGCGATACCATCTTCCTCATTGTTTAACGTCATTCACTGCTACTAAACTTGTCGGAGATGTACAAAATGAATTCTAGTTTCAGTTTCTGGGATGGTTTTTAATTTGGATATAGATCCGGCCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2363#0 CCGGTACAGTTTGCGTGTTAACAAGTTTTCTAGCGTAGACGATCCGGATCGGATCCGGAT 60 consensus_2363#1 ------------------------------------------------------------ consensus_2363#0 CGTGTATAGAAAGTGGTGTGTAACGAGGGGGGGAGAGAGCAGAGTAATCGTGAAGGGGGA 120 consensus_2363#1 -----------------------------------CCGCCCACGCGTCCGCCCACGCGTC 25 * * ** * * * consensus_2363#0 AAAAGGACAAGTGGTAGCAAGGAAAACAAGGCCAAGATGAAAGAGACCATACAAAATAAA 180 consensus_2363#1 C---GGACAAGTGGTAGCAAGGAAAACAAGGCCAAGATGAAAGAGACCATACAAAATAAA 82 ******************************************************** consensus_2363#0 TGTAATCCACGACCTGATATGAAACCCAATGTAGTGTTAATTTTAATTTGCAATGTATGT 240 consensus_2363#1 TGTAATCCACGACCTGATATGAAACCCAATGTAGTGTTAATTTTAATTTGCAATGTATGT 142 ************************************************************ consensus_2363#0 TTTTTGTTTGTTTAATATTATGCATATAAGTAATACGAGAAAGAGTGAATGTTTGTTGAA 300 consensus_2363#1 TTTTTGTTTGTTTAATATTATGCATATAAGTAATACGAGAAAGAGTGAATGTTTGTTGAA 202 ************************************************************ consensus_2363#0 CATACATAAAGTTTCTTGTGTTGTGTAAGCAAAACAGTATAATTATCTCAGGCAAAAGCG 360 consensus_2363#1 CATACATAAAGTTTCTTGTGTTGTGTAAGCAAAACAGTATAATTATCTCAGGCAAAAGCG 262 ************************************************************ consensus_2363#0 TTCTTAGTTTCCCTGGATGAAGATAAACATAAGCTGAATTGTAATTCCCACACAACAATC 420 consensus_2363#1 TTCTTAGTTTCCCTGGATGAAGATAAACATAAGCTGAATTGTAATTCCCACACAACAATC 322 ************************************************************ consensus_2363#0 AAACAACAAATGCACACTCACACATACCCGCACACTTGCGCATATTGTTACGTTTTTTGT 480 consensus_2363#1 AAACAACAAATGCACACTCACACATACCCGCACACTTGCGCATATTGTTACGTTTTTTGT 382 ************************************************************ consensus_2363#0 AACGCTTCGTTTTGGTTTTAAAACAGTGTAACGCCATGTACAAGTTCATTGTTGCAATGA 540 consensus_2363#1 AACGCTTCGTTTTGGTTTTAAAACAGTGTAACGCCATGTACAAGTTCATTGTTGCAATGA 442 ************************************************************ consensus_2363#0 AACTGATTCGTTTGTGAGTGGTACTCCGCTGCAACAAACAGTAAAGCGCGATACCATCTT 600 consensus_2363#1 AACTGATTCGTTTGTGAGTGGTACTCCGCTGCAACAAACAGTAAAGCGCGATACCATCTT 502 ************************************************************ consensus_2363#0 CCTCATTGTTTAACGTCATTCACTGCTACTAAACTTGTCGGAGAT--------------- 645 consensus_2363#1 CCTCATTGTTTAACGTCATTCACTGCTACTAAACTTGTCGGAGATGTACAAAATGAATTC 562 ********************************************* consensus_2363#0 -------------------------------------------------- consensus_2363#1 TAGTTTCAGTTTCTGGGATGGTTTTTAATTTGGATATAGATCCGGCCGGC 612 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||