These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCCGCGAACAGTCCAGGCCGCTGGTAATTGTTTCTCGAGGTCATCATTGTGGTCCGGTTTAGTTTACTGTTCGGACATTTCTTTCTTTTTGCAACATGTTTTCAGTGATAACTGTGAGTGATTCCTGTGCCGCTGGTAAAGCAACCGACACGAGCGGACCCCATTTGGTGGAATTGATCAAACAGTCGCTGAAGACGGACACCGTAAACTACCTGTTGATTCCGGACGAGGAGGATTTGATAAAACAATCCCTCATTTACGCTTGCGATGTGCTCAAAGTGCGAGCGGTCTTCACGACGGGCGGCACCGGCTTTGCTCCACGCGATGTCACGCCGGAAGCGACACGAGCGATTATTACGAAGGAAGCACCCCAGTTAACGTTGGCCATGACACTGTGCAGCTTGGAGAAGACGAAGTTTGCGGTACTGTCGAGAGCGGTCTGTGGTGTGCGAAACAAAACGCTGGTCGTTAACTTCCCGGGCAGTAAAAAGGCGGTCGGCGAATGCTTCCAGTCGAATCGT] [+] EMBL BM579312 [CCGCGGACGCGTGGGCGGACGCGTGGGCCGCGAACAGTCCAGGCCGCTGGTAATTGTTTCTCGAGGTCATCATTGTGGTCCGGTTTAGTTTACTGTTCGGACATTTCTTTCTTTTTGCAACATGTTTTCAGTGATAACTGTGAGTGATTCCTGTGCCGCTGGTAAAGCAACCGACACGAGCGGACCCCATTTGGTGGAATTGATCAAACAGTCGCTGAAGACGGACACCGTAAACTACCTGTTGATTCCGGACGAGGAGGATTTGATAAAACAATCCCTCATTTACGCTTGCGATGTGCTCAAAGTGCGAGCGGTCTTCACGACGGGCGGCACCGGCTTTGCTCCACGCGATGTCACGCCGGAAGCGACACGAGCGATTATTACGAAGGAAGCACCCCAGTTAACGTTGGCCATGACACTGTGCAGCTTGGAGAAGACGAAGTTTGCGGTACTGTCGAGAGCGGTCTGTGGTGTGCGAAACAAAACGCTGGTCGTTAACTTCCCGGGCAGTAAAAAGGCGGTCGGCGAATGCTTCCAGTCGAATCGT] consensusID : consensus_239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [ACAACCGGTAGCGGCATTAAAAGGCAGCACCGCGATACAGTCCAGGCCGCTGGTAATTGTTTCTCGAGGTCATCATTCTGGTCCGGTTTAGTTTACTGTTCGGACATTTCTTTCTTTTTGCAACATGTTTTCAGTGATAACTGTGAGTGATTCCTGTGCCGCTGGTAAAGCAACCGACACGAGCGGTCCCCATTTGGTGGAATTGATCAAACAGTCGCTGAAGACGGACACCGTGAACTACCTGTTGATTCCGGACGAGGAGGATTTGATAAAACAATCCCTCATCTACGCTTGCGATGTGCTCAAAGTGCGAGCGGTCTTCACGACGGGCGGCACCGGCTTTGCTCCACGCGATGTCACGCCGGAAGCGACACGAGCCATTATTACGAAGGAAGCACCCCAGCTAACGCTGGCCATGACACTGTGCAGCTTGGAGAAGACGAAGTTTGCGGTACTGTCGAGAGCGGTCTGTGGTGTGCGAAACAAAACGCTGGTCGTTACTTCCCGGGCAGTAAAAAGGCG] [+] EMBL CNS09LZV [ACAACCGGTAGCGGCATTAAAAGGCAGCACCGCGATACAGTCCAGGCCGCTGGTAATTGTTTCTCGAGGTCATCATTCTGGTCCGGTTTAGTTTACTGTTCGGACATTTCTTTCTTTTTGCAACATGTTTTCAGTGATAACTGTGAGTGATTCCTGTGCCGCTGGTAAAGCAACCGACACGAGCGGTCCCCATTTGGTGGAATTGATCAAACAGTCGCTGAAGACGGACACCGTGAACTACCTGTTGATTCCGGACGAGGAGGATTTGATAAAACAATCCCTCATCTACGCTTGCGATGTGCTCAAAGTGCGAGCGGTCTTCACGACGGGCGGCACCGGCTTTGCTCCACGCGATGTCACGCCGGAAGCGACACGAGCCATTATTACGAAGGAAGCACCCCAGCTAACGCTGGCCATGACACTGTGCAGCTTGGAGAAGACGAAGTTTGCGGTACTGTCGAGAGCGGTCTGTGGTGTGCGAAACAAAACGCTGGTCGTTACTTCCCGGGCAGTAAAAAGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_239#0 --CCGCGGACGCGTGGGCGGACGCGTGGGCCGCGA-ACAGTCCAGGCCGCTGGTAATTGT 57 consensus_239#1 ACAACCGGTAGCGGCATTAAAAGGCAGCACCGCGATACAGTCCAGGCCGCTGGTAATTGT 60 *** *** * * * ****** ************************ consensus_239#0 TTCTCGAGGTCATCATTGTGGTCCGGTTTAGTTTACTGTTCGGACATTTCTTTCTTTTTG 117 consensus_239#1 TTCTCGAGGTCATCATTCTGGTCCGGTTTAGTTTACTGTTCGGACATTTCTTTCTTTTTG 120 ***************** ****************************************** consensus_239#0 CAACATGTTTTCAGTGATAACTGTGAGTGATTCCTGTGCCGCTGGTAAAGCAACCGACAC 177 consensus_239#1 CAACATGTTTTCAGTGATAACTGTGAGTGATTCCTGTGCCGCTGGTAAAGCAACCGACAC 180 ************************************************************ consensus_239#0 GAGCGGACCCCATTTGGTGGAATTGATCAAACAGTCGCTGAAGACGGACACCGTAAACTA 237 consensus_239#1 GAGCGGTCCCCATTTGGTGGAATTGATCAAACAGTCGCTGAAGACGGACACCGTGAACTA 240 ****** *********************************************** ***** consensus_239#0 CCTGTTGATTCCGGACGAGGAGGATTTGATAAAACAATCCCTCATTTACGCTTGCGATGT 297 consensus_239#1 CCTGTTGATTCCGGACGAGGAGGATTTGATAAAACAATCCCTCATCTACGCTTGCGATGT 300 ********************************************* ************** consensus_239#0 GCTCAAAGTGCGAGCGGTCTTCACGACGGGCGGCACCGGCTTTGCTCCACGCGATGTCAC 357 consensus_239#1 GCTCAAAGTGCGAGCGGTCTTCACGACGGGCGGCACCGGCTTTGCTCCACGCGATGTCAC 360 ************************************************************ consensus_239#0 GCCGGAAGCGACACGAGCGATTATTACGAAGGAAGCACCCCAGTTAACGTTGGCCATGAC 417 consensus_239#1 GCCGGAAGCGACACGAGCCATTATTACGAAGGAAGCACCCCAGCTAACGCTGGCCATGAC 420 ****************** ************************ ***** ********** consensus_239#0 ACTGTGCAGCTTGGAGAAGACGAAGTTTGCGGTACTGTCGAGAGCGGTCTGTGGTGTGCG 477 consensus_239#1 ACTGTGCAGCTTGGAGAAGACGAAGTTTGCGGTACTGTCGAGAGCGGTCTGTGGTGTGCG 480 ************************************************************ consensus_239#0 AAACAAAACGCTGGTCGTTAACTTCCCGGGCAGTAAAAAGGCGGTCGGCGAATGCTTCCA 537 consensus_239#1 AAACAAAACGCTGGTCGTTA-CTTCCCGGGCAGTAAAAAGGCG----------------- 522 ******************** ********************** consensus_239#0 GTCGAATCGT 547 consensus_239#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||