cluster # 2380

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Anopheles gambiae
cluster # 2380 cluster # 2380 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2380#0 length = 732 sequences # 1

consensus_2380#1 length = 437 sequences # 1

consensusID : consensus_2380#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 732
fasta sequence

                              [TTTGCGTTGCCAACCCATCAAATCATGCCCTAGCTGTACGATACACAAGGCACCGGAATGCGGTCATCTCAAACCAATTCCAAACTCCGATTGCAAATGTAAATAATCCATTAGCCGTTACAATTACAAAGCCCAAACACACACACACACACTCACTCACACATACGAACCGTAATGGAACGCGGCCTGCATCGACGCGCCATGCATCTTGCATGTTACCGAGCTCTTTGCATAGCAACCAGACAGATCACAATGGTACACCGCAGCCTACTATGCCAAAGACACCTGTTCCACCGACACACCGCTACCACATCTCATTAACCTGCTCTCTCACCTTNTGACCGTACCCGGGCAGTGGCCGGTGAAAACGGGAAGCCACCGGAAACACAATACAGTCTCCACAATGTAAATACAATAGGCTGTCCAGTGTAAAGGGCGCAAAACGGATGTAGGTCACGGCATATAGCGTCAAAGCGAAGAAAGATGTATGAAACAGTAGCTTGGAGGTGCATTGAGGTTCGAGGTACCGAGCGTAGCGTATAAGACATGCTTATCACTTAGCTGANAAACTCCCTCTTCCCAATCCAAAAGCAAAAGACCCCTTCACGNTGATTCGTANACAAAANGGCGAATNCAAACTGACATGGCTGGGTCTCTTANCGTTTAAAAGTGCTAANTGTNCTCATTTCGTCCCCCCAAACATCCATCCACCACACCTTCATGTTCGACGCC]

[+] EMBL AL931006             [TTTGCGTTGCCAACCCATCAAATCATGCCCTAGCTGTACGATACACAAGGCACCGGAATGCGGTCATCTCAAACCAATTCCAAACTCCGATTGCAAATGTAAATAATCCATTAGCCGTTACAATTACAAAGCCCAAACACACACACACACACTCACTCACACATACGAACCGTAATGGAACGCGGCCTGCATCGACGCGCCATGCATCTTGCATGTTACCGAGCTCTTTGCATAGCAACCAGACAGATCACAATGGTACACCGCAGCCTACTATGCCAAAGACACCTGTTCCACCGACACACCGCTACCACATCTCATTAACCTGCTCTCTCACCTTNTGACCGTACCCGGGCAGTGGCCGGTGAAAACGGGAAGCCACCGGAAACACAATACAGTCTCCACAATGTAAATACAATAGGCTGTCCAGTGTAAAGGGCGCAAAACGGATGTAGGTCACGGCATATAGCGTCAAAGCGAAGAAAGATGTATGAAACAGTAGCTTGGAGGTGCATTGAGGTTCGAGGTACCGAGCGTAGCGTATAAGACATGCTTATCACTTAGCTGANAAACTCCCTCTTCCCAATCCAAAAGCAAAAGACCCCTTCACGNTGATTCGTANACAAAANGGCGAATNCAAACTGACATGGCTGGGTCTCTTANCGTTTAAAAGTGCTAANTGTNCTCATTTCGTCCCCCCAAACATCCATCCACCACACCTTCATGTTCGACGCC]




