These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [CCGCGGACGCGTGGGTTCTACTGCTGCTCCACAAACCACAAACCGACGGGAATAAGCTCTGTTTCGATGCTCTTTCTTAATTCCCACCCCACTATAATCTGAAATCCTGTGTGAATCGGTGGAAAATTAACGTAAATGTTATGAAAGAGGAGAACTGAATGCGATCGAACAGGATGGACACCTGTGCTGATCATTACAACTACTGCCGAGCAAAAGCTACTAAATGCTGCCAAATGAATCTGACAGCTGTCATCATCATTTTCACACTAAGAGAGACTATCCCTATCGACTGATCGTTCAGTTGTTGCTCACATTGACTGATCACGCTAATAGAATACATTCACCTCAGAACTAAGGATCGCCCGATTCTTACCAAACACTGCCAGCAATAGTATCTCAACTCATCTCAGAATCTCATCTCAACCCCGTACACTGCTCATAGTTTATACCGACTCTCGTACTGTCCACACCAAGGGGGGGGAATGAAAGAGGCATGGAAATAAACGGCCGACAATCGCGATCGCGTGTTATAGGCTTGTCGGCACTCTAGGAATAGTTTTCAGTCATAGCAGGTACTCCTTGTCTTAAGCGTACGTACGTACCTACTACTGGTTGTCTTCTAAATCTTCCTGTAAATATGAGACATTTGAAAAAGG] [+] EMBL BM638165 [CCGCGGACGCGTGGGTTCTACTGCTGCTCCACAAACCACAAACCGACGGGAATAAGCTCTGTTTCGATGCTCTTTCTTAATTCCCACCCCACTATAATCTGAAATCCTGTGTGAATCGGTGGAAAATTAACGTAAATGTTATGAAAGAGGAGAACTGAATGCGATCGAACAGGATGGACACCTGTGCTGATCATTACAACTACTGCCGAGCAAAAGCTACTAAATGCTGCCAAATGAATCTGACAGCTGTCATCATCATTTTCACACTAAGAGAGACTATCCCTATCGACTGATCGTTCAGTTGTTGCTCACATTGACTGATCACGCTAATAGAATACATTCACCTCAGAACTAAGGATCGCCCGATTCTTACCAAACACTGCCAGCAATAGTATCTCAACTCATCTCAGAATCTCATCTCAACCCCGTACACTGCTCATAGTTTATACCGACTCTCGTACTGTCCACACCAAGGGGGGGGAATGAAAGAGGCATGGAAATAAACGGCCGACAATCGCGATCGCGTGTTATAGGCTTGTCGGCACTCTAGGAATAGTTTTCAGTCATAGCAGGTACTCCTTGTCTTAAGCGTACGTACGTACCTACTACTGGTTGTCTTCTAAATCTTCCTGTAAATATGAGACATTTGAAAAAGG] consensusID : consensus_2387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [GATCGCACGAGGTNTGGTTTCACTTCTTTTAACTAACTATTCTAGATTATTATTAATATTATTATGAGTATTTAGTAATCCGTTTTGGGGACGAACGGGGCTCATAGGGTGAACGGTACGGTCGGGTGCACAACACCACCTTCCCAACCCTTCCCGCATGTCTCGCTACGGTGTCTAGCAATTAGGCAAATTTGTACATAATGCATCGCGTAACCTCTTCCCCGATTTGATTGAACCTCCTCTCCAGCCCAGCGCAGAGCGAACGCTACGAAAGCAATACTGATGGAATATGCGAAATCTGCACTGGGGAAGTGATGTTGTACCGAGATTCACTTCTACTGCTGCTCCACAAACCACAAACCGACGGGAATAAGCTCTGTTTCGATGCTCTTTCTTAATTCCCAACCCACTATAATCTGAAATCCTGTGTGAATCGGTGGAAAATTAACGTAAATGTTATGAAAGAGGAGAACTGAATGCGATCGAACAGGATGGACACCTGTGCTGATCATTACAA] [+] EMBL AL929757 [GATCGCACGAGGTNTGGTTTCACTTCTTTTAACTAACTATTCTAGATTATTATTAATATTATTATGAGTATTTAGTAATCCGTTTTGGGGACGAACGGGGCTCATAGGGTGAACGGTACGGTCGGGTGCACAACACCACCTTCCCAACCCTTCCCGCATGTCTCGCTACGGTGTCTAGCAATTAGGCAAATTTGTACATAATGCATCGCGTAACCTCTTCCCCGATTTGATTGAACCTCCTCTCCAGCCCAGCGCAGAGCGAACGCTACGAAAGCAATACTGATGGAATATGCGAAATCTGCACTGGGGAAGTGATGTTGTACCGAGATTCACTTCTACTGCTGCTCCACAAACCACAAACCGACGGGAATAAGCTCTGTTTCGATGCTCTTTCTTAATTCCCAACCCACTATAATCTGAAATCCTGTGTGAATCGGTGGAAAATTAACGTAAATGTTATGAAAGAGGAGAACTGAATGCGATCGAACAGGATGGACACCTGTGCTGATCATTACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2387#0 