cluster # 238

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Anopheles gambiae
cluster # 238 cluster # 238 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_238#0 length = 747 sequences # 1

consensus_238#1 length = 178 sequences # 1

consensusID : consensus_238#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 747
fasta sequence

                              [CCCCGAGGTAATGTCGGAAGTGTTGCGCGACTTTCCCCGAGCTGTCGTGTCGAGATTGACGGTGTGACCGAGTCGATCATGAAGCGTACCGCGCTGGTGGCCAACACCTCGAACATGCCTGTCGCTGCTCGTGAAGCTTCCATCTACACCGGTATTACGCTGTCGGAGTACTTCCGCGACATGGGCTACAACGTGTCGATGATGGGCGATTCCACTCCCGTTGGGCTGAGGCGCTGCGAGAAATCTCCGGCGTCTGGCGGAGATGCCGGCGATTCCGGCTACCCGGCTACCTGGGCGCCCGACTCGCCTCGTTCTACGAGCGCGCCGGTCGCGTCAAGTGTCTCGGCAATCCGGAGCGCGAAGGTTCCGTGTCGATCGTCGGTGCCGTCTCGCCGCCCGGTGGTGATTTCTCCGATCCCGTCACTTCCGGCACGCTCGGCATTGTGCAGGTGTACTGGGGCTTGGACAAGAAGCTGGGCCAGCGTAAAGCACTTCCCTCGATCACCTGGTTGATTTCGTACAGAAGTACATGCGCGCACTGGAAGATTCTACGACCACGAAACTTTCCCGGGCAGGTNTGGTGCCGAATGCGGTACCAAGGGGTGAAGGCAAATCCTTGCAGGGCAGGAAGGAGGGATCTTGGTCCGNAAATCGTGCCAGCTCGTCGGGGTTAGGGCGTCGCTGGGCCGAAGAACGGGACCNAGATCACGCTTCGAAGGTACGCCCAAGCTGTTNNNAGGACGAATT]

[+] EMBL AL929682             [CCCCGAGGTAATGTCGGAAGTGTTGCGCGACTTTCCCCGAGCTGTCGTGTCGAGATTGACGGTGTGACCGAGTCGATCATGAAGCGTACCGCGCTGGTGGCCAACACCTCGAACATGCCTGTCGCTGCTCGTGAAGCTTCCATCTACACCGGTATTACGCTGTCGGAGTACTTCCGCGACATGGGCTACAACGTGTCGATGATGGGCGATTCCACTCCCGTTGGGCTGAGGCGCTGCGAGAAATCTCCGGCGTCTGGCGGAGATGCCGGCGATTCCGGCTACCCGGCTACCTGGGCGCCCGACTCGCCTCGTTCTACGAGCGCGCCGGTCGCGTCAAGTGTCTCGGCAATCCGGAGCGCGAAGGTTCCGTGTCGATCGTCGGTGCCGTCTCGCCGCCCGGTGGTGATTTCTCCGATCCCGTCACTTCCGGCACGCTCGGCATTGTGCAGGTGTACTGGGGCTTGGACAAGAAGCTGGGCCAGCGTAAAGCACTTCCCTCGATCACCTGGTTGATTTCGTACAGAAGTACATGCGCGCACTGGAAGATTCTACGACCACGAAACTTTCCCGGGCAGGTNTGGTGCCGAATGCGGTACCAAGGGGTGAAGGCAAATCCTTGCAGGGCAGGAAGGAGGGATCTTGGTCCGNAAATCGTGCCAGCTCGTCGGGGTTAGGGCGTCGCTGGGCCGAAGAACGGGACCNAGATCACGCTTCGAAGGTACGCCCAAGCTGTTNNNAGGACGAATT]




>consensus_238#0
CCCCGAGGTAATGTCGGAAGTGTTGCGCGACTTTCCCCGAGCTGTCGTGTCGAGATTGAC
GGTGTGACCGAGTCGATCATGAAGCGTACCGCGCTGGTGGCCAACACCTCGAACATGCCT
GTCGCTGCTCGTGAAGCTTCCATCTACACCGGTATTACGCTGTCGGAGTACTTCCGCGAC
ATGGGCTACAACGTGTCGATGATGGGCGATTCCACTCCCGTTGGGCTGAGGCGCTGCGAG
AAATCTCCGGCGTCTGGCGGAGATGCCGGCGATTCCGGCTACCCGGCTACCTGGGCGCCC
GACTCGCCTCGTTCTACGAGCGCGCCGGTCGCGTCAAGTGTCTCGGCAATCCGGAGCGCG
AAGGTTCCGTGTCGATCGTCGGTGCCGTCTCGCCGCCCGGTGGTGATTTCTCCGATCCCG
TCACTTCCGGCACGCTCGGCATTGTGCAGGTGTACTGGGGCTTGGACAAGAAGCTGGGCC
AGCGTAAAGCACTTCCCTCGATCACCTGGTTGATTTCGTACAGAAGTACATGCGCGCACT
GGAAGATTCTACGACCACGAAACTTTCCCGGGCAGGTNTGGTGCCGAATGCGGTACCAAG
GGGTGAAGGCAAATCCTTGCAGGGCAGGAAGGAGGGATCTTGGTCCGNAAATCGTGCCAG
CTCGTCGGGGTTAGGGCGTCGCTGGGCCGAAGAACGGGACCNAGATCACGCTTCGAAGGT
ACGCCCAAGCTGTTNNNAGGACGAATT

consensusID : consensus_238#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 178
fasta sequence