>consensus_2380#0
TTTGCGTTGCCAACCCATCAAATCATGCCCTAGCTGTACGATACACAAGGCACCGGAATG
CGGTCATCTCAAACCAATTCCAAACTCCGATTGCAAATGTAAATAATCCATTAGCCGTTA
CAATTACAAAGCCCAAACACACACACACACACTCACTCACACATACGAACCGTAATGGAA
CGCGGCCTGCATCGACGCGCCATGCATCTTGCATGTTACCGAGCTCTTTGCATAGCAACC
AGACAGATCACAATGGTACACCGCAGCCTACTATGCCAAAGACACCTGTTCCACCGACAC
ACCGCTACCACATCTCATTAACCTGCTCTCTCACCTTNTGACCGTACCCGGGCAGTGGCC
GGTGAAAACGGGAAGCCACCGGAAACACAATACAGTCTCCACAATGTAAATACAATAGGC
TGTCCAGTGTAAAGGGCGCAAAACGGATGTAGGTCACGGCATATAGCGTCAAAGCGAAGA
AAGATGTATGAAACAGTAGCTTGGAGGTGCATTGAGGTTCGAGGTACCGAGCGTAGCGTA
TAAGACATGCTTATCACTTAGCTGANAAACTCCCTCTTCCCAATCCAAAAGCAAAAGACC
CCTTCACGNTGATTCGTANACAAAANGGCGAATNCAAACTGACATGGCTGGGTCTCTTAN
CGTTTAAAAGTGCTAANTGTNCTCATTTCGTCCCCCCAAACATCCATCCACCACACCTTC
ATGTTCGACGCC

consensusID : consensus_2380#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [ATCGCCCCGAGGTTAACGTTACAATTACAAAGCCCAAACACACATACACACTCTCACTCACACATACGAACCGTAATGGAACGCGGCCTGCATCGACGCGCCATGCATCTTGCATGTTACCGAGCTCTTTGCATAGCAAACCAGACAGATCACAAGGACACCGCAGCCTACTATGCCAAAGACACCTGTTCCACCGACACACCGCTACCACATCTCATTAACCTGCTCTCTCACCTTTGACCGTACCGCGGGCAGTGGCCGGTGAAAAGGGAAGCCACCGGAAACACAATACAGTCTCCACAATGTAAATACAATGGCTGTCCAGCTGTTCTGGGCGCAAACACGGCATGTACGGTCACGGCATTAGCGTCNAAGCGAAGAAACGATGTATGAANACAGCAGCTTGGACGGTGCATNTGAGGTTCNCAGGTACCGAG]

[+] EMBL AL929712             [ATCGCCCCGAGGTTAACGTTACAATTACAAAGCCCAAACACACATACACACTCTCACTCACACATACGAACCGTAATGGAACGCGGCCTGCATCGACGCGCCATGCATCTTGCATGTTACCGAGCTCTTTGCATAGCAAACCAGACAGATCACAAGGACACCGCAGCCTACTATGCCAAAGACACCTGTTCCACCGACACACCGCTACCACATCTCATTAACCTGCTCTCTCACCTTTGACCGTACCGCGGGCAGTGGCCGGTGAAAAGGGAAGCCACCGGAAACACAATACAGTCTCCACAATGTAAATACAATGGCTGTCCAGCTGTTCTGGGCGCAAACACGGCATGTACGGTCACGGCATTAGCGTCNAAGCGAAGAAACGATGTATGAANACAGCAGCTTGGACGGTGCATNTGAGGTTCNCAGGTACCGAG]




>consensus_2380#1
ATCGCCCCGAGGTTAACGTTACAATTACAAAGCCCAAACACACATACACACTCTCACTCA
CACATACGAACCGTAATGGAACGCGGCCTGCATCGACGCGCCATGCATCTTGCATGTTAC
CGAGCTCTTTGCATAGCAAACCAGACAGATCACAAGGACACCGCAGCCTACTATGCCAAA
GACACCTGTTCCACCGACACACCGCTACCACATCTCATTAACCTGCTCTCTCACCTTTGA
CCGTACCGCGGGCAGTGGCCGGTGAAAAGGGAAGCCACCGGAAACACAATACAGTCTCCA
CAATGTAAATACAATGGCTGTCCAGCTGTTCTGGGCGCAAACACGGCATGTACGGTCACG
GCATTAGCGTCNAAGCGAAGAAACGATGTATGAANACAGCAGCTTGGACGGTGCATNTGA
GGTTCNCAGGTACCGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2380#0      TTTGCGTTGCCAACCCATCAAATCATGCCCTAGCTGTACGATACACAAGGCACCGGAATG 60
consensus_2380#1      ------------------------------------------------------------
                                                                                  

