cluster # 2377

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Anopheles gambiae
cluster # 2377 cluster # 2377 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2377#0 length = 710 sequences # 1

consensus_2377#1 length = 471 sequences # 1

consensusID : consensus_2377#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 710
fasta sequence

                              [GTGACGTTTGTTGAGCTCATTCACTTAGAGTGCCTTTTTTGCCTGTTTTTTCACTACTGAAATTAAACTATCGTCATGTTGTTGATAATAGTGTGTCAAGTATACACACACAATAATAGTAGTAGCATCGAATCACATACAAATCAATCACTCAATTTCAACAACCCCTCACTCAGTAGTAAGGTAGAAGAAGCTAAAAGGGGGGAGGGATGTTTAGCTTAAAAGCGCGCGAGTTATGGAATGCAATACATAGAGAACACGCGGACAGACGCGGACACGCCGGCATACTTTCAAACTCTTCTCTTCACTCTTTTCCCGCTCCTTGATATCAATAAATTGTAGAACTAAATAGGGAAGGCGAGCGTGTGTGAGCGTATGACACACAAGGCACACAGTGTGTGTGTGTGTGTGTTCGCAGATACTTAATGAAGTTAAACTATATGCTCTGATGCGTGCGTGCGTGCGTGTGTGTGTATGTAATAATTAGAGTACGGCTAATAGAGTGTAATGGCTATGAGTTGTAGTTGCGTTGATGAGTATGCCAGCACAAGATACTTGTAATTGCTCGTTCCTAAAGCAAAGCAAAGGCAAAGGCTCAATCCACAATAGAGGCAGAAAGAGAGAGGGAGAGAGAGAGAGAGAGAGTATGGAGCGTGCTTAGAGACAGGATAAAAAATGACAGAAATGGACGAAAGGATCGTGTGTGTTTG]

[+] EMBL BX607086             [GTGACGTTTGTTGAGCTCATTCACTTAGAGTGCCTTTTTTGCCTGTTTTTTCACTACTGAAATTAAACTATCGTCATGTTGTTGATAATAGTGTGTCAAGTATACACACACAATAATAGTAGTAGCATCGAATCACATACAAATCAATCACTCAATTTCAACAACCCCTCACTCAGTAGTAAGGTAGAAGAAGCTAAAAGGGGGGAGGGATGTTTAGCTTAAAAGCGCGCGAGTTATGGAATGCAATACATAGAGAACACGCGGACAGACGCGGACACGCCGGCATACTTTCAAACTCTTCTCTTCACTCTTTTCCCGCTCCTTGATATCAATAAATTGTAGAACTAAATAGGGAAGGCGAGCGTGTGTGAGCGTATGACACACAAGGCACACAGTGTGTGTGTGTGTGTGTTCGCAGATACTTAATGAAGTTAAACTATATGCTCTGATGCGTGCGTGCGTGCGTGTGTGTGTATGTAATAATTAGAGTACGGCTAATAGAGTGTAATGGCTATGAGTTGTAGTTGCGTTGATGAGTATGCCAGCACAAGATACTTGTAATTGCTCGTTCCTAAAGCAAAGCAAAGGCAAAGGCTCAATCCACAATAGAGGCAGAAAGAGAGAGGGAGAGAGAGAGAGAGAGAGTATGGAGCGTGCTTAGAGACAGGATAAAAAATGACAGAAATGGACGAAAGGATCGTGTGTGTTTG]




