cluster # 239

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Anopheles gambiae
cluster # 239 cluster # 239 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_239#0 length = 547 sequences # 1

consensus_239#1 length = 522 sequences # 1

consensusID : consensus_239#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCCGCGAACAGTCCAGGCCGCTGGTAATTGTTTCTCGAGGTCATCATTGTGGTCCGGTTTAGTTTACTGTTCGGACATTTCTTTCTTTTTGCAACATGTTTTCAGTGATAACTGTGAGTGATTCCTGTGCCGCTGGTAAAGCAACCGACACGAGCGGACCCCATTTGGTGGAATTGATCAAACAGTCGCTGAAGACGGACACCGTAAACTACCTGTTGATTCCGGACGAGGAGGATTTGATAAAACAATCCCTCATTTACGCTTGCGATGTGCTCAAAGTGCGAGCGGTCTTCACGACGGGCGGCACCGGCTTTGCTCCACGCGATGTCACGCCGGAAGCGACACGAGCGATTATTACGAAGGAAGCACCCCAGTTAACGTTGGCCATGACACTGTGCAGCTTGGAGAAGACGAAGTTTGCGGTACTGTCGAGAGCGGTCTGTGGTGTGCGAAACAAAACGCTGGTCGTTAACTTCCCGGGCAGTAAAAAGGCGGTCGGCGAATGCTTCCAGTCGAATCGT]

[+] EMBL BM579312             [CCGCGGACGCGTGGGCGGACGCGTGGGCCGCGAACAGTCCAGGCCGCTGGTAATTGTTTCTCGAGGTCATCATTGTGGTCCGGTTTAGTTTACTGTTCGGACATTTCTTTCTTTTTGCAACATGTTTTCAGTGATAACTGTGAGTGATTCCTGTGCCGCTGGTAAAGCAACCGACACGAGCGGACCCCATTTGGTGGAATTGATCAAACAGTCGCTGAAGACGGACACCGTAAACTACCTGTTGATTCCGGACGAGGAGGATTTGATAAAACAATCCCTCATTTACGCTTGCGATGTGCTCAAAGTGCGAGCGGTCTTCACGACGGGCGGCACCGGCTTTGCTCCACGCGATGTCACGCCGGAAGCGACACGAGCGATTATTACGAAGGAAGCACCCCAGTTAACGTTGGCCATGACACTGTGCAGCTTGGAGAAGACGAAGTTTGCGGTACTGTCGAGAGCGGTCTGTGGTGTGCGAAACAAAACGCTGGTCGTTAACTTCCCGGGCAGTAAAAAGGCGGTCGGCGAATGCTTCCAGTCGAATCGT]




>consensus_239#0
CCGCGGACGCGTGGGCGGACGCGTGGGCCGCGAACAGTCCAGGCCGCTGGTAATTGTTTC
TCGAGGTCATCATTGTGGTCCGGTTTAGTTTACTGTTCGGACATTTCTTTCTTTTTGCAA
CATGTTTTCAGTGATAACTGTGAGTGATTCCTGTGCCGCTGGTAAAGCAACCGACACGAG
CGGACCCCATTTGGTGGAATTGATCAAACAGTCGCTGAAGACGGACACCGTAAACTACCT
GTTGATTCCGGACGAGGAGGATTTGATAAAACAATCCCTCATTTACGCTTGCGATGTGCT
CAAAGTGCGAGCGGTCTTCACGACGGGCGGCACCGGCTTTGCTCCACGCGATGTCACGCC
GGAAGCGACACGAGCGATTATTACGAAGGAAGCACCCCAGTTAACGTTGGCCATGACACT
GTGCAGCTTGGAGAAGACGAAGTTTGCGGTACTGTCGAGAGCGGTCTGTGGTGTGCGAAA
CAAAACGCTGGTCGTTAACTTCCCGGGCAGTAAAAAGGCGGTCGGCGAATGCTTCCAGTC
GAATCGT

consensusID : consensus_239#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [ACAACCGGTAGCGGCATTAAAAGGCAGCACCGCGATACAGTCCAGGCCGCTGGTAATTGTTTCTCGAGGTCATCATTCTGGTCCGGTTTAGTTTACTGTTCGGACATTTCTTTCTTTTTGCAACATGTTTTCAGTGATAACTGTGAGTGATTCCTGTGCCGCTGGTAAAGCAACCGACACGAGCGGTCCCCATTTGGTGGAATTGATCAAACAGTCGCTGAAGACGGACACCGTGAACTACCTGTTGATTCCGGACGAGGAGGATTTGATAAAACAATCCCTCATCTACGCTTGCGATGTGCTCAAAGTGCGAGCGGTCTTCACGACGGGCGGCACCGGCTTTGCTCCACGCGATGTCACGCCGGAAGCGACACGAGCCATTATTACGAAGGAAGCACCCCAGCTAACGCTGGCCATGACACTGTGCAGCTTGGAGAAGACGAAGTTTGCGGTACTGTCGAGAGCGGTCTGTGGTGTGCGAAACAAAACGCTGGTCGTTACTTCCCGGGCAGTAAAAAGGCG]