consensus_2380#0      CGGTCATCTCAAACCAATTCCAAACTCCGATTGCAAATGTAAATAATCCATTAGCCGTTA 120
consensus_2380#1      --------------------------------------ATCGCCCCGAGGTTAAC-GTTA 21
                                                             *          *** * ****

consensus_2380#0      CAATTACAAAGCCCAAACACACACACACACACTCACTCACACATACGAACCGTAATGGAA 180
consensus_2380#1      CAATTACAAAGCCCAAACACACATACACACTCTCACTCACACATACGAACCGTAATGGAA 81
                      *********************** ****** *****************************

consensus_2380#0      CGCGGCCTGCATCGACGCGCCATGCATCTTGCATGTTACCGAGCTCTTTGCATAGCAA-C 239
consensus_2380#1      CGCGGCCTGCATCGACGCGCCATGCATCTTGCATGTTACCGAGCTCTTTGCATAGCAAAC 141
                      ********************************************************** *

consensus_2380#0      CAGACAGATCACAATGGTACACCGCAGCCTACTATGCCAAAGACACCTGTTCCACCGACA 299
consensus_2380#1      CAGACAGATCACAA--GGACACCGCAGCCTACTATGCCAAAGACACCTGTTCCACCGACA 199
                      **************  * ******************************************

consensus_2380#0      CACCGCTACCACATCTCATTAACCTGCTCTCTCACCTTNTGACCGTACC-CGGGCAGTGG 358
consensus_2380#1      CACCGCTACCACATCTCATTAACCTGCTCTCTCACCTTT-GACCGTACCGCGGGCAGTGG 258
                      **************************************  ********* **********

consensus_2380#0      CCGGTGAAAACGGGAAGCCACCGGAAACACAATACAGTCTCCACAATGTAAATACAATAG 418
consensus_2380#1      CCGGTGAAAA-GGGAAGCCACCGGAAACACAATACAGTCTCCACAATGTAAATACAAT-G 316
                      ********** *********************************************** *

consensus_2380#0      GCTGTCCAG-TGTAAAGGGCGCAAA-ACGG-ATGTA-GGTCACGGCATATAGCGTCAAAG 474
consensus_2380#1      GCTGTCCAGCTGTTCTGGGCGCAAACACGGCATGTACGGTCACGGCAT-TAGCGTCNAAG 375
                      ********* ***   ********* **** ***** *********** ******* ***

consensus_2380#0      CGAAGAAA-GATGTATGAAA-CAGTAGCTTGGA-GGTGCATT-GAGGTTCG-AGGTACCG 529
consensus_2380#1      CGAAGAAACGATGTATGAANACAGCAGCTTGGACGGTGCATNTGAGGTTCNCAGGTACCG 435
                      ******** **********  *** ******** *******  *******  ********

consensus_2380#0      AGCGTAGCGTATAAGACATGCTTATCACTTAGCTGANAAACTCCCTCTTCCCAATCCAAA 589
consensus_2380#1      AG---------------------------------------------------------- 437
                      **                                                          

consensus_2380#0      AGCAAAAGACCCCTTCACGNTGATTCGTANACAAAANGGCGAATNCAAACTGACATGGCT 649
consensus_2380#1      ------------------------------------------------------------
                                                                                  

consensus_2380#0      GGGTCTCTTANCGTTTAAAAGTGCTAANTGTNCTCATTTCGTCCCCCCAAACATCCATCC 709
consensus_2380#1      ------------------------------------------------------------
                                                                                  

consensus_2380#0      ACCACACCTTCATGTTCGACGCC 732
consensus_2380#1      -----------------------