>consensus_2377#0
GTGACGTTTGTTGAGCTCATTCACTTAGAGTGCCTTTTTTGCCTGTTTTTTCACTACTGA
AATTAAACTATCGTCATGTTGTTGATAATAGTGTGTCAAGTATACACACACAATAATAGT
AGTAGCATCGAATCACATACAAATCAATCACTCAATTTCAACAACCCCTCACTCAGTAGT
AAGGTAGAAGAAGCTAAAAGGGGGGAGGGATGTTTAGCTTAAAAGCGCGCGAGTTATGGA
ATGCAATACATAGAGAACACGCGGACAGACGCGGACACGCCGGCATACTTTCAAACTCTT
CTCTTCACTCTTTTCCCGCTCCTTGATATCAATAAATTGTAGAACTAAATAGGGAAGGCG
AGCGTGTGTGAGCGTATGACACACAAGGCACACAGTGTGTGTGTGTGTGTGTTCGCAGAT
ACTTAATGAAGTTAAACTATATGCTCTGATGCGTGCGTGCGTGCGTGTGTGTGTATGTAA
TAATTAGAGTACGGCTAATAGAGTGTAATGGCTATGAGTTGTAGTTGCGTTGATGAGTAT
GCCAGCACAAGATACTTGTAATTGCTCGTTCCTAAAGCAAAGCAAAGGCAAAGGCTCAAT
CCACAATAGAGGCAGAAAGAGAGAGGGAGAGAGAGAGAGAGAGAGTATGGAGCGTGCTTA
GAGACAGGATAAAAAATGACAGAAATGGACGAAAGGATCGTGTGTGTTTG

consensusID : consensus_2377#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 471
fasta sequence

                              [TCCCGAGGTTCTTTTTTGCCTGTTTTTTCACTACTGAAATTAACTATCGTCATGTTGTTGATAATAGTGTGTCAAGTACACACACAATAGTAGTAGTAGCATCGAATCACATACAAATCAATCACTCAATTTCAACAATCCCCCACTCAGTAGTAAGGTAGAAGAAGCTAAAAGAAGAGGGGGATGTTTAGCTTAGAAGCGCGCGAGTTATGGAATGCAATACATAGAGAACACGCGGACAGACGCGGACACGCCGGCATACTTTCAAACTCTTCTCTTCACTCTTTTTCCGCTCCTTGATATCAATAAATTGTAGAACTAAATAGGGAAGGCGAGCGTGTGTGAGCGTATGACACACAAGGGCATACAATGTGTGTATGTGTGTTTGCAGATACTTAATGAAGTTAAACTATATGCTCTGATGCGTGCGTGCGTGCGTGTGTGTGTGTATGTAATAATTAGAGTACGGTA]

[+] EMBL AL929667             [TCCCGAGGTTCTTTTTTGCCTGTTTTTTCACTACTGAAATTAACTATCGTCATGTTGTTGATAATAGTGTGTCAAGTACACACACAATAGTAGTAGTAGCATCGAATCACATACAAATCAATCACTCAATTTCAACAATCCCCCACTCAGTAGTAAGGTAGAAGAAGCTAAAAGAAGAGGGGGATGTTTAGCTTAGAAGCGCGCGAGTTATGGAATGCAATACATAGAGAACACGCGGACAGACGCGGACACGCCGGCATACTTTCAAACTCTTCTCTTCACTCTTTTTCCGCTCCTTGATATCAATAAATTGTAGAACTAAATAGGGAAGGCGAGCGTGTGTGAGCGTATGACACACAAGGGCATACAATGTGTGTATGTGTGTTTGCAGATACTTAATGAAGTTAAACTATATGCTCTGATGCGTGCGTGCGTGCGTGTGTGTGTGTATGTAATAATTAGAGTACGGTA]




>consensus_2377#1
TCCCGAGGTTCTTTTTTGCCTGTTTTTTCACTACTGAAATTAACTATCGTCATGTTGTTG
ATAATAGTGTGTCAAGTACACACACAATAGTAGTAGTAGCATCGAATCACATACAAATCA
ATCACTCAATTTCAACAATCCCCCACTCAGTAGTAAGGTAGAAGAAGCTAAAAGAAGAGG
GGGATGTTTAGCTTAGAAGCGCGCGAGTTATGGAATGCAATACATAGAGAACACGCGGAC
AGACGCGGACACGCCGGCATACTTTCAAACTCTTCTCTTCACTCTTTTTCCGCTCCTTGA
TATCAATAAATTGTAGAACTAAATAGGGAAGGCGAGCGTGTGTGAGCGTATGACACACAA
GGGCATACAATGTGTGTATGTGTGTTTGCAGATACTTAATGAAGTTAAACTATATGCTCT
GATGCGTGCGTGCGTGCGTGTGTGTGTGTATGTAATAATTAGAGTACGGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2377#0      GTGACGTTTGTTGAGCTCATTCACTTAGAGTGCCTTTTTTGCCTGTTTTTTCACTACTGA 60
consensus_2377#1      -----------------------TCCCGAGGTTCTTTTTTGCCTGTTTTTTCACTACTGA 37
                                                 ***   ***************************

