cluster # 2373

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Anopheles gambiae
cluster # 2373 cluster # 2373 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2373#0 length = 699 sequences # 1

consensus_2373#1 length = 566 sequences # 1

consensusID : consensus_2373#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 699
fasta sequence

                              [CCGGTGGAGAACGCGAACAAGCGCGATCCGTTCGGCGACAACCGATCGAACGGGTTCGGTGCGGGCGAGCCTGCCGAGACGGGCTTCGGTGACGATTTCAAGTCGTCGAACGGTTTCGCCACCCAGTTCGATGTCGGGTCGAACGGCGGATTTCACGGCGGTACTGCGGCGGCGGGCGGCTTTGGGGAAGACGGGTTCGGTGCGTTTGGGGCGAAAGCGCCGTCGCACGCCATCGGTGGGGGAGCGGCGGATCCGTTCGGATCGGGCGCTGCCGCCGATCCGTTCGGTGATCGGAAAGGTAGCGGCAGTGTAGCAGCAGAGCCCGCCAAAGATGAGTTCGGATGCGATCCGTTTGCCATACTACATGCGCCGACCACTGCCGGTCAAGCACTGTCGCCTAGTCCCAGCAAATCCGTTGCCCCGCCACGTCCGGAATCGCCCAGCCCGGCACTGCCCGCCGAAGAAGGCAAAGCAACCACCACCGCGTCCCGCTCCACCACGGACCAATGCAGGGCCCTACGCCTACCAAACCTGCACCACCGGGCGTCGGATGCATTCGGTGACAGTAGCGGCGGCGGCAGCTTTGCCAACTTTGCCGACTTCGACAATAAGAATCTCAAACCCGTTACCTCCCAAACACTGCAACAAGCGTCGCCATCATCGTTCGCCTCAAGCGGGACCGCATTCGGTAGCAATCGT]

[+] EMBL BM597330             [CCGGTGGAGAACGCGAACAAGCGCGATCCGTTCGGCGACAACCGATCGAACGGGTTCGGTGCGGGCGAGCCTGCCGAGACGGGCTTCGGTGACGATTTCAAGTCGTCGAACGGTTTCGCCACCCAGTTCGATGTCGGGTCGAACGGCGGATTTCACGGCGGTACTGCGGCGGCGGGCGGCTTTGGGGAAGACGGGTTCGGTGCGTTTGGGGCGAAAGCGCCGTCGCACGCCATCGGTGGGGGAGCGGCGGATCCGTTCGGATCGGGCGCTGCCGCCGATCCGTTCGGTGATCGGAAAGGTAGCGGCAGTGTAGCAGCAGAGCCCGCCAAAGATGAGTTCGGATGCGATCCGTTTGCCATACTACATGCGCCGACCACTGCCGGTCAAGCACTGTCGCCTAGTCCCAGCAAATCCGTTGCCCCGCCACGTCCGGAATCGCCCAGCCCGGCACTGCCCGCCGAAGAAGGCAAAGCAACCACCACCGCGTCCCGCTCCACCACGGACCAATGCAGGGCCCTACGCCTACCAAACCTGCACCACCGGGCGTCGGATGCATTCGGTGACAGTAGCGGCGGCGGCAGCTTTGCCAACTTTGCCGACTTCGACAATAAGAATCTCAAACCCGTTACCTCCCAAACACTGCAACAAGCGTCGCCATCATCGTTCGCCTCAAGCGGGACCGCATTCGGTAGCAATCGT]




>consensus_2373#0
CCGGTGGAGAACGCGAACAAGCGCGATCCGTTCGGCGACAACCGATCGAACGGGTTCGGT
GCGGGCGAGCCTGCCGAGACGGGCTTCGGTGACGATTTCAAGTCGTCGAACGGTTTCGCC
ACCCAGTTCGATGTCGGGTCGAACGGCGGATTTCACGGCGGTACTGCGGCGGCGGGCGGC
TTTGGGGAAGACGGGTTCGGTGCGTTTGGGGCGAAAGCGCCGTCGCACGCCATCGGTGGG
GGAGCGGCGGATCCGTTCGGATCGGGCGCTGCCGCCGATCCGTTCGGTGATCGGAAAGGT
AGCGGCAGTGTAGCAGCAGAGCCCGCCAAAGATGAGTTCGGATGCGATCCGTTTGCCATA
CTACATGCGCCGACCACTGCCGGTCAAGCACTGTCGCCTAGTCCCAGCAAATCCGTTGCC
CCGCCACGTCCGGAATCGCCCAGCCCGGCACTGCCCGCCGAAGAAGGCAAAGCAACCACC
ACCGCGTCCCGCTCCACCACGGACCAATGCAGGGCCCTACGCCTACCAAACCTGCACCAC
CGGGCGTCGGATGCATTCGGTGACAGTAGCGGCGGCGGCAGCTTTGCCAACTTTGCCGAC
TTCGACAATAAGAATCTCAAACCCGTTACCTCCCAAACACTGCAACAAGCGTCGCCATCA
TCGTTCGCCTCAAGCGGGACCGCATTCGGTAGCAATCGT

