These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2375#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [CCGCACCAATGGCAGCAGTCGGGTGTCGGGTGTATTAGGCAGTAGCATTGTGACGACCGCCACGACGAGCTCGTCCGTAGTTAGCTCAATTGAAAGCACTAGCAACGATAATTACGAAAGCAATAATAGCGCCGGCGAAGAGAGCGATGTGGCAGAGGTGGAGCGCGTGACGCAGAAGCTGCAGTCCACCGGGCTGCTGGTGGAGGCGACACGACGCGACGAACGACGGTCCACCCCGCTGGTGACGGTGCAGCCGATGGAGAGCAGAATGCAGCTGGAACAGAGCATGGAGATGGATGAGCGTGGAGTGAAGCACCGTGAAAGCAGAATCAGAAATGAGAAGTAAAACTTACAAAACACAAAAGTTATTAACAAAAAAAACAAAACGTTGATGAAATGACCCACCTATCTCTACATGAATAATGTATTCAATACAAAATGAAAAAAGCGGGAAAAGCGGAAAGCAAAGGGATGACAGAGGAACACAACTATTTTTGCACAGATAGTATTTACATATTCAATCGAGTTTTGGTTTGTGTTGTACCTTTGGATCAAAAAAGAAACTAGATACACGTACATACATACACACCCACATATGAAAATTTTT] [+] EMBL BM635754 [CCGCACCAATGGCAGCAGTCGGGTGTCGGGTGTATTAGGCAGTAGCATTGTGACGACCGCCACGACGAGCTCGTCCGTAGTTAGCTCAATTGAAAGCACTAGCAACGATAATTACGAAAGCAATAATAGCGCCGGCGAAGAGAGCGATGTGGCAGAGGTGGAGCGCGTGACGCAGAAGCTGCAGTCCACCGGGCTGCTGGTGGAGGCGACACGACGCGACGAACGACGGTCCACCCCGCTGGTGACGGTGCAGCCGATGGAGAGCAGAATGCAGCTGGAACAGAGCATGGAGATGGATGAGCGTGGAGTGAAGCACCGTGAAAGCAGAATCAGAAATGAGAAGTAAAACTTACAAAACACAAAAGTTATTAACAAAAAAAACAAAACGTTGATGAAATGACCCACCTATCTCTACATGAATAATGTATTCAATACAAAATGAAAAAAGCGGGAAAAGCGGAAAGCAAAGGGATGACAGAGGAACACAACTATTTTTGCACAGATAGTATTTACATATTCAATCGAGTTTTGGTTTGTGTTGTACCTTTGGATCAAAAAAGAAACTAGATACACGTACATACATACACACCCACATATGAAAATTTTT] consensusID : consensus_2375#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [CCGAGGTTACGCACGACGAGCTCGTCGTAGTTAGCTCAATTGAAAGCACTACAACGATATTACGAAAGCAATAATAGCGCCGGCGAAGAGAGCGATGTGGCAGAGGTGGAGCGCGTGACGCAGAAGCTGCAGTCCACCGGGCTGCTGGTGGAGGCGACACGACGCGAAGAACGACGGTCCACCCCGCTGGTGACGGTGCAGCCGATGGAGAGCAGAATGCAGCTGCAGCAAGAGCAGGAGCAGGAGGAGCAGGAGGAGAAACAGGCAAAACAGCAAGAGCAGTGCCAGGAAGAACGTCCAAAGGTGAACGTCATAGAGCGGCGAAGGTTGTTCGAACAGTTGCAGCAAATGGCCCACACGACGACGCCAGCGGTGGC] [+] EMBL AL929656 [CCGAGGTTACGCACGACGAGCTCGTCGTAGTTAGCTCAATTGAAAGCACTACAACGATATTACGAAAGCAATAATAGCGCCGGCGAAGAGAGCGATGTGGCAGAGGTGGAGCGCGTGACGCAGAAGCTGCAGTCCACCGGGCTGCTGGTGGAGGCGACACGACGCGAAGAACGACGGTCCACCCCGCTGGTGACGGTGCAGCCGATGGAGAGCAGAATGCAGCTGCAGCAAGAGCAGGAGCAGGAGGAGCAGGAGGAGAAACAGGCAAAACAGCAAGAGCAGTGCCAGGAAGAACGTCCAAAGGTGAACGTCATAGAGCGGCGAAGGTTGTTCGAACAGTTGCAGCAAATGGCCCACACGACGACGCCAGCGGTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2375#0 CCGCACCAATGGCAGCAGTCGGGTGTCGGGTGTATTAGGCAGTAGCATTGTGACGACCGC 60 consensus_2375#1 -------------------------------------------------CCGAGGTTACG 11 ** * consensus_2375#0 CACGACGAGCTCGTCCGTAGTTAGCTCAATTGAAAGCACTAGCAACGATAATTACGAAAG 120 consensus_2375#1 CACGACGAGCTCGTC-GTAGTTAGCTCAATTGAAAGCACTA-CAACGATA-TTACGAAAG 68 *************** ************************* ******** ********* consensus_2375#0 CAATAATAGCGCCGGCGAAGAGAGCGATGTGGCAGAGGTGGAGCGCGTGACGCAGAAGCT 180 consensus_2375#1 CAATAATAGCGCCGGCGAAGAGAGCGATGTGGCAGAGGTGGAGCGCGTGACGCAGAAGCT 128 ************************************************************ consensus_2375#0 GCAGTCCACCGGGCTGCTGGTGGAGGCGACACGACGCGACGAACGACGGTCCACCCCGCT 240 consensus_2375#1 GCAGTCCACCGGGCTGCTGGTGGAGGCGACACGACGCGAAGAACGACGGTCCACCCCGCT 188 *************************************** ******************** consensus_2375#0 GGTGACGGTGCAGCCGATGGAGAGCAGAATGCAGCTGGAACAGAGCATGGAGATGGATGA 300 consensus_2375#1 GGTGACGGTGCAGCCGATGGAGAGCAGAATGCAGCTGCAGCAAGAGCAGGAGCAGGAGGA 248 ************************************* * ** **** *** ** consensus_2375#0 GCGTGGAGTGAAGCACCGTGAAAGCAGAATCAGAAATGAGAAGTAAAACTTACAAAACAC 360 consensus_2375#1 GCAGGAGGAGAAACA--GGCAAAACAGCAAGAGCAGTGCCAGGAAGAACGTCCAAAG-GT 305 ** * * *** ** * *** *** * ** * ** * * * *** * **** consensus_2375#0 AAAAGTTATTAACAAAAAAAA------CAAAACGTTGATG-AAATGACCCACCTATCTCT 413 consensus_2375#1 GAACGTCATAGAGCGGCGAAGGTTGTTCGAACAGTTGCAGCAAATGGCCCAC--ACGACG 363 ** ** ** * ** * ** **** * ***** ***** * * consensus_2375#0 ACATGAATAATGTATTCAATACAAAATGAAAAAAGCGGGAAAAGCGGAAAGCAAAGGGAT 473 consensus_2375#1 ACGCCAGCGGTGGC---------------------------------------------- 377 ** * ** consensus_2375#0 GACAGAGGAACACAACTATTTTTGCACAGATAGTATTTACATATTCAATCGAGTTTTGGT 533 consensus_2375#1 ------------------------------------------------------------ consensus_2375#0 TTGTGTTGTACCTTTGGATCAAAAAAGAAACTAGATACACGTACATACATACACACCCAC 593 consensus_2375#1 ------------------------------------------------------------ consensus_2375#0 ATATGAAAATTTTT 607 consensus_2375#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||