[+] EMBL CNS09LZV             [ACAACCGGTAGCGGCATTAAAAGGCAGCACCGCGATACAGTCCAGGCCGCTGGTAATTGTTTCTCGAGGTCATCATTCTGGTCCGGTTTAGTTTACTGTTCGGACATTTCTTTCTTTTTGCAACATGTTTTCAGTGATAACTGTGAGTGATTCCTGTGCCGCTGGTAAAGCAACCGACACGAGCGGTCCCCATTTGGTGGAATTGATCAAACAGTCGCTGAAGACGGACACCGTGAACTACCTGTTGATTCCGGACGAGGAGGATTTGATAAAACAATCCCTCATCTACGCTTGCGATGTGCTCAAAGTGCGAGCGGTCTTCACGACGGGCGGCACCGGCTTTGCTCCACGCGATGTCACGCCGGAAGCGACACGAGCCATTATTACGAAGGAAGCACCCCAGCTAACGCTGGCCATGACACTGTGCAGCTTGGAGAAGACGAAGTTTGCGGTACTGTCGAGAGCGGTCTGTGGTGTGCGAAACAAAACGCTGGTCGTTACTTCCCGGGCAGTAAAAAGGCG]




>consensus_239#1
ACAACCGGTAGCGGCATTAAAAGGCAGCACCGCGATACAGTCCAGGCCGCTGGTAATTGT
TTCTCGAGGTCATCATTCTGGTCCGGTTTAGTTTACTGTTCGGACATTTCTTTCTTTTTG
CAACATGTTTTCAGTGATAACTGTGAGTGATTCCTGTGCCGCTGGTAAAGCAACCGACAC
GAGCGGTCCCCATTTGGTGGAATTGATCAAACAGTCGCTGAAGACGGACACCGTGAACTA
CCTGTTGATTCCGGACGAGGAGGATTTGATAAAACAATCCCTCATCTACGCTTGCGATGT
GCTCAAAGTGCGAGCGGTCTTCACGACGGGCGGCACCGGCTTTGCTCCACGCGATGTCAC
GCCGGAAGCGACACGAGCCATTATTACGAAGGAAGCACCCCAGCTAACGCTGGCCATGAC
ACTGTGCAGCTTGGAGAAGACGAAGTTTGCGGTACTGTCGAGAGCGGTCTGTGGTGTGCG
AAACAAAACGCTGGTCGTTACTTCCCGGGCAGTAAAAAGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_239#0      --CCGCGGACGCGTGGGCGGACGCGTGGGCCGCGA-ACAGTCCAGGCCGCTGGTAATTGT 57
consensus_239#1      ACAACCGGTAGCGGCATTAAAAGGCAGCACCGCGATACAGTCCAGGCCGCTGGTAATTGT 60
                          ***  ***       * *   *  ****** ************************

consensus_239#0      TTCTCGAGGTCATCATTGTGGTCCGGTTTAGTTTACTGTTCGGACATTTCTTTCTTTTTG 117
consensus_239#1      TTCTCGAGGTCATCATTCTGGTCCGGTTTAGTTTACTGTTCGGACATTTCTTTCTTTTTG 120
                     ***************** ******************************************

consensus_239#0      CAACATGTTTTCAGTGATAACTGTGAGTGATTCCTGTGCCGCTGGTAAAGCAACCGACAC 177
consensus_239#1      CAACATGTTTTCAGTGATAACTGTGAGTGATTCCTGTGCCGCTGGTAAAGCAACCGACAC 180
                     ************************************************************

consensus_239#0      GAGCGGACCCCATTTGGTGGAATTGATCAAACAGTCGCTGAAGACGGACACCGTAAACTA 237
consensus_239#1      GAGCGGTCCCCATTTGGTGGAATTGATCAAACAGTCGCTGAAGACGGACACCGTGAACTA 240
                     ****** *********************************************** *****

consensus_239#0      CCTGTTGATTCCGGACGAGGAGGATTTGATAAAACAATCCCTCATTTACGCTTGCGATGT 297
consensus_239#1      CCTGTTGATTCCGGACGAGGAGGATTTGATAAAACAATCCCTCATCTACGCTTGCGATGT 300
                     ********************************************* **************

consensus_239#0      GCTCAAAGTGCGAGCGGTCTTCACGACGGGCGGCACCGGCTTTGCTCCACGCGATGTCAC 357
consensus_239#1      GCTCAAAGTGCGAGCGGTCTTCACGACGGGCGGCACCGGCTTTGCTCCACGCGATGTCAC 360
                     ************************************************************

consensus_239#0      GCCGGAAGCGACACGAGCGATTATTACGAAGGAAGCACCCCAGTTAACGTTGGCCATGAC 417
consensus_239#1      GCCGGAAGCGACACGAGCCATTATTACGAAGGAAGCACCCCAGCTAACGCTGGCCATGAC 420
                     ****************** ************************ ***** **********

consensus_239#0      ACTGTGCAGCTTGGAGAAGACGAAGTTTGCGGTACTGTCGAGAGCGGTCTGTGGTGTGCG 477
consensus_239#1      ACTGTGCAGCTTGGAGAAGACGAAGTTTGCGGTACTGTCGAGAGCGGTCTGTGGTGTGCG 480
                     ************************************************************

consensus_239#0      AAACAAAACGCTGGTCGTTAACTTCCCGGGCAGTAAAAAGGCGGTCGGCGAATGCTTCCA 537
consensus_239#1      AAACAAAACGCTGGTCGTTA-CTTCCCGGGCAGTAAAAAGGCG----------------- 522
                     ******************** **********************                 

consensus_239#0      GTCGAATCGT 547
consensus_239#1      ----------