CCGCGGACGCGTGGGTTCTACTGCTGCTCCACAAACCACAAACCGACGGGAATAAGCTCT 60 consensus_2387#1 --------------------------------------------GATCGCACGAGGTNTG 16 ** * * * * consensus_2387#0 GTTTCGATGCTCTTTCTTAATTCCCACCCCACTATAATCTGAAATCCTGTGTGAATC-GG 119 consensus_2387#1 GTTTCACTTCTTTTAACTAACTATT-CTAGATTATTATTAATATTATTATGAGTATTTAG 75 ***** * ** ** *** * * * *** ** * * * ** * ** * consensus_2387#0 TGGAAAATT---AACGTAAATGTTATGAAAGAGGAGAACTGAATGCGATCGAACAGGATG 176 consensus_2387#1 TAATCCGTTTTGGGGACGAACGGGGCTCATAGGGTGAAC--GGTACGGTCGGGTGCACAA 133 * ** ** * * ** **** * ** *** consensus_2387#0 GACACCTGTGCTGATCATTACAACTACTGCCGA-GCAAAAGCTACTAAATGCTGCCAAAT 235 consensus_2387#1 CACCACCTTCCCAACCCTTCCCGCATGTCTCGCTACGGTGTCTAGCAATTAGGCAAATTT 193 ** * * * * * ** * * * ** * *** ** * * * consensus_2387#0 GAATCTGACAGCTGTCATCATCATTTTCACACTAAGAGAGACTATCCCTATCGACTGATC 295 consensus_2387#1 GTACATAATGCATCGCGTAACCTCTTCCCCGATTTGATTGAACCTCCTCTCCAGCCCAGC 253 * * * * * * * * * ** * * * ** ** *** * * * * consensus_2387#0 GTTCAGTTGTTGCT-CACATTGACTGATCACGCTA-ATAGAATACATTCACCTCAGAACT 353 consensus_2387#1 GCAGAGCGAACGCTACGAAAGCAATACTGATGGAATATGCGAAATCTGCACTGGGGAAGT 313 * ** *** * * * * * * * * ** * * * *** *** * consensus_2387#0 AAGGATCGCCCGATTCTTAC--CAAACACTGC--CAGCAATAGTATCTCAACTCATCTCA 409 consensus_2387#1 GATGTTGTACCGAGATTCACTTCTACTGCTGCTCCACAAACCACAAACCGACGGGAATAA 373 * * * **** * ** * * **** ** ** * * ** * * consensus_2387#0 GAATCTCATCTCAACCCCGTACACTGCTCATAGTTTA-TACCGACTCTCGTACTGTCCAC 468 consensus_2387#1 GC-TCTGTTTCGATGCTCTTTCTTAATTCCCAACCCACTATAATCTGAAATCCTGTGTGA 432 * *** * * * * * * ** * * ** ** * **** consensus_2387#0 ACCAAGGGGGGGG-AATGAAAGAGGCATGGAAATAAACGGCCGACAATCGCGATCGCGTG 527 consensus_2387#1 ATCGGTGGAAAATTAACGTAAATGTTATGAAAGAGGAGAACTGAA---TGCGATCGAACA 489 * * ** ** * ** * *** ** * * ** ******* consensus_2387#0 TTATAGGCTTGTCGGCACTCTAGGAATAGTTTTCAGTCATAGCAGGTACTCCTTGTCTTA 587 consensus_2387#1 GGATGGACACCTGTGCTGATCATTACAA-------------------------------- 517 ** * * * ** * * * consensus_2387#0 AGCGTACGTACGTACCTACTACTGGTTGTCTTCTAAATCTTCCTGTAAATATGAGACATT 647 consensus_2387#1 ------------------------------------------------------------ consensus_2387#0 TGAAAAAGG 656 consensus_2387#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||