consensusID : consensus_2373#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [ATCGCCCAGCCCGGCACTGCCGCCGAATAAGGCAAAGCAACCACCACCGCGTCCCGCTCCACCACGACCAATGCAGGGCCCTACGCCTACCAAACCTGCACCACCGGCGTCGGATGCATTCGGTGACAGTAGCGGCGGCGGCAGCTTTGCCAACTTTGCCGACTTCGACAATAAGTGAATATCATCCGAGTAATAGTAATACTAATAGAGACTAACAATTAACCGCGAAAGCTACTACTGATGGGCGGAGGCAAAGAAAGCGAAACTCGTAGTAGTACTCCCCCTTGGGTCGCGCGCTTGTGTGTGTATCGAGCTAATACTTGAATGCACCACACGTTTGCACACGAGCGCGCGCGCTCCATCTCCAAAATGCACAGCAACCCACTGCAAAACACTCGAAATCATAGTGAAATAGCCATTGAAAGCGTAAATTATAGTCGATTTAGGTGATGCAATAGTGCAACAGTGTTCTTCACTATCAATTACTGAGCGGCACGCTGCGAGTGCAGCAACACACACAAAAAGTATAAGAGGCTCTCTATATTTTGAGTTGAACGTATCTGTTA]

[+] EMBL BM620485             [ATCGCCCAGCCCGGCACTGCCGCCGAATAAGGCAAAGCAACCACCACCGCGTCCCGCTCCACCACGACCAATGCAGGGCCCTACGCCTACCAAACCTGCACCACCGGCGTCGGATGCATTCGGTGACAGTAGCGGCGGCGGCAGCTTTGCCAACTTTGCCGACTTCGACAATAAGTGAATATCATCCGAGTAATAGTAATACTAATAGAGACTAACAATTAACCGCGAAAGCTACTACTGATGGGCGGAGGCAAAGAAAGCGAAACTCGTAGTAGTACTCCCCCTTGGGTCGCGCGCTTGTGTGTGTATCGAGCTAATACTTGAATGCACCACACGTTTGCACACGAGCGCGCGCGCTCCATCTCCAAAATGCACAGCAACCCACTGCAAAACACTCGAAATCATAGTGAAATAGCCATTGAAAGCGTAAATTATAGTCGATTTAGGTGATGCAATAGTGCAACAGTGTTCTTCACTATCAATTACTGAGCGGCACGCTGCGAGTGCAGCAACACACACAAAAAGTATAAGAGGCTCTCTATATTTTGAGTTGAACGTATCTGTTA]




>consensus_2373#1
ATCGCCCAGCCCGGCACTGCCGCCGAATAAGGCAAAGCAACCACCACCGCGTCCCGCTCC
ACCACGACCAATGCAGGGCCCTACGCCTACCAAACCTGCACCACCGGCGTCGGATGCATT
CGGTGACAGTAGCGGCGGCGGCAGCTTTGCCAACTTTGCCGACTTCGACAATAAGTGAAT
ATCATCCGAGTAATAGTAATACTAATAGAGACTAACAATTAACCGCGAAAGCTACTACTG
ATGGGCGGAGGCAAAGAAAGCGAAACTCGTAGTAGTACTCCCCCTTGGGTCGCGCGCTTG
TGTGTGTATCGAGCTAATACTTGAATGCACCACACGTTTGCACACGAGCGCGCGCGCTCC
ATCTCCAAAATGCACAGCAACCCACTGCAAAACACTCGAAATCATAGTGAAATAGCCATT
GAAAGCGTAAATTATAGTCGATTTAGGTGATGCAATAGTGCAACAGTGTTCTTCACTATC
AATTACTGAGCGGCACGCTGCGAGTGCAGCAACACACACAAAAAGTATAAGAGGCTCTCT
ATATTTTGAGTTGAACGTATCTGTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2373#0      CCGGTGGAGAACGCGAACAAGCGCGATCCGTTCGGCGACAACCGATCGAACGGGTTCGGT 60
consensus_2373#1      ---------------------ATCGCCCAGCCCGGC-ACTGCCG-CCGAATAAGG-CAAA 36
                                             **  * *  **** **  ***  ****   *  *   

