cluster # 2366

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Anopheles gambiae
cluster # 2366 cluster # 2366 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2366#0 length = 543 sequences # 1

consensus_2366#1 length = 504 sequences # 1

consensusID : consensus_2366#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [GCCAATGAAGCGCCAGCAAAACCGGACGTGGACTTGAAGCATGACACAGCGACAGTGCGATCTGAATCGGCTACTAGCTTAGAATCGAATAAATTGAGCACCCCTGATACTCCGGCCAATGATCCGATGGATATGGAAGTCGATATGAATATCATAAAAGCACCGATCGCAGGCAAAGTCATGTCCGTGGAAGGAAACAGCAACAGCAGCACTATTGGATCGAGCCGTGCACCGGAATCTAGCGCCATGCTGATAGATGACGACGACGATGAACCGTACTCTCCTGGAGGTGGGAGCGATGATAGTAATTTCGCCGATGTGACCGCTATCGTCGATACGTCAAAGGTGGCACGTACTTCAACCTCCGAACACGGGGTTGATATAGAAGAAGAGCGAATACGCATCGCCATGGATGAACTGAACAGGAAAATTGCAGAACAAAAGAACGAAATCGTTGGTCTGATCAGCATGGCCGAACTTAAGGAGGACGAAATTAATTCCGCCTTACCGCCGTCACTGATCAACGAAATACCCATACCTCCC]

[+] EMBL BX619026             [GCCAATGAAGCGCCAGCAAAACCGGACGTGGACTTGAAGCATGACACAGCGACAGTGCGATCTGAATCGGCTACTAGCTTAGAATCGAATAAATTGAGCACCCCTGATACTCCGGCCAATGATCCGATGGATATGGAAGTCGATATGAATATCATAAAAGCACCGATCGCAGGCAAAGTCATGTCCGTGGAAGGAAACAGCAACAGCAGCACTATTGGATCGAGCCGTGCACCGGAATCTAGCGCCATGCTGATAGATGACGACGACGATGAACCGTACTCTCCTGGAGGTGGGAGCGATGATAGTAATTTCGCCGATGTGACCGCTATCGTCGATACGTCAAAGGTGGCACGTACTTCAACCTCCGAACACGGGGTTGATATAGAAGAAGAGCGAATACGCATCGCCATGGATGAACTGAACAGGAAAATTGCAGAACAAAAGAACGAAATCGTTGGTCTGATCAGCATGGCCGAACTTAAGGAGGACGAAATTAATTCCGCCTTACCGCCGTCACTGATCAACGAAATACCCATACCTCCC]




>consensus_2366#0
GCCAATGAAGCGCCAGCAAAACCGGACGTGGACTTGAAGCATGACACAGCGACAGTGCGA
TCTGAATCGGCTACTAGCTTAGAATCGAATAAATTGAGCACCCCTGATACTCCGGCCAAT
GATCCGATGGATATGGAAGTCGATATGAATATCATAAAAGCACCGATCGCAGGCAAAGTC
ATGTCCGTGGAAGGAAACAGCAACAGCAGCACTATTGGATCGAGCCGTGCACCGGAATCT
AGCGCCATGCTGATAGATGACGACGACGATGAACCGTACTCTCCTGGAGGTGGGAGCGAT
GATAGTAATTTCGCCGATGTGACCGCTATCGTCGATACGTCAAAGGTGGCACGTACTTCA
ACCTCCGAACACGGGGTTGATATAGAAGAAGAGCGAATACGCATCGCCATGGATGAACTG
AACAGGAAAATTGCAGAACAAAAGAACGAAATCGTTGGTCTGATCAGCATGGCCGAACTT
AAGGAGGACGAAATTAATTCCGCCTTACCGCCGTCACTGATCAACGAAATACCCATACCT
CCC

consensusID : consensus_2366#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence

                              [GAATCGCCCGAGGTTAAATCGTTGGTCTGATCAGCATGGCCGAACTTAAGCGAGGACGAAATTAATTCCGCCTTACCGCCGTCACTGATCAACGAAATACCCATACCTCCCAACCTATCACAAATTCTGGCCAGTATTAAGGGAGGCAGTAATACACGCAGCAGGTGTTGCAAGTGTGCCGTCCGTAGAAAACGTCGGCGAAGTTTCTTCTGGGCCATCTTCCGGCTCACTAGCGGCAGAACCCGTAACGGCTGCCACGAACCGAACTTCCGAAGCGAATGCAGACGAGGAGGAGNGAGGAATACAACCCGACGACACCTTCCCTGTACTGTGGATACAAAGCTGCACCATCTATTCCTTACTCTGCCATACCAGTTGCCAACAGTCAAGGTGATATAGATGAACGCATTCTCCCTGCAACGCTGCTGCCAGCGACGGTGNGCGGTACCAAACTGCTGCGTCGTATATGATCCTGTCACTTCCCTTACTGCTGCTGGAGACAGT]