                              [CCGCCCACGCGTCCGGAGCGTGGTAACGAGATGTCGGAAGTGTTGCGCGATTTCCCCGAGCTGTCGGTCGAGATTGACGGTGTGACCGAGTCGATCATGAAGCGTACCGCGCTGGTCGCCAACACCTCGAACATGCCTGTCGCTGCTCGTGAAGCTTCCATCTACACCGGTATTACGC]

[+] EMBL BM623401             [CCGCCCACGCGTCCGGAGCGTGGTAACGAGATGTCGGAAGTGTTGCGCGATTTCCCCGAGCTGTCGGTCGAGATTGACGGTGTGACCGAGTCGATCATGAAGCGTACCGCGCTGGTCGCCAACACCTCGAACATGCCTGTCGCTGCTCGTGAAGCTTCCATCTACACCGGTATTACGC]




>consensus_238#1
CCGCCCACGCGTCCGGAGCGTGGTAACGAGATGTCGGAAGTGTTGCGCGATTTCCCCGAG
CTGTCGGTCGAGATTGACGGTGTGACCGAGTCGATCATGAAGCGTACCGCGCTGGTCGCC
AACACCTCGAACATGCCTGTCGCTGCTCGTGAAGCTTCCATCTACACCGGTATTACGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_238#0      --------------------CCCCGAGGTAATGTCGGAAGTGTTGCGCGACTTTCCCCGA 40
consensus_238#1      CCGCCCACGCGTCCGGAGCGTGGTAACGAGATGTCGGAAGTGTTGCGCGA-TTTCCCCGA 59
                                              * *  ******************** *********

consensus_238#0      GCTGTCGTGTCGAGATTGACGGTGTGACCGAGTCGATCATGAAGCGTACCGCGCTGGTGG 100
consensus_238#1      GCTGTCG-GTCGAGATTGACGGTGTGACCGAGTCGATCATGAAGCGTACCGCGCTGGTCG 118
                     ******* ************************************************** *

consensus_238#0      CCAACACCTCGAACATGCCTGTCGCTGCTCGTGAAGCTTCCATCTACACCGGTATTACGC 160
consensus_238#1      CCAACACCTCGAACATGCCTGTCGCTGCTCGTGAAGCTTCCATCTACACCGGTATTACGC 178
                     ************************************************************

consensus_238#0      TGTCGGAGTACTTCCGCGACATGGGCTACAACGTGTCGATGATGGGCGATTCCACTCCCG 220
consensus_238#1      ------------------------------------------------------------
                                                                                 

consensus_238#0      TTGGGCTGAGGCGCTGCGAGAAATCTCCGGCGTCTGGCGGAGATGCCGGCGATTCCGGCT 280
consensus_238#1      ------------------------------------------------------------
                                                                                 

consensus_238#0      ACCCGGCTACCTGGGCGCCCGACTCGCCTCGTTCTACGAGCGCGCCGGTCGCGTCAAGTG 340
consensus_238#1      ------------------------------------------------------------
                                                                                 

consensus_238#0      TCTCGGCAATCCGGAGCGCGAAGGTTCCGTGTCGATCGTCGGTGCCGTCTCGCCGCCCGG 400
consensus_238#1      ------------------------------------------------------------
                                                                                 

consensus_238#0      TGGTGATTTCTCCGATCCCGTCACTTCCGGCACGCTCGGCATTGTGCAGGTGTACTGGGG 460
consensus_238#1      ------------------------------------------------------------
                                                                                 

consensus_238#0      CTTGGACAAGAAGCTGGGCCAGCGTAAAGCACTTCCCTCGATCACCTGGTTGATTTCGTA 520
consensus_238#1      ------------------------------------------------------------
                                                                                 

consensus_238#0      CAGAAGTACATGCGCGCACTGGAAGATTCTACGACCACGAAACTTTCCCGGGCAGGTNTG 580
consensus_238#1      ------------------------------------------------------------
                                                                                 

consensus_238#0      GTGCCGAATGCGGTACCAAGGGGTGAAGGCAAATCCTTGCAGGGCAGGAAGGAGGGATCT 640
consensus_238#1      ------------------------------------------------------------
                                                                                 

consensus_238#0      TGGTCCGNAAATCGTGCCAGCTCGTCGGGGTTAGGGCGTCGCTGGGCCGAAGAACGGGAC 700
consensus_238#1      ------------------------------------------------------------
                                                                                 

consensus_238#0      CNAGATCACGCTTCGAAGGTACGCCCAAGCTGTTNNNAGGACGAATT 747
consensus_238#1      -----------------------------------------------