consensus_2373#0      GCGGGCGAGCCTGCCGAGACGGGCTTCG--GTGACGATTTCAAGTCGTCGAACGGTTTCG 118
consensus_2373#1      GCAACCA---CCACCGCGTCCCGCTCCACCACGACCAATGCAGG--GCCCTACGCCTACC 91
                      **   *    *  *** * *  *** *     *** * * ** *  * *  ***  * * 

consensus_2373#0      CCACCCAGTTCGATGTCGGGTCGAACGGCGGATTTCACGGCGGTACTGCGGCGGCGGGCG 178
consensus_2373#1      AAACCTGCACCACCGGCG--TCGGATGC---ATTCGGTGACAGTA--GCGGCGGCGG-CA 143
                        ***     *   * **  *** * *    ***    * * ***  ********** * 

consensus_2373#0      GCTTTGGGGAAGACGGGTTCGGTGCGTTTGGGGCGAAAGCGCCGTCGCACGCCATCGGTG 238
consensus_2373#1      GCTTTGC------CAACTTTGCCGACTTCGACAATAAGTGAATATCATCCG--AGTAATA 195
                      ******       *   ** *  *  ** *     **       **   **  *    * 

consensus_2373#0      GGGGAGCGGCGGATCCGTTCGGATCGGGCGCTGCCGCCGAT-CCGTTCGGTGATCGGAAA 297
consensus_2373#1      GTAATACTAATAGAGACTAACAATTAACCGCGAAAGCTACTACTGATGGGCGGAGGCAAA 255
                      *     *          *    **    ***    **   * * * * ** *   * ***

consensus_2373#0      GGTAGCGGCAGT-GTAGCAGCAGAGCCCGCCAAAG-ATGAGTTCGGATGCG-ATCCGTTT 354
consensus_2373#1      GAAAGCGAAACTCGTAGTAGTACTCCCCCTTGGGTCGCGCGCTTGTGTGTGTATCGAGCT 315
                      *  ****  * * **** ** *   ***          * * * *  ** * ***    *

consensus_2373#0      GCCATACTACATGCGCCGACCACTGCCGGTCAAGCACTGTCGCCTAGTCCCAGCAAATCC 414
consensus_2373#1      AATAC-TTGAATGCACCACACGTTTGCACACGAGCGCGCGCGCTCCATCTCCA-AAATGC 373
                         *   *  **** **   *  *  *   * *** *   ***    ** *   **** *

consensus_2373#0      GTTGCCCCGCCACGTCCGGAATCGCCCAGCCCGGCACTGCCCGCCGAAGAAGGCAAAGCA 474
consensus_2373#1      ACAGCAAC-CCACTGCAAAACACTCGAAATCATAGTGAAATAGCCATTGAAAGCGTA--A 430
                         **  * ****  *   *  * *  *  *           ***   *** **  *  *

consensus_2373#0      ACCACCACCGCGTCCCGCTCCACCACGGACCAATGCAGGGCCCTACGCCTACCAAACCTG 534
consensus_2373#1      ATTATAGTCGATTTAGGTGATGCAATAGTGCAA--CAGTGTTCTTCAC-TATCAATTACT 487
                      *  *    **  *   *     * *  *  ***  *** *  ** * * ** ***     

consensus_2373#0      CACCACCGGGCGTCGGATGCATTCGGTGACAGTAGCGGCGGCGGCAGCTTTGCCAACTTT 594
consensus_2373#1      GAGCGGCACGCTGCGAGTGCAGCAACACACACAAAAAGTATAAGAGGCTCTCTATATTTT 547
                       * *  *  **  **  ****       ***  *   *     *  *** *    * ***

consensus_2373#0      G--CCGACTTCGACAATAAGAATCTCAAACCCGTTACCTCCCAAACACTGCAACAAGCGT 652
consensus_2373#1      GAGTTGAACGTATCTGTTA----------------------------------------- 566
                      *    **      *  * *                                         

consensus_2373#0      CGCCATCATCGTTCGCCTCAAGCGGGACCGCATTCGGTAGCAATCGT 699
consensus_2373#1      -----------------------------------------------