[+] EMBL AL933271             [GAATCGCCCGAGGTTAAATCGTTGGTCTGATCAGCATGGCCGAACTTAAGCGAGGACGAAATTAATTCCGCCTTACCGCCGTCACTGATCAACGAAATACCCATACCTCCCAACCTATCACAAATTCTGGCCAGTATTAAGGGAGGCAGTAATACACGCAGCAGGTGTTGCAAGTGTGCCGTCCGTAGAAAACGTCGGCGAAGTTTCTTCTGGGCCATCTTCCGGCTCACTAGCGGCAGAACCCGTAACGGCTGCCACGAACCGAACTTCCGAAGCGAATGCAGACGAGGAGGAGNGAGGAATACAACCCGACGACACCTTCCCTGTACTGTGGATACAAAGCTGCACCATCTATTCCTTACTCTGCCATACCAGTTGCCAACAGTCAAGGTGATATAGATGAACGCATTCTCCCTGCAACGCTGCTGCCAGCGACGGTGNGCGGTACCAAACTGCTGCGTCGTATATGATCCTGTCACTTCCCTTACTGCTGCTGGAGACAGT]




>consensus_2366#1
GAATCGCCCGAGGTTAAATCGTTGGTCTGATCAGCATGGCCGAACTTAAGCGAGGACGAA
ATTAATTCCGCCTTACCGCCGTCACTGATCAACGAAATACCCATACCTCCCAACCTATCA
CAAATTCTGGCCAGTATTAAGGGAGGCAGTAATACACGCAGCAGGTGTTGCAAGTGTGCC
GTCCGTAGAAAACGTCGGCGAAGTTTCTTCTGGGCCATCTTCCGGCTCACTAGCGGCAGA
ACCCGTAACGGCTGCCACGAACCGAACTTCCGAAGCGAATGCAGACGAGGAGGAGNGAGG
AATACAACCCGACGACACCTTCCCTGTACTGTGGATACAAAGCTGCACCATCTATTCCTT
ACTCTGCCATACCAGTTGCCAACAGTCAAGGTGATATAGATGAACGCATTCTCCCTGCAA
CGCTGCTGCCAGCGACGGTGNGCGGTACCAAACTGCTGCGTCGTATATGATCCTGTCACT
TCCCTTACTGCTGCTGGAGACAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2366#0      GCCAATGAAGCGCCAGCAAAACCGGACGTGGACTTGA--AGCATGACACAGCGACAGTGC 58
consensus_2366#1      ------GAATCGCCCG-AGGTTAAATCGTTGGTCTGATCAGCATGGCCGAACTTAAGCGA 53
                            *** **** * *        *** *   ***  ****** *  * *   ** * 

consensus_2366#0      GATCTGAATCGGCTACTAGCTTAGAATCG-----AATAAATTGAGCACCCCTGATACTCC 113
consensus_2366#1      GGACGAAATTAATT-CCGCCTTACCGCCGTCACTGATCAACGAAATACCCAT-ACCTCCC 111
                      *  *  ***    * *   ****    **      ** **   *  **** * *    **

consensus_2366#0      GGCCAATGATCCGATGGATATGGAAGTCGATATGAATATCATAAAAGCACCGATCGCAGG 173
consensus_2366#1      AACCTATCACAAATTCTGGCCAGTATTAAGGGAGGCAGTAATACACGCAGCAGGTGTTGC 171
                        ** ** *     *       * * *      *    * *** * *** *    *  * 

consensus_2366#0      CAAAGTCATGTCCGTGGAAGGAAACAGCAACAGCAGCACTATTGGATCGAGCCGTGCACC 233
consensus_2366#1      AAGTGTGCCGTCCGTAGA---AAACGTCGGCGAAGTTTCTTCTGG-----GCCATCTTCC 223
                       *  **   ****** **   ****  *  *       **  ***     *** *   **

consensus_2366#0      GGAAT-CTAGCGCCATGCTGATAGATGACGACGACGATGAACCGTACTCTCCTGGAGGTG 292
consensus_2366#1      GGCTCACTAGCGGCAGA---ACCCGTAACGGCTGCCACGAACCGAACTTCC---GAAGCG 277
                      **    ****** **     *    * *** *  * * ****** ***  *   ** * *

consensus_2366#0      GGAGCGATGATAGTAATTTCGCCGATGTGACCGCTATCGTCGATACGTCAAAGGTGGCAC 352
consensus_2366#1      AATGCAGACGAGGAGGAGNGAGGAATACAACC-----CGACGACACCTTCCCTGTACTGT 332
                         **       *           **   ***     ** *** ** *     **     

consensus_2366#0      GTACTTCAACCTCCGAACACGGGGTTGATATAGAAGAAGAGCGAATACGCATCGCCATGG 412
consensus_2366#1      GGATACAAAGCTGC-ACCATCTATTCCTTACTCTGCCATACCAGTTGCCAACAGTCA-AG 390
                      * *    ** ** * * **     *   **       * * *   * *  *  * **  *

consensus_2366#0      ATGAACTGAACAGGAAAATTGCAGAACAAAAGAACGAAATCGTTGGTC-TGATCAGCATG 471
consensus_2366#1      GTGATATAGATGAACGCATTCT----CCCTGCAACGCTGCTGCCAGCGACGGTGNGCGGT 446
                       ***  *  *       ***      *     ****     *   *    * *  **   

consensus_2366#0      GCCGAACTTAAGGAGGACGAAATTAATTCCGCCTTACCGCCGTCACTGATCAACGAAATA 531
consensus_2366#1      ACCAAACTGCTG--CGTCGTATATGATCCTGTC--ACTTCCCTTACTGCTGCTGGAGACA 502
                       ** ****   *   * ** *  * ** * * *  **  ** * **** *    ** * *

consensus_2366#0      CCCATACCTCCC 543
consensus_2366#1      GT---------- 504