cluster # 2389

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Anopheles gambiae
cluster # 2389 cluster # 2389 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2389#0 length = 443 sequences # 1

consensus_2389#1 length = 224 sequences # 1

consensusID : consensus_2389#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [AAGAATCGCCACGAGGTCATCACCAAGCGACCGGTACTGGCTCCAGGATATGGGGCCCGTACAAGCATGCAATCATCCCGGACCTGTACCTGAACGAGGCAGGCCAAAGTGCGACGGGCGTACTGATCGATTACATGCTTCAAACGCACCCATGCTACGACCAGCTGCTTAAAGAGCACGGCGGTTCCAATGGGAAGATTTATGCCTTTCTCAACACATTCCTAGATGAGTTGGCAAAAAAGCAGGGTGAAAGTTCCGTTCACCGACTAACGATCGATCTGCACGTTTGGCCCGACTTTCACGGCAATCGGTCGCCTCTGGCCGACCCTAATCTGAAGGGTATGATATCGGGTCTAACGATGACGAAGGATGTGCAAAACTTGGCGCTTATTTATCTTGCTCTCATGCAAGCACTAGCGTACGGAACACGACACATACTGCAG]

[+] EMBL AL929761             [AAGAATCGCCACGAGGTCATCACCAAGCGACCGGTACTGGCTCCAGGATATGGGGCCCGTACAAGCATGCAATCATCCCGGACCTGTACCTGAACGAGGCAGGCCAAAGTGCGACGGGCGTACTGATCGATTACATGCTTCAAACGCACCCATGCTACGACCAGCTGCTTAAAGAGCACGGCGGTTCCAATGGGAAGATTTATGCCTTTCTCAACACATTCCTAGATGAGTTGGCAAAAAAGCAGGGTGAAAGTTCCGTTCACCGACTAACGATCGATCTGCACGTTTGGCCCGACTTTCACGGCAATCGGTCGCCTCTGGCCGACCCTAATCTGAAGGGTATGATATCGGGTCTAACGATGACGAAGGATGTGCAAAACTTGGCGCTTATTTATCTTGCTCTCATGCAAGCACTAGCGTACGGAACACGACACATACTGCAG]




>consensus_2389#0
AAGAATCGCCACGAGGTCATCACCAAGCGACCGGTACTGGCTCCAGGATATGGGGCCCGT
ACAAGCATGCAATCATCCCGGACCTGTACCTGAACGAGGCAGGCCAAAGTGCGACGGGCG
TACTGATCGATTACATGCTTCAAACGCACCCATGCTACGACCAGCTGCTTAAAGAGCACG
GCGGTTCCAATGGGAAGATTTATGCCTTTCTCAACACATTCCTAGATGAGTTGGCAAAAA
AGCAGGGTGAAAGTTCCGTTCACCGACTAACGATCGATCTGCACGTTTGGCCCGACTTTC
ACGGCAATCGGTCGCCTCTGGCCGACCCTAATCTGAAGGGTATGATATCGGGTCTAACGA
TGACGAAGGATGTGCAAAACTTGGCGCTTATTTATCTTGCTCTCATGCAAGCACTAGCGT
ACGGAACACGACACATACTGCAG

consensusID : consensus_2389#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [ATCCTCGTGCCATATGAGTCTTACCAAGCGACCGGTACTGGCTCCAGGGATATGGGGCCCGTACAAGCATGCAATCATCCCGGACCTGTACCTGAACGAGGCAGGCCAAAGTGCGACGGGCGTACTGATCGATTACATGCTTCAAACGCACCCATACTACGACCAGCTGCTTAAAGAGCACGGCGGTTCCAATGGGAAGATTTATGCCTTTCTCAACACATTCC]

[+] EMBL BX606891             [ATCCTCGTGCCATATGAGTCTTACCAAGCGACCGGTACTGGCTCCAGGGATATGGGGCCCGTACAAGCATGCAATCATCCCGGACCTGTACCTGAACGAGGCAGGCCAAAGTGCGACGGGCGTACTGATCGATTACATGCTTCAAACGCACCCATACTACGACCAGCTGCTTAAAGAGCACGGCGGTTCCAATGGGAAGATTTATGCCTTTCTCAACACATTCC]




>consensus_2389#1
ATCCTCGTGCCATATGAGTCTTACCAAGCGACCGGTACTGGCTCCAGGGATATGGGGCCC
GTACAAGCATGCAATCATCCCGGACCTGTACCTGAACGAGGCAGGCCAAAGTGCGACGGG
CGTACTGATCGATTACATGCTTCAAACGCACCCATACTACGACCAGCTGCTTAAAGAGCA
CGGCGGTTCCAATGGGAAGATTTATGCCTTTCTCAACACATTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2389#0      AAGAATCG--CCACGAGGTCATCACCAAGCGACCGGTACTGGCTCCAGG-ATATGGGGCC 57
consensus_2389#1      -ATCCTCGTGCCATATGAGTCTTACCAAGCGACCGGTACTGGCTCCAGGGATATGGGGCC 59
                       *   ***  ***   *    * ************************** **********

consensus_2389#0      CGTACAAGCATGCAATCATCCCGGACCTGTACCTGAACGAGGCAGGCCAAAGTGCGACGG 117
consensus_2389#1      CGTACAAGCATGCAATCATCCCGGACCTGTACCTGAACGAGGCAGGCCAAAGTGCGACGG 119
                      ************************************************************

consensus_2389#0      GCGTACTGATCGATTACATGCTTCAAACGCACCCATGCTACGACCAGCTGCTTAAAGAGC 177
consensus_2389#1      GCGTACTGATCGATTACATGCTTCAAACGCACCCATACTACGACCAGCTGCTTAAAGAGC 179
                      ************************************ ***********************

consensus_2389#0      ACGGCGGTTCCAATGGGAAGATTTATGCCTTTCTCAACACATTCCTAGATGAGTTGGCAA 237
consensus_2389#1      ACGGCGGTTCCAATGGGAAGATTTATGCCTTTCTCAACACATTCC--------------- 224
                      *********************************************               

consensus_2389#0      AAAAGCAGGGTGAAAGTTCCGTTCACCGACTAACGATCGATCTGCACGTTTGGCCCGACT 297
consensus_2389#1      ------------------------------------------------------------
                                                                                  

consensus_2389#0      TTCACGGCAATCGGTCGCCTCTGGCCGACCCTAATCTGAAGGGTATGATATCGGGTCTAA 357
consensus_2389#1      ------------------------------------------------------------
                                                                                  

consensus_2389#0      CGATGACGAAGGATGTGCAAAACTTGGCGCTTATTTATCTTGCTCTCATGCAAGCACTAG 417
consensus_2389#1      ------------------------------------------------------------
                                                                                  

consensus_2389#0      CGTACGGAACACGACACATACTGCAG 443
consensus_2389#1      --------------------------