consensus_2377#0      AATTAAACTATCGTCATGTTGTTGATAATAGTGTGTCAAGTATACACACACAATAATAGT 120
consensus_2377#1      AATTAA-CTATCGTCATGTTGTTGATAATAGTGTGTCAAGTA--CACACACAATAGTAGT 94
                      ****** ***********************************  *********** ****

consensus_2377#0      AGTAGCATCGAATCACATACAAATCAATCACTCAATTTCAACAACCCCTCACTCAGTAGT 180
consensus_2377#1      AGTAGCATCGAATCACATACAAATCAATCACTCAATTTCAACAATCCCCCACTCAGTAGT 154
                      ******************************************** *** ***********

consensus_2377#0      AAGGTAGAAGAAGCTAAAAGGGGGGAGGGATGTTTAGCTTAAAAGCGCGCGAGTTATGGA 240
consensus_2377#1      AAGGTAGAAGAAGCTAAAAGAAGAGGGGGATGTTTAGCTTAGAAGCGCGCGAGTTATGGA 214
                      ********************  * * *************** ******************

consensus_2377#0      ATGCAATACATAGAGAACACGCGGACAGACGCGGACACGCCGGCATACTTTCAAACTCTT 300
consensus_2377#1      ATGCAATACATAGAGAACACGCGGACAGACGCGGACACGCCGGCATACTTTCAAACTCTT 274
                      ************************************************************

consensus_2377#0      CTCTTCACTCTTTTCCCGCTCCTTGATATCAATAAATTGTAGAACTAAATAGGGAAGGCG 360
consensus_2377#1      CTCTTCACTCTTTTTCCGCTCCTTGATATCAATAAATTGTAGAACTAAATAGGGAAGGCG 334
                      ************** *********************************************

consensus_2377#0      AGCGTGTGTGAGCGTATGACACACAAGGCACACAGTGTGTGTGTGTGTGTGTTCGCAGAT 420
consensus_2377#1      AGCGTGTGTGAGCGTATGACACACAAGG-GCATACAATGTGTGTATGTGTGTTTGCAGAT 393
                      ****************************  ** *   ******* ******** ******

consensus_2377#0      ACTTAATGAAGTTAAACTATATGCTCTGATGCGTGCGTGCGTGCGTGTGTGTGT--ATGT 478
consensus_2377#1      ACTTAATGAAGTTAAACTATATGCTCTGATGCGTGCGTGCGTGCGTGTGTGTGTGTATGT 453
                      ******************************************************  ****

consensus_2377#0      AATAATTAGAGTACGGCTAATAGAGTGTAATGGCTATGAGTTGTAGTTGCGTTGATGAGT 538
consensus_2377#1      AATAATTAGAGTACGGTA------------------------------------------ 471
                      ****************                                            

consensus_2377#0      ATGCCAGCACAAGATACTTGTAATTGCTCGTTCCTAAAGCAAAGCAAAGGCAAAGGCTCA 598
consensus_2377#1      ------------------------------------------------------------
                                                                                  

consensus_2377#0      ATCCACAATAGAGGCAGAAAGAGAGAGGGAGAGAGAGAGAGAGAGAGTATGGAGCGTGCT 658
consensus_2377#1      ------------------------------------------------------------
                                                                                  

consensus_2377#0      TAGAGACAGGATAAAAAATGACAGAAATGGACGAAAGGATCGTGTGTGTTTG 710
consensus_2377#1      ----------------------------------------------------